Lser002099.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- -
- Assembly
- GCA_015586225.1
- Location
- NW:55063-71168[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.8 82 3.7 3.0 1 23 180 203 180 203 0.91 2 14 0.00017 0.0077 16.3 1.6 2 23 386 407 386 407 0.97 3 14 2.2e-05 0.001 19.1 2.8 1 23 413 435 413 435 0.99 4 14 0.0038 0.18 12.0 0.1 1 23 441 463 441 463 0.97 5 14 3.5e-05 0.0016 18.5 6.4 1 23 497 519 497 519 0.97 6 14 1.7 79 3.7 1.1 1 13 522 534 522 539 0.87 7 14 6.3e-05 0.003 17.6 0.8 2 23 617 639 616 639 0.95 8 14 0.0081 0.38 11.0 1.4 1 23 696 719 696 719 0.96 9 14 1.9e-05 0.00091 19.3 0.2 1 23 835 857 835 857 0.98 10 14 0.00026 0.012 15.7 1.0 1 23 863 885 863 885 0.96 11 14 7.1e-06 0.00033 20.6 0.9 1 23 891 913 891 914 0.94 12 14 2.9e-06 0.00013 21.9 3.0 1 23 921 943 921 943 0.98 13 14 0.13 5.9 7.3 8.0 1 23 949 971 949 971 0.98 14 14 0.00091 0.043 14.0 0.1 1 23 977 1000 977 1000 0.98
Sequence Information
- Coding Sequence
- ATGTCGGCCATAGTTATAAAAACGGAAAAGGATGAAGAATGTGAAGATGTGAAACCAGTAATAAAAGAAGGCGGTGGTATAGTACAACAGGGAAGTGGTGGTAGTAGTGTTGCAGCAGGAGGCAACAATGCAAGAACTAGTGGTGTGGCAGCTGGGGGACCAAaagaaattgttgaaaaaacCCAGGCGGCTTTGAAGGTGGCCAACGAAGCCAAGCAATTAAATATAAGATTAAAGGAGCCCCAAAAACTTTTACAACAACAGCCGACCACAAATCCCTTGGGTAAAAGAAGCAGCAGTATAGCAGCAGAGCAATTGCATACAGATAACAGCAATGAAACCACAAATGTACCCTACAAAGTGGGCAATAAACGTTTTCGGGTACAAACACCCGTGCGTTATGCTAAAAAAGTAAATACtcctccaccaccaccacctgCCGCCACACAATTGCAACCACCACCCCCAGCAGCAAGCGCTATGACTCCCGCAAAATGCGGTGAAATATTTGTAACAAACAATGCCCGCAAATGGACTTTTGTTTGCACCTTCTGCCAAAAGTCTACCCGTGATATAGGAGAATTTGTATGTCACATTAAATATAAACACATGCCAACCGATTATCAGGAAGATGAAGACTTTGAGGAAGATGTTAATGATCTATTTGTCACTGGCCAGGAAGATAACTACAATAATCATGAACAAGATTACTTCGATTGTACCAACTATTTGGATGTTAATGTACACACCGAGGCGGATGAACTGCCGCCACAAAATAATGGTGTCAAAGCTAAATTGCAAGCAAAACTCACACGACAATCTACAGCAACaactgcagcagcaacaaaagaCCAACACAAAAGgcaaatggaaaaaagtaaatatattgTGGATCTATTAGATGATGACGAAGACCAGGAACAAGGTCGTGACACTAACGAAAAGGATGTGCAGCAGAAAAACGAAATGTTTGACTATGAAATGGAAGAAGATGAAGACGGTGTAGAGATTGTGGACGATGACAATGATGACATGGAACCTATGGAAGAAGATAATTTATTATTCTTAAGATCTAGCTCTATAGAAGATGCTAACGTTGAGACAGGCGTTAAGGGTAGCAGTAAAAAATATCGTTCCCACGTAAGGGGCAAGGCCTATTGTAATCTATGCGATAAAACTTTCCAATACTATTCGCTATATCGCAATCATATGATCAAACATTCCAATATAACACCGTACAAATGTCAGTATTGCAGTAAAGCCTTTAAATCCAAACAGGCCATACGTTATCACATGAATACGCATACAAAAGAAGTACAATACACTTGTCCACTCTGTCCCATGACCTATGGTACAGAAAATCAATTCATAACTCATGTGCTAAATCATGAAAGTGATACTTGTTTTCCCTGTATGGTGTGTGCGAAAATTCTTAAAAGTGATCAGGAGCGTGATGAACATTTATCAACGCACAGCGAGGAAAGACCCTTCCCGTGTGGTTATTGCAATAAACGTTTTAGACAAAAGCATCATCTATCGAATCATTTGAAATTACACTGTCAATATCGTTGTGATTTCTGTAAAGAGGAATTCTCCTCGACCCAGACACAACGACGTCCTTATGCCTGTGCCTCGTGTGAAGAATATCCCGAGATAAGAATACAGGTAGAGAAACAACGTTCGAAAAATTTAAGTAATGAGGTCAATCCTTTAGAATTATCCTATGATAATATGCCTGCCAATGAAGCGGAGGCCACCGAATGTGTTGATTTGGCCACGGACGATGAGGATGAAGAAAGCGAGAACAGCACTAGTTTGTTGGGTGGAGCTAATGGCCAGAAACGTATTTCTTGTCAATATTGTCCACGTTCTTATAAACAAACCAGTGCTCTTAACTATCATATAAGACAAAAACATCCACAGATTTGGGCAGAAATGAAATTAGCAAAAGAAAAAGGAAATATAGCCCGTGTAAACcaaagaataagaaaaaaagccATGCCAATAAATTTTCAACTATTGCCAGGAGATAAGTATGATGGACGTTGTGCAGAAATCTATATAACGGAAAAACAATTCCTAATCTATCACTGTTCGGTGTGTGAGGAAATCTATACAACATTCAATCAACTTTTAAGCCACATTACAAAAGAGCATTATGAAAATACTCAAGAATTTAAGACAAACGAAAAGAAGACAAGTGTTGCAACAGAAGGCAATGAAGAAAACCAGTTACCTGTAAAAGAGGGCAACAATTTGATGTCTAAGACAATGGTATTAGAAACAGAACCTGCTAAAACTTTAAATGAAACGGAAGAAATTATTCAAACACAGGAGTTAGAGGAAAAAGAgCAATTGGCTGCCCCTTTAAACTTTAGTGTAACTTCGCCACAACGCAAGAAACCCCGCTTTGTAACGGGCATGTTGAAAAACTCTACCGtagctagaactaaactaaattcCTTGACACGTTATCAGTTTAATCCCTTGGAGGAACGTAAATATGTTTGTGGCATTTGTGGTTTTGCTTTTAAGGAGAAATACAATTTGCGTGGCCATCTGCTCAGACACTCCAATCAAAAGAATTTCCCCTGCTCCCTTTGTCCCAAAAAGTTTTACACCAAAGTTGAATTGCGTTTACATGAATATCGCCACAAGGGAGAACGTCCCTATTTGTGTAATGATTGTGGCATGGGCTTTGTTAGCAATGGCTCGCTGACACAACACATTAAAAAACATCATAGTAGTCTACCACATGCCTTTAAATGCGAGCACTGTGATAAAACCTTTCCGAACTTCTATCAATTGCGCGAACATCAATTAGTTCATTCGGAGGAACGTAACTTCAAATGCTGTGAATGTACGTTAAACTTTAAATGCCAAAAGAATCTAAACAGTCATATGAAATTACATGAAAATAAGCGTAAATATCGTTGTGACAACTGTGTTATGGGTTTTGCATCTGAAGCGGCTTTAAACATGCATCAACGCAAGATTCACCAATTTAAAGATGAAGATGAAACTACAATTGAGGTGGTTATAGAAAGACATGAGCTAGAGGATAAAACAGAAAATACTGATGATAGCCTTGCAGAATTTATAATTGAAGAGGGAGTATTGGCTGTGGAACAAAACTTTGATGAATATGAACTGGTACAAACACTTACAGATTTGGAGTGTAATAAAAATGCTTAA
- Protein Sequence
- MSAIVIKTEKDEECEDVKPVIKEGGGIVQQGSGGSSVAAGGNNARTSGVAAGGPKEIVEKTQAALKVANEAKQLNIRLKEPQKLLQQQPTTNPLGKRSSSIAAEQLHTDNSNETTNVPYKVGNKRFRVQTPVRYAKKVNTPPPPPPAATQLQPPPPAASAMTPAKCGEIFVTNNARKWTFVCTFCQKSTRDIGEFVCHIKYKHMPTDYQEDEDFEEDVNDLFVTGQEDNYNNHEQDYFDCTNYLDVNVHTEADELPPQNNGVKAKLQAKLTRQSTATTAAATKDQHKRQMEKSKYIVDLLDDDEDQEQGRDTNEKDVQQKNEMFDYEMEEDEDGVEIVDDDNDDMEPMEEDNLLFLRSSSIEDANVETGVKGSSKKYRSHVRGKAYCNLCDKTFQYYSLYRNHMIKHSNITPYKCQYCSKAFKSKQAIRYHMNTHTKEVQYTCPLCPMTYGTENQFITHVLNHESDTCFPCMVCAKILKSDQERDEHLSTHSEERPFPCGYCNKRFRQKHHLSNHLKLHCQYRCDFCKEEFSSTQTQRRPYACASCEEYPEIRIQVEKQRSKNLSNEVNPLELSYDNMPANEAEATECVDLATDDEDEESENSTSLLGGANGQKRISCQYCPRSYKQTSALNYHIRQKHPQIWAEMKLAKEKGNIARVNQRIRKKAMPINFQLLPGDKYDGRCAEIYITEKQFLIYHCSVCEEIYTTFNQLLSHITKEHYENTQEFKTNEKKTSVATEGNEENQLPVKEGNNLMSKTMVLETEPAKTLNETEEIIQTQELEEKEQLAAPLNFSVTSPQRKKPRFVTGMLKNSTVARTKLNSLTRYQFNPLEERKYVCGICGFAFKEKYNLRGHLLRHSNQKNFPCSLCPKKFYTKVELRLHEYRHKGERPYLCNDCGMGFVSNGSLTQHIKKHHSSLPHAFKCEHCDKTFPNFYQLREHQLVHSEERNFKCCECTLNFKCQKNLNSHMKLHENKRKYRCDNCVMGFASEAALNMHQRKIHQFKDEDETTIEVVIERHELEDKTENTDDSLAEFIIEEGVLAVEQNFDEYELVQTLTDLECNKNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -