Lser010126.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- hang
- Assembly
- GCA_015586225.1
- Location
- NW:164956-192462[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.13 6.2 7.2 0.9 3 23 256 277 255 277 0.92 2 18 0.27 12 6.2 3.4 3 22 380 399 378 399 0.90 3 18 0.005 0.23 11.7 1.1 1 22 474 495 474 497 0.90 4 18 0.0013 0.06 13.5 0.2 3 23 616 637 615 637 0.96 5 18 3.4e-05 0.0016 18.5 0.1 1 23 645 668 645 668 0.96 6 18 0.00014 0.0065 16.6 0.1 2 23 757 778 757 778 0.97 7 18 0.0011 0.05 13.8 2.7 2 23 828 850 827 850 0.95 8 18 0.0043 0.2 11.9 0.2 2 23 859 881 858 881 0.95 9 18 0.003 0.14 12.4 0.1 1 23 894 917 894 917 0.95 10 18 0.00013 0.0063 16.6 1.1 1 23 976 998 976 998 0.99 11 18 0.0021 0.097 12.9 0.9 1 23 1006 1029 1006 1029 0.96 12 18 0.027 1.3 9.4 0.2 2 20 1037 1055 1036 1055 0.95 13 18 3.4e-05 0.0016 18.5 0.1 3 23 1121 1141 1120 1141 0.98 14 18 0.00056 0.026 14.7 0.4 1 23 1176 1198 1176 1198 0.97 15 18 0.00032 0.015 15.4 0.8 2 23 1284 1306 1283 1306 0.92 16 18 1.6 76 3.8 0.0 3 19 1327 1343 1326 1345 0.92 17 18 0.11 5.2 7.4 0.9 3 23 1361 1381 1361 1381 0.97 18 18 0.00062 0.029 14.5 0.7 1 23 1642 1664 1642 1664 0.98
Sequence Information
- Coding Sequence
- atgtCGGATGAACAACGACATCATATACAGccgcagcagcaacaacagcaaaatcaGCCATCATCACAGCAGCTGCAGAGGAGACATAATTGTTGTCGCCTTTGTTTAGCTCCAGACAATGAATGTATATCCATTTTAAACAGTTATGCTGCCGACAAAGAACCCTTGGCAAGCAAGATACATACTTGTGTATCCGTAAAGATTTCCAGCCATGATAACTTATCATTACGTATCTGTCATGCCTGCATAAGTTACCTTAACTCTTGGCAGTCCTTTAAGAATCGTTGTCTAGCCGCACAAGCCAAACAGCGTACATGGCTAGAGGAAAAACATTCAAACAAATCTGCcgaacaacatcatcatcaacaaacaGCAGATAATCATTATGAtgatcaacagcagcagcaacaccaCCACCAGCAGCaagaagaacaacaacaacagtcatTGGCTTCTTCCATATTGGAGGGAAtatcaacattaaaaaaacgcAAATCTTTAACAGTCTATCCGTTACCTGCAGTACAAATAAAAGACGAACCACTTGAGGCAGATGATGATTATAATGGAGctaaacaacagcagcaacatgaTGAATCAGATGAAATGGTAGTAGATCCTACGATGTTTTTAGAACGTACCGCCGATGAGGGTGATTTTATGgAATCCACTTCCAACTACGACTATGATGTGATAAGACCACCAGCCGATCTAAAGCCTTTACCAGCCAGTACCACCATACGTATGAGTACTAAAGATGCTGCTTGCCGTGCttgtaatttgaaattttcaacacGTGCCAATGCTAGACGCCATGAAAAAAATCTACATCCCAATCTCTTTGAGACGCTAGAGGAAAATGATCAatctataaataaacaaaccgCCGCTTTAAATGCCTCCTTAGAACTGCAACGTGCTGTAGCTGCCGCTGTGGCTGCCGATGCTTGTAAATTATCCAGTGGTGCCGTGATAACACCACAAAAATATCGACAAGAAGTTGTTAATGCTTTCAATAATAGCGAATTTGGTTTTGATTATGATAATCCCGAAAAGTATCGTGAACTTTTGACCGATGAGAAAATTATTTTCCTACAACAAAACGATGAATTCCTGAGACAATATCAAAATATGACTTGTCGTTGTTGTAATAAATACTATTCAACCTATAAGAATTTCATGGCTCACATGCGTAAAAAGTACCTAACATTACCCAGAAATTGTTGTTTCAATTGTCTGAAATTGAATGATTCCAAAGCATTGTTTATATCTCATCTGAAAAAGCGTAATTGTATAAATCTTCATAAAGTGCTGCATAATCTAATGGCTAGAAATGCTAATTTTGCAGCTGCTGTTACCGCAACAGTAGCAGCCGCTCCCGAAAAGGTACGCGCCAAAGAACTGTTGGTCAATAAAATGTACGAGTGTAAACTGTGTCCTAAAACTTTCCGTTTAAAATTGGAATTTCGTTCGCATGTCTATGATGAACATGCTGATGTTCAGCGTAAAGATGTTAGCAGTACGCAGTGTTGTTATTGTGCCGTTGATATTGAAGATCCTGCTGATCGCAAACGTCACTACAATAATATGGATTGCATTGTCACCTTGCGTTGTGTTACTTGCGATACGAAGCATGAAACTCAACAAAAGTTTATGGAACATGTACAAGAAAAGCATTTGGCCAATTTTGGTGAACAGACAAAATTCTTATTAAGTGCTGATAATTCGCCAAGTAAAATGATGGGAGGAGCCTCCTCAGCAGACGACTCACGCAGTGGTCACTTTAATGTCTCGCTCATTAATACCACACCCAAAACACAATATTTCTCACGCATGCCACAGGCCTGTCCGATATGTGGCCAACAATATAATAACTACAATAATGTCTTACGTCACATGGAGTCTAAACATCCCGATCAATTGCCACAAACCTATAAATGTGTAAAATGTGGACAAGGTTATCCCCGGCTATCGAATTTAAGAGAACACATGGTTAGTGCTCATGGAGCGGACAAAGCACGACATACTGGTTTCGAATACATAGTAAATGCTGATGCCGTTAAGGCCGCAGCCGGATCTACAGCGGCAGCACCACAAAATCCCTATACAGGTCGTTATGATTATGTGATGAAGGATTTAATGTCTATAACAAATGGTGGGACAGTTGatGAAGATTGCGAAAGTGAAAATGCTTCTAAGAAAATGCGCTTGGAACCTAATATAGCTCTAAATAACAACAATGGTTCGGTGACTAATGCTAGTCCACGAGAATGTTCAATTTGTAATGCTGTCTTTGCTAATAATATTGGTCTATCCAATCATATGCGCTCTCACCAAAGTgctcaaaataataattttggtaTTTCATCTAGCAAAACGGTGGCAGGAGGTAATGCTGCTGTACAGTCCTCTGTGGGGGGACAACAGCAGATATTAAGAAAATCTTTGGAACAGGCAGCCGATAGACGTTTTAGACGCATGCGTTGTCGCATTTGCCAAAGACGTTTCTCCTCCAAAAAATCCTATCGTTATCACATGCTCAATGATCATCAAATACGCAATGTACAATTTATCAAATGTAAACTCTGCGATGCTGAATTTGCCTACGAGAAGGGCTTGAAAGTGCACATGTTTAAGATACACAATACTTTGCTCAAGGATGATATGATTATTAAACAATATGAATGTGAAATATGCTCCATTGTCTATCGTACAGATGTAGAGCTGCAACATCATTTGGCTAATGTACATAATAAACAAGGAGGCTCCTCCAATATAAATGAAGACGATGATGCTTACAATGCCGATGAGTCTATGGCTGCCGGTTTGGTAGATAATAGTTCTGTGGGAGCTGATTTATCGGGCATTTCGACACCGGTTAGTAATGTGGGTTTGGGTGACACCCAAGCGGGTCCTTTATATTGGTATCAGTGTAAATATTGTCCCTCCAACTTTAATACCAATAAAAAATTGGCCATACATATCAATTCTCACGATGAATTTGATTCCAATGATTATTCTTGCAAAGATTGTGGTAATGTCTATAGTGGACGTAAAAGTTTATGGgTTCATCGCTATAAGAAACATCCCCAAATACCCGAACCCTCGGAGTGTGTGATGTGCAAGAAGGTATTCTTTGATGCTCAAATGTTGGAACATCACATACCATCCTGCAATCGCAAACCTATTACCCAGACAGCCAGTGAAACTGCCACTGCAGTGTATAAACACAAAACCGGAGACGATGAGGATGATGAAGACGATGAGCAATCCCGTGATGGTGAAAATACTCTTTCCAACACCATTAATGCTACTGTGGGCAGTGCtagtaatttgaaaataaaattaccaGAAGTTGCTTGCACTATTTGCGGCGCCCGTTTCACGGACCAGGATCTCTTTGCCAAACACATACAAATGCATGAAATGGAATTGTATACCGACAACCCCTTGGCGGCCATGTTCGATACTGGCCCCGCCGATCCTAATCAATTCTATATGGATCGTATTAATGATAATGGCGAGTATGCATGCGATTTGTGTGCAAAGACATTTACACAAATGACAGCACTTAAAGTGCATAGGAAATGGCATTTCAGAGGTGATAGCAAACAGaacGAAGCCGATCAACATATGTCGAGCAACAGCAATGTTcaactacaacagcaacaactcaACCGAAatcaacaactacaacagcagGCACAACATCAACAGCAGTCCAACAAATCCAAGATGCCGATCAACCCTCAACATCTACTGGGATTACAAGCGGTGGGTCTAATGCCGCGTCAATTTGCCAATATGGGCGGCGCCAATCATCGACCCCAGAAACGTAAACGTGAACTTAAATGTCAATATTGTCCTTCAACCTTCATCAGTAATAATAATTTGCGGCGTCATCTCTATGAATTGCATAAAAATGAAATGGGTCATTTGCCTGAGCCACCAAGAATTGAATGTGATCCCGCAAATATGTGTGGTAGATgtaatattaaatttgaaacaaaagCAGAATGGATTGAACATAAAGTGGCGGAAGCTAGGGTCATGAGACCCTATGGACCATTCCAATGGGGTTGTGATTTATGTGGAGCGTATGTTTCACGCAAGGAGAAGTTAATAAATCATTTGCATAATCACATGAAAGAACCAGTAATAGTGCCGGTGGAACATCCAGAGTCCaataaacaacagcagcagcaacagtctCAGCAAGTTGCAGCTCAAACAGCAGTACAAACTCAAAGCCAAAATCCAACACAACAGCCAGTGGAGGAGGGCAGTGATGTTATGCCGGAATTTAAGAAGATTAAAATACCTTCCTTGCCACGTAAACCCGATGAAGAAGAATCTAGGGATAGTGTTAAAGATCAATATGATGAAGACGATGAGGATGATGAAGATGAAGAGGGAGAGCAAGAGCAAGAAGCTGATGTGGACAATAATAATGAAGTTGAAAAACAACAATCACAgtcacagcaacaacaacaacaacaacgacgacCTGCCGTAGAAGAATTCGATGAAGAcgaggaagaagaagaagaggaaCCTGTAGAAGGTGAAGAATTTGATGATTTGGCAGTGGGAGCCCAGCAGACAGTGGGTGGTGATGATGAAGTCGATGAGGATGATGAGGACGATGACGACGATgaagatgatgacgatgatgatagTAGTGATGCTGATGATGAGGATCCCTCTACCAACGAAGACACCAATGAGGCCTCTAGTCTTAAAGGGGGTGTTAACAAACCCCCTGAACTACCACAGCCACGCAGCTACAATGACACGGAAGTCGAGGGGGAAGAAGATGATTCCGATGAATtcgatgatgatgaagatgataaTTCCTCAACGGAAAATCGCAAACCACCCGCCTCATCAGTAGTCAATAGTAATGTGGTGGTAAAATCTCGTTATTCCTGCGATTTATGTCAAGTGTATTTCGATTCACAGCAAGAACTGCAAAAGCATGTTAAAATGCATTTTCTTAATGGACCCGGTTCGGTAACACTAACCGAAATCAAATCCTCCAAATCATCATCGAACAAAAGTCGCAGCAGTAGTAGTGATGTTTTGGCCGTATAG
- Protein Sequence
- MSDEQRHHIQPQQQQQQNQPSSQQLQRRHNCCRLCLAPDNECISILNSYAADKEPLASKIHTCVSVKISSHDNLSLRICHACISYLNSWQSFKNRCLAAQAKQRTWLEEKHSNKSAEQHHHQQTADNHYDDQQQQQHHHQQQEEQQQQSLASSILEGISTLKKRKSLTVYPLPAVQIKDEPLEADDDYNGAKQQQQHDESDEMVVDPTMFLERTADEGDFMESTSNYDYDVIRPPADLKPLPASTTIRMSTKDAACRACNLKFSTRANARRHEKNLHPNLFETLEENDQSINKQTAALNASLELQRAVAAAVAADACKLSSGAVITPQKYRQEVVNAFNNSEFGFDYDNPEKYRELLTDEKIIFLQQNDEFLRQYQNMTCRCCNKYYSTYKNFMAHMRKKYLTLPRNCCFNCLKLNDSKALFISHLKKRNCINLHKVLHNLMARNANFAAAVTATVAAAPEKVRAKELLVNKMYECKLCPKTFRLKLEFRSHVYDEHADVQRKDVSSTQCCYCAVDIEDPADRKRHYNNMDCIVTLRCVTCDTKHETQQKFMEHVQEKHLANFGEQTKFLLSADNSPSKMMGGASSADDSRSGHFNVSLINTTPKTQYFSRMPQACPICGQQYNNYNNVLRHMESKHPDQLPQTYKCVKCGQGYPRLSNLREHMVSAHGADKARHTGFEYIVNADAVKAAAGSTAAAPQNPYTGRYDYVMKDLMSITNGGTVDEDCESENASKKMRLEPNIALNNNNGSVTNASPRECSICNAVFANNIGLSNHMRSHQSAQNNNFGISSSKTVAGGNAAVQSSVGGQQQILRKSLEQAADRRFRRMRCRICQRRFSSKKSYRYHMLNDHQIRNVQFIKCKLCDAEFAYEKGLKVHMFKIHNTLLKDDMIIKQYECEICSIVYRTDVELQHHLANVHNKQGGSSNINEDDDAYNADESMAAGLVDNSSVGADLSGISTPVSNVGLGDTQAGPLYWYQCKYCPSNFNTNKKLAIHINSHDEFDSNDYSCKDCGNVYSGRKSLWVHRYKKHPQIPEPSECVMCKKVFFDAQMLEHHIPSCNRKPITQTASETATAVYKHKTGDDEDDEDDEQSRDGENTLSNTINATVGSASNLKIKLPEVACTICGARFTDQDLFAKHIQMHEMELYTDNPLAAMFDTGPADPNQFYMDRINDNGEYACDLCAKTFTQMTALKVHRKWHFRGDSKQNEADQHMSSNSNVQLQQQQLNRNQQLQQQAQHQQQSNKSKMPINPQHLLGLQAVGLMPRQFANMGGANHRPQKRKRELKCQYCPSTFISNNNLRRHLYELHKNEMGHLPEPPRIECDPANMCGRCNIKFETKAEWIEHKVAEARVMRPYGPFQWGCDLCGAYVSRKEKLINHLHNHMKEPVIVPVEHPESNKQQQQQQSQQVAAQTAVQTQSQNPTQQPVEEGSDVMPEFKKIKIPSLPRKPDEEESRDSVKDQYDEDDEDDEDEEGEQEQEADVDNNNEVEKQQSQSQQQQQQQRRPAVEEFDEDEEEEEEEPVEGEEFDDLAVGAQQTVGGDDEVDEDDEDDDDDEDDDDDDSSDADDEDPSTNEDTNEASSLKGGVNKPPELPQPRSYNDTEVEGEEDDSDEFDDDEDDNSSTENRKPPASSVVNSNVVVKSRYSCDLCQVYFDSQQELQKHVKMHFLNGPGSVTLTEIKSSKSSSNKSRSSSSDVLAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -