Basic Information

Insect: Lucilia sericata
Gene Symbol: -
Assembly: GCA_015586225.1
Location: NW:15094-17768[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.6e-06 0.00021 21.2 2.9 1 23 9 32 9 32 0.96

2 14 7.9e-07 3.7e-05 23.6 2.0 1 23 38 61 38 61 0.97

3 14 0.74 34 4.9 0.1 8 20 79 91 78 93 0.87

4 14 2.4e-05 0.0011 19.0 2.4 2 23 185 206 184 206 0.96

5 14 0.004 0.19 12.0 2.0 1 21 212 232 212 234 0.89

6 14 0.0034 0.16 12.2 0.5 1 21 247 267 247 268 0.94

7 14 1.1e-05 0.00052 20.0 3.6 1 20 277 296 277 297 0.95

8 14 0.0038 0.18 12.0 0.2 1 23 321 343 321 343 0.97

9 14 6.3e-05 0.0029 17.7 1.2 1 23 349 371 349 371 0.98

10 14 0.00046 0.021 14.9 7.1 1 23 377 399 377 399 0.99

11 14 1.2e-05 0.00057 19.9 4.2 1 23 456 479 456 479 0.95

12 14 0.00076 0.035 14.3 3.3 1 23 485 507 485 507 0.98

13 14 7.9e-05 0.0037 17.3 1.4 1 23 514 536 514 536 0.98

14 14 0.01 0.47 10.7 8.1 1 23 542 565 542 565 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.6e-06	0.00021	21.2	2.9	1	23	9	32	9	32	0.96
2	14	7.9e-07	3.7e-05	23.6	2.0	1	23	38	61	38	61	0.97
3	14	0.74	34	4.9	0.1	8	20	79	91	78	93	0.87
4	14	2.4e-05	0.0011	19.0	2.4	2	23	185	206	184	206	0.96
5	14	0.004	0.19	12.0	2.0	1	21	212	232	212	234	0.89
6	14	0.0034	0.16	12.2	0.5	1	21	247	267	247	268	0.94
7	14	1.1e-05	0.00052	20.0	3.6	1	20	277	296	277	297	0.95
8	14	0.0038	0.18	12.0	0.2	1	23	321	343	321	343	0.97
9	14	6.3e-05	0.0029	17.7	1.2	1	23	349	371	349	371	0.98
10	14	0.00046	0.021	14.9	7.1	1	23	377	399	377	399	0.99
11	14	1.2e-05	0.00057	19.9	4.2	1	23	456	479	456	479	0.95
12	14	0.00076	0.035	14.3	3.3	1	23	485	507	485	507	0.98
13	14	7.9e-05	0.0037	17.3	1.4	1	23	514	536	514	536	0.98
14	14	0.01	0.47	10.7	8.1	1	23	542	565	542	565	0.91

Sequence Information

Coding Sequence: ATGGAAAGTGCAATATCACCATCCTTTAACTGTGAATTGTGTCACAaaaattttgtccaaaaatcTTCTCTCAATCGCCACGTTAGGGAGCAACATTTACAACCAGGCTTATACCAGTGCAAACAATGTGGTTTAAGattttccaaaaaatacaaTCTGCAAATGCATATTAAAAACattcacacaaaaactttgcaaaaaactaataaatactttaaaagtTCAGATGGCAAACGAGAATTTACAAATTTGTCTAATTTAAAAGCTCACAACAAAGAGTCATATAATAATATTGAATTAATTAAATCTTCCAATCCTCAAGAGGAAGATGTACTAGAACCAGATGCTCAAACGTTGGCAGCAACTGTTTTAAAGGAATTGAAAGAATTACAAAAAGATATACAACCAATAGAAGCGGCAGAAGAGAATTTAACAACTGCCACAGACTTTGGAATAAGGAACATTGTTGTTAAAGATAATTTATATCCCTCAGGAcagtttaaacaattaaaagtaCAAAGTATTAAACGTTTCGATggattttcctatttaatttgtGAATTCTGtaaaaaggaatttaaaaaattatataatttcttaAGACATCTCAGAACTCACACCAAAATACGACCTTTTATTTGCGTTTTATGTAAGAAATCATTTCCCACTACCGCTCAGTTAAAAACACATTGTTCCATTCATCGTTTACATGAAAGTTTTGGATTAATAAGGAAATTTTATCAATGCCCCAAGTGTAAAGAAGGTTTTAGTGCCAGACAACAATTCGATAAACATTTAAGctcctctTTAACCTGTAGCCAGTTAACATTCAAATGTCCACACTGTGGTAAAACctttaaaactttgaaaactttaataaaCCATAAACATGGCGAAAAGGATAATGAAATAGATTTACTCAAGAAAATATTACCCATCCCTGAGCCGGTCTCGGGGGAATATGACTGCAATTTGTGTGGTTTAACGTTAAGTAGTCAAATTGTCttaaaacaacatgaaaacaGACATGCAAATCTATTTAAACATCAATGCTTGGAATGCCAACAAACATATGCCACGCAAGCGGCTTTAAGGATACACACTAAAACTCATTTAAAGTATACAAGTTTCAAATGTCTTTATTGTagcaaaacatttaaaacaaaacaaaattgccGCCAACATATGATAACACatttgaaaatgttaataaacaCTAAGGAGCAAAAGGAAAACTTGTTAAAATATCCCATATTTATAGGAAATGAACAAACACAAAACGAACAAatgtgtataataaaaaaacagaaatcaaagatttcacaaataGAGCCAAAACTTTTTAACGCAAAGGTAGAATTCAAATATAAATGTTCCAAATGTGATAAGACATTTCGTTATAATGCCTGGTTGAAAAAACATTTCAACTATAAACACTCTAAGGAAAAGCCCTATGAATGCGAAACTTGTAGGCACAAGTTTCGTTCAAAACAATCTTTAGACAACCATCAGTTGGTGCATGCAACACAGCGCGTCAAACATACTTGCCAAGTGTGTGGTCGTCTATATGCCTCTAATAAATCTCTAAAATTGCATTTGAGAATTCATACACAAGAAAAACCcttcaaatgtaataaatgtTCCAAACAGTTTCGTACTTCTGGTCATTTTATACAACATTGTAAATCAAATCACAAGGAATAA
Protein Sequence: MESAISPSFNCELCHKNFVQKSSLNRHVREQHLQPGLYQCKQCGLRFSKKYNLQMHIKNIHTKTLQKTNKYFKSSDGKREFTNLSNLKAHNKESYNNIELIKSSNPQEEDVLEPDAQTLAATVLKELKELQKDIQPIEAAEENLTTATDFGIRNIVVKDNLYPSGQFKQLKVQSIKRFDGFSYLICEFCKKEFKKLYNFLRHLRTHTKIRPFICVLCKKSFPTTAQLKTHCSIHRLHESFGLIRKFYQCPKCKEGFSARQQFDKHLSSSLTCSQLTFKCPHCGKTFKTLKTLINHKHGEKDNEIDLLKKILPIPEPVSGEYDCNLCGLTLSSQIVLKQHENRHANLFKHQCLECQQTYATQAALRIHTKTHLKYTSFKCLYCSKTFKTKQNCRQHMITHLKMLINTKEQKENLLKYPIFIGNEQTQNEQMCIIKKQKSKISQIEPKLFNAKVEFKYKCSKCDKTFRYNAWLKKHFNYKHSKEKPYECETCRHKFRSKQSLDNHQLVHATQRVKHTCQVCGRLYASNKSLKLHLRIHTQEKPFKCNKCSKQFRTSGHFIQHCKSNHKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00921562;
90% Identity: -
80% Identity: -