Lser000988.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lucilia sericata
Gene Symbol
-
Assembly
GCA_015586225.1
Location
NW:13533-20975[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.13 5.8 7.3 1.1 1 23 277 299 277 299 0.95
2 13 0.011 0.5 10.6 1.2 2 23 379 401 378 401 0.95
3 13 1.9e-06 9e-05 22.4 1.5 2 23 685 706 684 706 0.97
4 13 0.00011 0.0051 16.9 2.9 1 23 712 734 712 734 0.97
5 13 8.3e-06 0.00039 20.4 3.3 1 23 742 764 742 764 0.99
6 13 0.045 2.1 8.7 0.1 1 23 770 793 770 793 0.97
7 13 0.0093 0.44 10.8 5.5 1 23 965 987 965 987 0.98
8 13 0.0052 0.24 11.6 0.9 1 23 993 1015 993 1015 0.96
9 13 0.0055 0.26 11.5 6.8 1 23 1021 1043 1021 1043 0.98
10 13 2.6e-07 1.2e-05 25.1 0.2 1 23 1049 1071 1049 1071 0.99
11 13 0.00037 0.017 15.2 5.0 1 23 1077 1099 1077 1099 0.98
12 13 2.7e-05 0.0013 18.8 3.8 1 23 1107 1129 1107 1129 0.99
13 13 4.6e-05 0.0022 18.1 0.4 1 23 1135 1158 1135 1158 0.97

Sequence Information

Coding Sequence
ATGAAATCTCAAGTTAACAAAATGATCAACACTTTATTGGAGCATGTGCCCATTAAAATGGAAGTTACTGAAGTGGAGGAAGAGGAGGTCAATGAGAGACCAGCTAAAGACTTGAAGGCAGTAGAAATGGCTAAAGAAGATGAGGATATAAATGAGACAGATGAAGATTTGGATGATGAGGATGAAGATGATGAAGAAGACGATGAGGATGACGAAGAAGATGAGGATGAAGAAGAAGAGGAGTCTGATACCGAAACCGATGCCTTAGAAATTGAGCAAGAAGCCACCATGTTAATAAGCAGTGATGAAGAAGCTGAATTGGAAGCCCAAAGAATACGCTTCCCGGACAAAATCGAAGGCAAGAAATCCAGACGCGATTCCTTAAAAACATCACGCAGTTCTTCCAGGAATAGCCAAAATAGTAATAGCTCTTCCACTAAATCTGTTAACAAACTAAAAAACACAGATGAAAACAACAAAGAGGAAACTCAACAGAAACAAAGAATTTCACCTCGCCTCAAGCTGGCAGAGAACACTTTAGCAGCCGAAAACTTACAAAAAGAGCcacacaataacaacaacaacaacactaacaCTATAACAGAAAAGAAAACGCAAAATAAATTACAGGAAaataatgacaaaaacaataaaccCCTACAGCGGGTAAATTCCAGCCAACCTGTAACACTCTCCATTCCTCCAGCCAAAAGTCGCCGTGGTAGTAATAACTCCACCTGTAGTCTAGCTTCCACTATAGGCTCTGATACTTCGGAAACAGAATCCTGTGGCAATATATACGTTTTCAATCTACAACAAAAACTCATATTCAATTGTGAGTTCTGTGATCTGAAATATGGTGATTTGGAAAACTTTGGTCGACATCTCCATGGCCATAAACTCTTCCATTTCGATGAAGATCCTGAAAAGGAAAATGCCCCGCGTAAATGTACGTAAAGCAATCGTAATAATGCGCCAAAAGTAAACACCACCTCTATCAAGAAAGAACCTCTACAATGTTTTGATTCAACAACTATGGCGCCAGAACCACCTGTTGCCTTGCCTCTATCCGTTTTAGCCGCCATAGAATCGTGTGGCAATGTTTTCATGCTGAATCATCGTAAATTGTTTTTAGTCTGTGGCTATTGTGAGTGTAAATATGCGAATTTGGATTTGTTTGAGAAACATTTGCGTCAACAGCATCGCATTTTTGAGGGTTGTCGCAATGAGTTGAATGTGGTGCCTAAAGTGGAGATAAAACAAGAAATGTTTGTTATTAGTGATGTGGTGGGTGGTCAATCAAGTCGTGCTGCCTCCTCAGGCTATGGTTCCATACCAGCAGAAATTCCTTTAGATATTAGCATATCTCCAGAAAATGAGCCCAACCCTACAGTTGTAAATATCTCGGAAAGACTCGTTCCTGCAGGAACAACTCAAGTTATGGAAACTGTAAATATCATTGAAGCTGTAAAAACTATAGATAATGAAGACAACAACTCAGCCGCAGCAATCAAGAAATTACAAAACAATAGAACCAAGAAAACTGCAAAAACCGCACAAAATAAAGCTGCAACTGTTGTGGATACGACAAAACATAAGGAAAATAAGAAAGCGACAAAAGCTGCAGAAGCCAAGAAACCAGCAGAATCGGTAGAACCAGCTGAAATAGAAACGAAAGAATCAAGGAAACTTGCGAAAACAGAAGCTACAGCAAAGGTAGAAGTCAAAACAACGACAAAATTGCAAGAATCTAATGAGGAAGCAACTGCTGTAGAGTGCACAGCAACCAAAGCCAGAAGAAAATCAACAAGAGCGGTGGATTTAAATAAACCAGCAACACCAGAACCAGTAGAAGTTGTTGAAAACCAAAACCTACAAAATCAGAAGCAGCAACAACTAGTAGAACCTATAGAGGAACCTATAACAACACAGGAACCGGCAGCAACTAAAGAAACCAGCAGAAAGTCTAGCAAACCGgcagaaattaaaaaacttaccaAACAGGAAGTAACTGAAACCGAACTAGAGCCGGAAACTAGTGATAATGAAATGCAATGTGATGAATGCGATAAGAAATTTACACGAAGAGAAAGTTTAAAAATCCACAAGAGAGTACACACCGGCGAAAAACCCTTCCAGTGTGATATTTGTCAAAAAAGTTTCCGAGCCAAACAAAACCTGACCATGCACAAAAAGTTTCACATGGGAGAGGCTTCGAAAAACTTTGAATGTGAACATTGCGATAAAAAGTTTCTACGTAATACCGATCTTAAGGTGCATATGAGAACGCATACGGGTGAAAAGAAATTCAAATGTGGCATTTGTCTACAGGGTTATGCTTCCAAACTTAATGTCCAAACACACATTGAAAGAGACCATTTGCCAGAGGATGGTGTGGTGGGTAAACCGCCTAGAGGTAAAAAGAAATCAGGACCCAATTCTAAGGTTTTAAGAGAAGAATTggaatatcaaaagaaaataatacacGAACTGCAACAGGCTAAGATAGAGAAGGATATTAATAAAACTACTTTGGGTACAGCTCCAGCAGCAACAGCTCTTAGTGTAGAAAAGCAATTGCAGGCAGAAACCCTTCAttatcagcagcagcagcaggatACCGAAATGCAAGATCTTAATGCTGATCCTGTCAATGATATTATagaacaaatacaaaatgaaatacTTTTAGGCGAACAGCAAAGACAACCGGAAAATACACAAGTCAATGCCGTAACCTATATCATTAATACGATGTCTGAACCCAATGAAGTATTAAATCTAACAAATGATACAACTAACAAGACAACCCTTATACTAGAGCCACAGCCCAATGAATTATTAAATTCTCCTGAAGATATTAAACCCACTTTAATGCAGGTAGTTAAACGTTATTGCTGTGAACAGTGTAATCGCTCCTTTAAGAAACACATACGTCTGGTGGAACATCAACGCGTGCATACGGGTGAAAAACCTTTTGAATGTGATGAATGTGGCAAACAGTTTCGCATACGCATGCGTTTAAGTGAACACAAACTACGACATTCCAAGGAAAAGAAATTCAAATGTGAAGTCTGTAATCTGGGCTGTTGTACTAAACAGGATTTAAATCTACACATGCGTCATCATACCAATGACAGACGTTTCCAATGTTCCATGTGCCCCAAGGCATTTGTACGTAGTTCAGATTTGAAAATACACGTACGCGTTCACACCGGTGAGAAGCCCTTCGTTTGTGATATTTGTCACAAATGTTTCCGAGCCAATCAGAATCTAAGTGTTCACAAAAAATCTCATATGGGTGATGCTTCCAAAACCTATCAATGTGAACATTGTGATAAGAAATTTATGCGTAATATTGATCGTAAAGTTCACATGAGAACTCATACTGGAGAAAAGCCTTATAAATGTGAGATATGTCAACGTGGTTACTCTTCTAGATATAATGTACGCGCTCATATAGAAAGAGATCATATATCGCCTCATGGCGTTGGATCGCCACCTAAAAGTAAAAAGCGTCCTGGACCTAAACCTAAAGGTTTAAAGGCTGAAttggaaaaacaaaagaaacttaTAGAGGAACTACAAAATCAACtattacaacaaattaaaactGATGAAAAAATCATTAACTGTGAAGAGGAAATCTTACCCCATGATACTCTACAAGATAGCACCATAACGGCTTCCACACCTTTAATCAGCAGCTCCAACATAAGCCATGATCCCATACAAAGTGCTTATGATTTACTAAATAAACTCAAATCGGCCTCAACTACCTCTAAACCTTTAACTATAATACCCTCTCCACCACCTCTAAAGGACATTGGCTCTAATCCCTTTACCAAAGCCAAAAAGGCCGCCACTTCCACATTACTACCTCTTACTATAACACAAAAAATTGAACAACATTCACCGGCTCCTTCAACGGCCTCCTCTAACACGTCACTATCATGTCTCAGTACACCCTCACCACCCAAGACCACAGCCACTAAAGTAGTGTCACAAAAAACCTCTTTAGGTATACAACAAGTATCGGTGACAGTGTCTATGCAAGTGGAAAATGTAACAACAGCCACTACTCCTACTACTCCCGAAAAAGAGAATGCTGGCATTTTGACAACAAGCACAACAAGCGGTGGTATACAAACAACGACATCATCGGCGTCTAGTGTTAAGAAAGAAAGGAAAATAACAAGTTATTTTACGGTGGTGGGTCAAAAGGCAGATGTTTAG
Protein Sequence
MKSQVNKMINTLLEHVPIKMEVTEVEEEEVNERPAKDLKAVEMAKEDEDINETDEDLDDEDEDDEEDDEDDEEDEDEEEEESDTETDALEIEQEATMLISSDEEAELEAQRIRFPDKIEGKKSRRDSLKTSRSSSRNSQNSNSSSTKSVNKLKNTDENNKEETQQKQRISPRLKLAENTLAAENLQKEPHNNNNNNTNTITEKKTQNKLQENNDKNNKPLQRVNSSQPVTLSIPPAKSRRGSNNSTCSLASTIGSDTSETESCGNIYVFNLQQKLIFNCEFCDLKYGDLENFGRHLHGHKLFHFDEDPEKENAPRKCT*SNRNNAPKVNTTSIKKEPLQCFDSTTMAPEPPVALPLSVLAAIESCGNVFMLNHRKLFLVCGYCECKYANLDLFEKHLRQQHRIFEGCRNELNVVPKVEIKQEMFVISDVVGGQSSRAASSGYGSIPAEIPLDISISPENEPNPTVVNISERLVPAGTTQVMETVNIIEAVKTIDNEDNNSAAAIKKLQNNRTKKTAKTAQNKAATVVDTTKHKENKKATKAAEAKKPAESVEPAEIETKESRKLAKTEATAKVEVKTTTKLQESNEEATAVECTATKARRKSTRAVDLNKPATPEPVEVVENQNLQNQKQQQLVEPIEEPITTQEPAATKETSRKSSKPAEIKKLTKQEVTETELEPETSDNEMQCDECDKKFTRRESLKIHKRVHTGEKPFQCDICQKSFRAKQNLTMHKKFHMGEASKNFECEHCDKKFLRNTDLKVHMRTHTGEKKFKCGICLQGYASKLNVQTHIERDHLPEDGVVGKPPRGKKKSGPNSKVLREELEYQKKIIHELQQAKIEKDINKTTLGTAPAATALSVEKQLQAETLHYQQQQQDTEMQDLNADPVNDIIEQIQNEILLGEQQRQPENTQVNAVTYIINTMSEPNEVLNLTNDTTNKTTLILEPQPNELLNSPEDIKPTLMQVVKRYCCEQCNRSFKKHIRLVEHQRVHTGEKPFECDECGKQFRIRMRLSEHKLRHSKEKKFKCEVCNLGCCTKQDLNLHMRHHTNDRRFQCSMCPKAFVRSSDLKIHVRVHTGEKPFVCDICHKCFRANQNLSVHKKSHMGDASKTYQCEHCDKKFMRNIDRKVHMRTHTGEKPYKCEICQRGYSSRYNVRAHIERDHISPHGVGSPPKSKKRPGPKPKGLKAELEKQKKLIEELQNQLLQQIKTDEKIINCEEEILPHDTLQDSTITASTPLISSSNISHDPIQSAYDLLNKLKSASTTSKPLTIIPSPPPLKDIGSNPFTKAKKAATSTLLPLTITQKIEQHSPAPSTASSNTSLSCLSTPSPPKTTATKVVSQKTSLGIQQVSVTVSMQVENVTTATTPTTPEKENAGILTTSTTSGGIQTTTSSASSVKKERKITSYFTVVGQKADV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-