Basic Information

Insect: Lucilia sericata
Gene Symbol: pita
Assembly: GCA_015586225.1
Location: NW:67030-72891[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.7 2.2e+02 2.3 2.1 1 17 67 83 67 84 0.92

2 11 1.1 51 4.3 0.7 1 23 316 338 316 338 0.96

3 11 0.00021 0.0099 16.0 6.8 1 23 344 366 344 366 0.95

4 11 2.7e-06 0.00013 22.0 1.6 1 23 372 394 372 394 0.99

5 11 0.00018 0.0085 16.2 0.8 1 23 400 422 400 422 0.96

6 11 0.00024 0.011 15.8 0.2 1 23 428 450 428 450 0.94

7 11 9.3e-06 0.00043 20.3 1.2 1 23 456 478 456 478 0.96

8 11 0.00048 0.023 14.9 5.7 1 23 484 506 484 506 0.98

9 11 0.00016 0.0073 16.4 0.3 1 23 518 540 518 540 0.97

10 11 0.038 1.8 8.9 0.1 3 23 548 568 546 568 0.95

11 11 0.013 0.61 10.4 0.3 1 23 574 597 574 597 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.7	2.2e+02	2.3	2.1	1	17	67	83	67	84	0.92
2	11	1.1	51	4.3	0.7	1	23	316	338	316	338	0.96
3	11	0.00021	0.0099	16.0	6.8	1	23	344	366	344	366	0.95
4	11	2.7e-06	0.00013	22.0	1.6	1	23	372	394	372	394	0.99
5	11	0.00018	0.0085	16.2	0.8	1	23	400	422	400	422	0.96
6	11	0.00024	0.011	15.8	0.2	1	23	428	450	428	450	0.94
7	11	9.3e-06	0.00043	20.3	1.2	1	23	456	478	456	478	0.96
8	11	0.00048	0.023	14.9	5.7	1	23	484	506	484	506	0.98
9	11	0.00016	0.0073	16.4	0.3	1	23	518	540	518	540	0.97
10	11	0.038	1.8	8.9	0.1	3	23	548	568	546	568	0.95
11	11	0.013	0.61	10.4	0.3	1	23	574	597	574	597	0.92

Sequence Information

Coding Sequence: ATGGCTACTTTGGATTATGATGCTTTGCAAGCTGAGCTGAAAAGGAAGCGAATATGTCGCTTTTGTCTGTGTCAGGATCTggcaaaattaacaaatattttttgtcgTGATACACGCATCAAATCATCTGCTCCCTTGCCTATACAAATAATGGCTATAGCTTCTATCGAGTGTTTTAGTAACGACGGCATGCCTCCTTATGTTTGCTGCGATTGTACAGCCATATTTGAGTACAGTTATCAATTTAAACAAATGTGCAAAAAAGCCGACAATCTCTTGCGCCAATTTCCCTTAACTGGCAAATGTCCTGAGAGTTTGGATAAACCCATTTTACAGGAAGCTCTAGCGCATCAAACAATCCCAGTAACACCTGGCAAGCAGTATAACAAAACAACTCAAGTACGTGTACAACACAATAAATCGACTGCAGTAGCACAAGAATCTCTACTATTgcccaaaaaaatattaaactcaTCGGTAGCCAAAGCTAAGGTAACAGCTACTGTAAGCAAACCGCCGCAAAACTCGGCAAAATGTGAGAGCGCTCAAAAAGCTCAAGTTACAAAAGTGGAGCAGTTAGATGAGGATTGCAGCATTACATTTTtggataaaattgaaaataacgATGAGTTATCCTTAGATGATATACATCAATTGGTGGCGGCTGAAGGTATACAAGAAACGGAATTTGTCAATATGGATACTTTACCCGTAGTGGTGGTAGACTCCGGTAATAAAACTACTAAACccaaattattaaacaaatccTCCGTAAGGATTTTAAATAAGGAGGCAGATCGTGAAACTGAACCACGTTTAAGTATGCCAATGATAAAGCAAGACGTAGATGGTAAAATGGAAATTGTggctgaaattttaaatattgatgaTAACTATGAAGATGAACCGGATCCGAAAAATGCTGCTCCCGTTGAGACTAATGTATTTCCTTGTCCCTGTTGTGAGCGCACATTTCCCTTGTTACAGTTGCGTGAGatacatttaaaaatgcattcacGTGACCGTAAATTCCAATGTGATCATTGTGATAAATCATTCTTCTCTAAATATGACTTGCATCGTCACTCTTTCATACATAATGGCGAAAAGCCCTTCAAATGTTCAGCCTGCGATAAGGCTTTTTCGCGTACCAGCCTGTTGACGCGACACGAAAAGACCCATACCGACATACCCAAATTCATATGCGTGCACTGTGAACGTTCCTTTATATCGAAAGACGATATGGAGAGACATGCTGAGCGTCACAATATACATCGACCATTCGCTTGTAAAGTTTGCAATAAGGCATTTGCCTTTAAACAAGGTCTTGAACGTCATGAGGTCGTACATTCACGTCAGCAGCCCTACCCTTGTCAGTACTGCGATCAGAGTTTCTCAACCACTTCTAAACTGTCTCGTCATTTGACTGCCCATGCTGGTCTTAGGCCATATCCttgtaaaatttgcaaaaaatcatatttactATCCCACCATCTTACGCGGCACATGCGCTCTCATAAAAATGTCGTGGATCCCATCCATTCCATTCTATTTACGTGCAATTCTTGTAGCACCAGTTTCGTAACGCGCGATGAACTTATAGCGCATTCTGCTACCCATGCAAATGAGAGCAATCTAGCCTGTCCTCTGTGCAAAGACGTTTTTGAGGATATGAACAGTTTAACTACTCACATACAAGATCACTCTGAAGGCGAAGCTTATGCCTGTGAATTTTGCGATTTTATCTTTATGACAGCagataaattacaattacatacgGATCAAGATCATGCTCAAGAAATGGAAGCCTATCATGCCGACGATCGTGCTCAGGCCGATAAGCAAATGGAAGAGTCTCAAAAGCAAACAGCCTTAAGTGACGAAAAGTTGCAGAATGCTGTTAATGAATTTCTTGTTGATGATATGTCCGACGAGGCAAACGAATCGCTTGAATCGGTGAAGAATAAGATTAAAAGTGAAAAAGATAAACAATCACCCAAGATCATAAACCAAATTATAATACGAAGTGCAACAAATGATCAGAATGATGAAAATAAGGTGGAAGATAACAACAGTCTATTGATACCGTTAAAACAACGTAAACTTGATGAAGCTGGAAAAAAAGCTGTAACACAAACAAAACCACAACCACAAATAAAACAATCACCACAATTAAGACGAAAAACACCAAATGCGAATGCAACACCAACAAGGGAAGCAAATCAACCAACCATTCAATCTCTATTAAAAACGCCTAAAACGGCGACTATTAACAAAAGGTCTCCAACAAAGACAGTGACACCAACCAACGTATTGCCCAAACCAAAAGCaattaaagttgaaaaaaatactTCTGCTGAAACGCCAACTTCATCTACGTCCACAAGTACAGTTGAAGAATCTAGTATCGATGATCTTGTAAAAAAGAAACTTGGCGGTAAAAAGGTTAAAGTGCAGAAAATTACCGTAACAAAAGCTCAAGCAGCTGCTATGGCTAAAGAAGGTCGTATTAAAATCAAAGATGGTAAAATTatcttaaacaaataa
Protein Sequence: MATLDYDALQAELKRKRICRFCLCQDLAKLTNIFCRDTRIKSSAPLPIQIMAIASIECFSNDGMPPYVCCDCTAIFEYSYQFKQMCKKADNLLRQFPLTGKCPESLDKPILQEALAHQTIPVTPGKQYNKTTQVRVQHNKSTAVAQESLLLPKKILNSSVAKAKVTATVSKPPQNSAKCESAQKAQVTKVEQLDEDCSITFLDKIENNDELSLDDIHQLVAAEGIQETEFVNMDTLPVVVVDSGNKTTKPKLLNKSSVRILNKEADRETEPRLSMPMIKQDVDGKMEIVAEILNIDDNYEDEPDPKNAAPVETNVFPCPCCERTFPLLQLREIHLKMHSRDRKFQCDHCDKSFFSKYDLHRHSFIHNGEKPFKCSACDKAFSRTSLLTRHEKTHTDIPKFICVHCERSFISKDDMERHAERHNIHRPFACKVCNKAFAFKQGLERHEVVHSRQQPYPCQYCDQSFSTTSKLSRHLTAHAGLRPYPCKICKKSYLLSHHLTRHMRSHKNVVDPIHSILFTCNSCSTSFVTRDELIAHSATHANESNLACPLCKDVFEDMNSLTTHIQDHSEGEAYACEFCDFIFMTADKLQLHTDQDHAQEMEAYHADDRAQADKQMEESQKQTALSDEKLQNAVNEFLVDDMSDEANESLESVKNKIKSEKDKQSPKIINQIIIRSATNDQNDENKVEDNNSLLIPLKQRKLDEAGKKAVTQTKPQPQIKQSPQLRRKTPNANATPTREANQPTIQSLLKTPKTATINKRSPTKTVTPTNVLPKPKAIKVEKNTSAETPTSSTSTSTVEESSIDDLVKKKLGGKKVKVQKITVTKAQAAAMAKEGRIKIKDGKIILNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00921589;
90% Identity: iTF_00921589;
80% Identity: -