Lser001430.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- -
- Assembly
- GCA_015586225.1
- Location
- NW:104064-105924[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0085 0.4 11.0 0.8 3 23 212 233 210 233 0.94 2 10 2 95 3.5 1.1 6 21 242 257 242 259 0.94 3 10 1.6e-05 0.00077 19.5 1.9 1 23 265 288 265 288 0.97 4 10 3.5e-05 0.0016 18.5 1.9 1 23 297 319 297 319 0.97 5 10 4e-05 0.0019 18.3 0.2 1 23 327 350 327 350 0.95 6 10 0.00013 0.006 16.7 0.8 2 23 357 378 356 378 0.97 7 10 0.056 2.6 8.4 0.2 3 23 388 409 386 409 0.93 8 10 2e-05 0.00093 19.2 0.9 1 23 417 440 417 440 0.97 9 10 4.8e-07 2.2e-05 24.3 1.0 1 23 446 469 446 469 0.96 10 10 4.3e-06 0.0002 21.3 1.0 1 23 475 498 475 498 0.97
Sequence Information
- Coding Sequence
- atggaTTCCTGTTTGTTgtgtttagaatttaataaagatttcctggATTTTATTCAGGTTAATACAATGCGATGGCAAGAGcttgaaataacaaaaatccTAGAGAAACATTTCTGGTCACTGAGGACTATACAAACGGGCACTTGGTTATGTCTAACCTGCTGGAAAGAATTGGACAGTTTTCACAAATTCTATTTGCGCATAGAAGAGGCTCATATAAATTTTGGAAAAGTAAACCTTGACAAGgaatttaaagaagaaaatgttATGGAAAATTTGGCAGCTAGTTGTCTTGAGCCGGAAATTTTAATAGAACCGAATGCTCAAGAGATTTTGGAAGATGAAGAGACAACTTGTATAAAATCTAATAATAAACTAGATAGtggaaaaaatctattaaacaaTGATCCTTTAGAGAAAGTTGTAgttattaaaaccaaaaataaaaggaatttaataaataaaactaaaaccgaAATAAAATCAGAACTACACCATTCTTCAGATAGTGCAAGTGATCGAGAGGAAGACAATAATAGCCAGGAATCAAGTAAAGAGGCTAAGCAAAAGATGGAACGTTTAAATCGTAAAGAAACAGATAAATTTATAGCTGAAAACTTTGAGCAAATGTTCTGTGATCTTTGCGGTGTTCCATTTGAAAATTTCAGCTCCATGCAAAAACATTTCTCCAGAAAACATGAACGAAAAGGTTATCTTCTTTGCTGCAACCGAAAATTCTATGAACGTAATAATTTAGTGGATCATTTGCAATGCCATCTGAATCCCGATTATTTTAAGTGTACTCAATGCGGCAAAATTCTGTCGGatcggaaaaattttaaaagtcacCAGCTGCGTGTACATCGACCAAATGATGTTGTTTTAAAGCATTCCTGTGACATCTGTGGTAAGTCTTTTACCCAAGGCTATGTTTTGCGCACTCACAAACTGACACATTTGCCCAAAGAAGAGAAAAAGTTTCCCTGCACAGAATGTGGTAAATTTTACGGCAATTCCTATTTACTAAAAATACACACCGAAGTTGTGCATTTAAAAAAACAGGCCAAAGTCTGTTATATTTGTGGCAAAACATTGGGTACCAGCACTGAGTACAAAACTCATATGAACAAACATGAAGGCATTCCAACACCAGTTATAAATTGTGATGTTTGTGGTTTACGTTTGATTAGTGAAAGGAGCCTAAAGTTGCACAAAGAATCGCAACATCCAGTGGGTGGTAAACAGGACCATCCCTGTCCTATATGTCACAAAATATCACCCACAGCTAGGGCCCTTAAGAAACACATTAATACTATGCATGAAAGGGGCTGTGATCATAAATGCACTATGTGTGGAAAAGCTTTTCGTAGGCCAGAAACTCTTAAGGAACATATAGCTTCACAACATACGGGCGCAACATTATATACATGTCCCTGGTGTCCAAAGACATTCAATTCGAATGGTAATATGCATGCTCATCGTAAAAATGTCCATCCCAAAGAATGTTTAGAGTTAAAGTTACAAAGATATTCAAGAAATATACCGCCAGAAATAAGTTAA
- Protein Sequence
- MDSCLLCLEFNKDFLDFIQVNTMRWQELEITKILEKHFWSLRTIQTGTWLCLTCWKELDSFHKFYLRIEEAHINFGKVNLDKEFKEENVMENLAASCLEPEILIEPNAQEILEDEETTCIKSNNKLDSGKNLLNNDPLEKVVVIKTKNKRNLINKTKTEIKSELHHSSDSASDREEDNNSQESSKEAKQKMERLNRKETDKFIAENFEQMFCDLCGVPFENFSSMQKHFSRKHERKGYLLCCNRKFYERNNLVDHLQCHLNPDYFKCTQCGKILSDRKNFKSHQLRVHRPNDVVLKHSCDICGKSFTQGYVLRTHKLTHLPKEEKKFPCTECGKFYGNSYLLKIHTEVVHLKKQAKVCYICGKTLGTSTEYKTHMNKHEGIPTPVINCDVCGLRLISERSLKLHKESQHPVGGKQDHPCPICHKISPTARALKKHINTMHERGCDHKCTMCGKAFRRPETLKEHIASQHTGATLYTCPWCPKTFNSNGNMHAHRKNVHPKECLELKLQRYSRNIPPEIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -