Basic Information

Insect: Lucilia sericata
Gene Symbol: -
Assembly: GCA_015586225.1
Location: NW:58360-62320[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.021 1 9.7 1.3 1 23 186 208 186 208 0.97

2 11 1e-06 4.9e-05 23.3 1.9 1 23 214 236 214 236 0.99

3 11 8.4e-06 0.00039 20.4 0.7 1 23 242 265 242 265 0.95

4 11 0.012 0.55 10.5 4.8 1 21 271 291 271 293 0.95

5 11 4.9e-05 0.0023 18.0 2.1 1 23 299 321 299 321 0.99

6 11 3.3e-05 0.0016 18.5 1.5 1 23 327 349 327 349 0.98

7 11 0.00048 0.022 14.9 4.5 1 23 357 380 357 380 0.98

8 11 0.00051 0.024 14.8 0.5 2 23 387 408 386 408 0.97

9 11 0.0026 0.12 12.6 1.9 1 23 414 436 414 436 0.98

10 11 1.7e-06 7.8e-05 22.6 0.5 1 23 442 465 442 465 0.97

11 11 5.9e-07 2.7e-05 24.0 3.0 1 23 479 501 479 501 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.021	1	9.7	1.3	1	23	186	208	186	208	0.97
2	11	1e-06	4.9e-05	23.3	1.9	1	23	214	236	214	236	0.99
3	11	8.4e-06	0.00039	20.4	0.7	1	23	242	265	242	265	0.95
4	11	0.012	0.55	10.5	4.8	1	21	271	291	271	293	0.95
5	11	4.9e-05	0.0023	18.0	2.1	1	23	299	321	299	321	0.99
6	11	3.3e-05	0.0016	18.5	1.5	1	23	327	349	327	349	0.98
7	11	0.00048	0.022	14.9	4.5	1	23	357	380	357	380	0.98
8	11	0.00051	0.024	14.8	0.5	2	23	387	408	386	408	0.97
9	11	0.0026	0.12	12.6	1.9	1	23	414	436	414	436	0.98
10	11	1.7e-06	7.8e-05	22.6	0.5	1	23	442	465	442	465	0.97
11	11	5.9e-07	2.7e-05	24.0	3.0	1	23	479	501	479	501	0.98

Sequence Information

Coding Sequence: ATGACCGCCATCAACAATGATCCAGATTATTTTCAAACCTATTTGGAAAAATTGGAGGAAGATGAAGACGATGAATTAAACAATGAAGTTATTCAATCGATAAAGAATGATTTTGTTACAGAAGTAGATGATAATGGTAGTGTTGATGAGGAGAAGGAAGCAGAAGATCGTGGTGCCATAATAATGGATGCTGAGggtaattattattttcaaacgtCGAAGGAAATTGTAAAAGTAGAACCTATAAGCAAGGTTTCACAAGCTCCGGCAGCTGTGGTCACTCCCAACAATAAGCGTAAACCAAAAGCCCAAGCTGCCTCAGTTTCAACAAAGAAGACCAAATTATCTAATAATAAATCTGTtaaaaaggaaaacaacaaTGTAAAACCTGCAGATGAAACCGCAAACTCTGAATTTATTTTACAAGAAGAAGTTTACGAATTCGATGAAAATGAACAAGATCCTGATGATCCCGGCGTCGAACCTGATGCAGATTATGGCTCAAAAGGATTATTAAAAAGTGCGAAAAAGTCTTCGGCAAATGAAGAAGCAACGTTTATTTGTATGTTGTGCCCCTATCAGACAGCCAAGAAATTCTTATTATCCAGACATTTGAAAAAACACTCGGACGAACGTCCCTATAAATGTACCGTATGCGAAAGAGGCTTTAAAACGAATTCATCCCTGATGAATCATCGTAATACTCATTTGGGCGTTAAGCCTCATGCTTGTAAGGATTGTGATATGGCCTTTACCACATCGGGAGAGTTGGTGCGTCATGTACGCTATAGGCATACACACATTAAACCTCATAAGTGTACTGAATGCGATTATAGCAGTGTAGAAATGAGTAAATTACGGCGGCATATGCGCTGTCATACCGGAGAACGACCCTATCAATGCCCCCATTGTACATATGCCTCCCCGGATACGTTCAAACTTAAGCGTCATATGCGTATACATACCGGTGAGAAACCGTACGAATGTGATATATGTCATGCACGTTTTACCCAATCGAATTCTCTTAAACTTCATCGTCTTATACATTCTGTTAATGAGAAACCTGTCTTTCAATGTCATCTATGTCCCACGACGTGTGGACGTAAAACAGATTTACGTCTACATATAAAAAAGCTGCACAGTTCTGATCAACCAATACCCTGTAAGCGGTGTGGTAAAGAATTACCCGATCGTTATTCGTATAAGATGCATTTGAAGACACATGAAGGTGAAAAATGTTTCCGCTGTGATTATTGTCCGTATGCTTCCATTTCGGAGCGTCACCTTGAATCGCATCTTCATATACATTTGGATAAGAAACCATTTATATGTGAGATTTGTAATACCAGTTTTCGTCAGAAACCACTACTTGTTCGTCACATGAAAATTTACCATTCCGATAATTATGAACCACCACAATCACGTAAAAAGGATCACAAATGTCCACattgtaataaaatgtttgcaTTCAATGGAAATCTTATGCGTCATATGGAAATCCACGATCCCACATCTGATCTAATGAAAAAGAAAGAAGCATTGAAAGTGGGACGTATGACACGTGTTAGAATGGATGGTACTGTTGTAGCATTACCCCCAACAAATTGCTTCATGGAAAATAATAGTGAGTACGGGTATGATGATAATAATATTGGGGAggagcaacagcaacaacaaatcgatGATGATGAAGTAATACCAGAAGAAGGGTATGAAGATGAAGAGGAGGAGGAAGCGGAGGATGAAGAGTACAATGAggaaaatatacaatatgtcTATGATGAATTAGAAGCTGATGAGTATGTAGAACAAGAATACGAAGAACAGCTGGAGGAAGCAACTGATGAAAAGTCCCTAATAGATGTAAAAATGGAAAAACTAGAAACGATTGTTACTCCCCAGCCAGCACTTAAACAATCTATTATCCTCAAGGGAAAAGATAATGAAGCCAAAATAATGTCTTTAGAAGTTAATGATGATCAAGATTTTATGGTTATAGAAGTTTTAccagatgatgatgatgatgaagaagagTCGCAAGAAGTAATAGCACAAGTACAGCCACAACCAGTTAAATCTACAACAGCAAACAAAAATACTAACAAAGCTACAGTTATAAAAACTCAGAAAAAAGCACAGTCACTTATATCAGATTATTTTGGATTTGAAGTTGATCAAGATGACGATGACGATGAAACCAAAGGAGATATTAAGTTATTAGAAATGATTGAACAAGAGTAA
Protein Sequence: MTAINNDPDYFQTYLEKLEEDEDDELNNEVIQSIKNDFVTEVDDNGSVDEEKEAEDRGAIIMDAEGNYYFQTSKEIVKVEPISKVSQAPAAVVTPNNKRKPKAQAASVSTKKTKLSNNKSVKKENNNVKPADETANSEFILQEEVYEFDENEQDPDDPGVEPDADYGSKGLLKSAKKSSANEEATFICMLCPYQTAKKFLLSRHLKKHSDERPYKCTVCERGFKTNSSLMNHRNTHLGVKPHACKDCDMAFTTSGELVRHVRYRHTHIKPHKCTECDYSSVEMSKLRRHMRCHTGERPYQCPHCTYASPDTFKLKRHMRIHTGEKPYECDICHARFTQSNSLKLHRLIHSVNEKPVFQCHLCPTTCGRKTDLRLHIKKLHSSDQPIPCKRCGKELPDRYSYKMHLKTHEGEKCFRCDYCPYASISERHLESHLHIHLDKKPFICEICNTSFRQKPLLVRHMKIYHSDNYEPPQSRKKDHKCPHCNKMFAFNGNLMRHMEIHDPTSDLMKKKEALKVGRMTRVRMDGTVVALPPTNCFMENNSEYGYDDNNIGEEQQQQQIDDDEVIPEEGYEDEEEEEAEDEEYNEENIQYVYDELEADEYVEQEYEEQLEEATDEKSLIDVKMEKLETIVTPQPALKQSIILKGKDNEAKIMSLEVNDDQDFMVIEVLPDDDDDEEESQEVIAQVQPQPVKSTTANKNTNKATVIKTQKKAQSLISDYFGFEVDQDDDDDETKGDIKLLEMIEQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00921566;
90% Identity: iTF_00921566;
80% Identity: -