Lser004957.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- -
- Assembly
- GCA_015586225.1
- Location
- NW:172629-181233[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.031 1.5 9.2 4.7 1 23 249 272 249 272 0.95 2 21 0.81 38 4.7 2.3 1 23 278 301 278 301 0.95 3 21 0.00025 0.012 15.8 0.5 1 23 311 334 311 334 0.96 4 21 0.00067 0.031 14.4 2.0 2 23 368 389 367 389 0.96 5 21 0.0049 0.23 11.7 1.1 2 23 500 521 499 521 0.97 6 21 0.0036 0.17 12.1 0.3 2 20 568 586 567 589 0.94 7 21 0.00038 0.018 15.2 0.4 1 23 661 684 661 684 0.95 8 21 0.0005 0.024 14.8 1.4 1 22 691 712 691 712 0.95 9 21 0.071 3.3 8.0 0.8 2 23 724 746 723 746 0.95 10 21 0.05 2.3 8.5 3.9 1 23 762 784 762 785 0.93 11 21 0.39 18 5.7 0.1 2 19 811 828 810 830 0.93 12 21 4.9e-06 0.00023 21.1 5.5 1 23 882 905 882 905 0.98 13 21 0.0028 0.13 12.5 0.9 1 23 942 965 942 965 0.97 14 21 9.3e-06 0.00043 20.3 0.2 1 23 996 1018 996 1018 0.98 15 21 7.4e-05 0.0035 17.4 2.9 1 23 1024 1046 1024 1046 0.99 16 21 0.0073 0.34 11.2 0.1 1 23 1052 1076 1052 1076 0.98 17 21 0.00099 0.046 13.9 0.0 2 23 1090 1111 1089 1111 0.97 18 21 4e-07 1.9e-05 24.6 1.8 1 23 1117 1139 1117 1139 0.99 19 21 0.00036 0.017 15.3 3.3 1 23 1145 1167 1145 1167 0.96 20 21 0.0012 0.057 13.6 5.1 3 23 1175 1195 1173 1195 0.96 21 21 0.49 23 5.4 1.8 1 20 1201 1220 1201 1225 0.89
Sequence Information
- Coding Sequence
- ATGTCTAACGTGATTAAAAGTGAATGTTTTATAAATGGTATACAATATAAGTGTCGTACTTGTTTCGATCCAGGACAAATTATCTACTCCCTTAGGGATGAAGCCAACAACGCGAAAACTTGGCGTGAATTGTTAAAGGATATTGCTCCGCCACAgCCATATGACGAGAATTTACTTCCAAATACAATGTGCTGTTTATGCTCGGAAAAACTTCAAACCACCTACGATTTCATACGTCAGATTCAAAATGTAAATgagaaatattcaaaattattggAAGGTTGTAATGGACTTTATAACTCTACTGATTGTTTGGAAGAATCAACAATTGATATGCCAATGAAAGAGCTTTTGCCGGAAATTAAACTAGAGGAAGAATTAAATCCTTATGATGTCGTTTTAACTAGCACCGACCAGTTAGATGAAGTACCAGCAACTATATTTAAAAACGAAgacactgatgatgatgatgatgatcccTTTACGGAAACTTACAATGATGATGCCGCATCAACATCTGACTTATTGGAAACAAGaatCTTAAGTGAACATTTTGAAGATTACCAAAATGACTATGATTACGCAAATGTGTCCagcAACGTGTCATTTAGTGAAAGTAATTACAATCCTTTGAACGAGATGGAGAAAAACAGCAGTGATAATGATGAAAGACATCAAGAGAGCGAAGAAACCACAATAAAAAAGTTCTTAGATAATGATAAAATCGAAATTATCAACCATGGCTTCCTATGTCGCATATGTCAGAAAACATTTACCTTACTGAGAAATTGTCGAAGACATATAAAAACTCTACATCCTCAGCAGATCTTTTACATTTGCTCATTTTGTGGACAGAATTTAAAGTGtgaagacaaattaaaaaagcACATTGTGCGTTCACATTCTGGCGATAATTATAAAATGACATATTTTCCTTGCAAATTATGTGGACAATATTACATGAGTGAAGACAATTTACAAAAGCATATTACACGCTTACACTCTGTCAAACGTATTAAATCGACCTGGTCAACTATTAAAAATGTAGAACACATATTTGCCAAACGTTTATACAGCAAGCCGACCGCTAGACTTCATGTGGAATGTAAATTGTGTTCTGAAACATTTCAAACAAGTAAAGATCTACGCCACCACTTGGAGAGCCACAGCGTTATAGACACTCTCCAAGATTTGGAATTAAGCGATAGTATTGTCCAACATTTCTTTCCAAATATGAATGATTTAAACGTCGTTAAACAAACAATATGTAATGATATTCGTAAGAAAGATTGGTTTAAATATTACACAGTGCTAAATGaacatttttatgaaatgtCCCTAAGTGACACTGAGGTAGAGGATCTAGAAGGAGAAGAACAAATTGCAGAACGAGCCGGTAAATACAAGTGTTCTATGTGTGCTTTATGCGACTTTTCGTATAAATACGAAGTATTCCAgcatttaaaaaactttcattacaagaatgaaattgctttaaaatgtgACAAGTGTAATTTGCCATTCATATCCATCAAAATGTTTACACAACACACACAAACTCATTGCCATAACAAATATAAAGATTTACTCTGTGCTCGTTGTCCAGCCAAATTTGTTTGgccagaaaacataaaaaatcacAACTGCTGTGTCAACAGCAATAAGAAGCTGCCTGTTCATAGATTTACAAAACCTATAATACGTTGTGGTCTTTGTCCTGAATCCTTTAAGAAACTTCCACATTTACGCGAACACATGCCATTACATGCCGATGGTAAAACTGGTATTGATTtcgaaaactgtatttatgtaAGAAATTTCTACCCATCGATAACAATTGATAAAGCATTACTGGAACAAGAGATACAAAATGCCTATACTAAAtctcaaattagttgtttttatCAAGTCATAGATAAGTATGGCAATGAACTAGACATGTCCGATTCAGATTCAGATACTAATACGGAAGGAAAGGAATACGTGTGTGAACTCTGCAAAGAAATGTTCGAAAGACGACAGCTTTTATTAAAACATCAACTAGAACTACACAATGATCTGACGCTACCTTTTGTGTGTAAGGACTGCAAACAGCAATTTGTTAGTCATGATTTATTGCAACAACATTTAAAAAGGGTTTGTTGGAATGAACACCGACGCATAGCTCAACAATGTGAGCATTGTAATAATCGTTTTATATGGCCAAATAATCTGCAGATACATAGAGAAATACAGCATTCTATGGTCCAGGTTATCAAACAACATTCTGACGCAAATGAACTTCATTATTGTCTCTTGTGTCCTCAAACATTCAAGAGTATTGATGACCTGCACGATCACTTGAGTGACCATCATTTAACACCCGTTGATGTCAAGACAGCTGAAAGTATATTACATTCCACGTGGTGGCCAAACGGTGAAAAAAGAATAATGTGTAAGAAATGTGGGCTGTTATTTCCCTCTATGGTGAGTTTAAGAGAGCATTTTTCGCCCAATAATCCCAATAATTTATGTGGGAATCAACATCTATTGGCAAATTATTCAATTACCAATCAAAAAGGATTCGAGTTGCACCTGAACCTGGATTCCGAAACAGACGAAGAAGATGATTTGGAGGTAACACATAGAAAAATGCCACCACCCTATAAATGTAGCATTTGCAGTATGTCGTTTAAGCGAAAGCATCAACTGACCCAACATCAGCGATCCACGCACAATTATGAATCGCTGGAGCTAAAATGCGATCGTTGTATATTTAGAACTGCCTCAAAGaaaatcttaGATTATCATAAAGTCATGCAgtgttttaatattgaaaaacaatataaatgtaaCCAGTGTAACTTTAAATTTATGTGGCAAGAGAATCTTGAGAATCATATAAAATTGATTCACACATCCAACAATGTGGCCAAAACAATCGTCGGCCAGTCAGAGTCGGTAACTAACAATGATTTACAATCAACGTCGCACGACAATAAATCTTTCCAGTGTGATCAATGCGAAATGGTCTTTGCACGAAATTCCGACTTACAAGAACATCTGCAATTGCACAGTGCCGAACATCCGTACAAATGTACATTTTGCAAAGAATCATTTAAGCATAGagaagttttaattattcacaTCAGAAGTCACGCAGTCCAGCGTCGTTACCAGTGCGAATTTGAGGATTGTACGGAAGAATTTCCGAGCTCGCTCGATTTAGAACTACATACGCAAATTCATACGAGAGATAAACCCACACCAAGTGCAAATGGAAAATGGAAATGTCCCTACTGTGGTATTTTCTTAGCGTCGAATGGAGGTCTTACAATACACGTAAGACTTCACACCGGAGAAAGACCCTACAAGTGCGATTTTTGTGAAAAGGGCTTTACTCGTAGAAGTGATTTAACTGAACATATACGCAAACACACTGACGAACGTCCCTACAAATGCACGCATTGTGATAAAGCCTTTTCAAAGAGGCAACGTTTAAATGAACACAACCTCGTTCATACGGGCGAACGTCCTCACCTGTGTCCGTTTTGTAAGAAATCCTTTCGAAAGCGGAACTATTACAATTTACATTTACGTATGCATACAGGCGTTAAACCGCACAAGTGTGGAGTTTGTGATCAAGCTTTTACATGTGGAGCATATCTGAAGAAACACCGTATCGCAAAGGGACATTAtttagaaagtaaaaaataa
- Protein Sequence
- MSNVIKSECFINGIQYKCRTCFDPGQIIYSLRDEANNAKTWRELLKDIAPPQPYDENLLPNTMCCLCSEKLQTTYDFIRQIQNVNEKYSKLLEGCNGLYNSTDCLEESTIDMPMKELLPEIKLEEELNPYDVVLTSTDQLDEVPATIFKNEDTDDDDDDPFTETYNDDAASTSDLLETRILSEHFEDYQNDYDYANVSSNVSFSESNYNPLNEMEKNSSDNDERHQESEETTIKKFLDNDKIEIINHGFLCRICQKTFTLLRNCRRHIKTLHPQQIFYICSFCGQNLKCEDKLKKHIVRSHSGDNYKMTYFPCKLCGQYYMSEDNLQKHITRLHSVKRIKSTWSTIKNVEHIFAKRLYSKPTARLHVECKLCSETFQTSKDLRHHLESHSVIDTLQDLELSDSIVQHFFPNMNDLNVVKQTICNDIRKKDWFKYYTVLNEHFYEMSLSDTEVEDLEGEEQIAERAGKYKCSMCALCDFSYKYEVFQHLKNFHYKNEIALKCDKCNLPFISIKMFTQHTQTHCHNKYKDLLCARCPAKFVWPENIKNHNCCVNSNKKLPVHRFTKPIIRCGLCPESFKKLPHLREHMPLHADGKTGIDFENCIYVRNFYPSITIDKALLEQEIQNAYTKSQISCFYQVIDKYGNELDMSDSDSDTNTEGKEYVCELCKEMFERRQLLLKHQLELHNDLTLPFVCKDCKQQFVSHDLLQQHLKRVCWNEHRRIAQQCEHCNNRFIWPNNLQIHREIQHSMVQVIKQHSDANELHYCLLCPQTFKSIDDLHDHLSDHHLTPVDVKTAESILHSTWWPNGEKRIMCKKCGLLFPSMVSLREHFSPNNPNNLCGNQHLLANYSITNQKGFELHLNLDSETDEEDDLEVTHRKMPPPYKCSICSMSFKRKHQLTQHQRSTHNYESLELKCDRCIFRTASKKILDYHKVMQCFNIEKQYKCNQCNFKFMWQENLENHIKLIHTSNNVAKTIVGQSESVTNNDLQSTSHDNKSFQCDQCEMVFARNSDLQEHLQLHSAEHPYKCTFCKESFKHREVLIIHIRSHAVQRRYQCEFEDCTEEFPSSLDLELHTQIHTRDKPTPSANGKWKCPYCGIFLASNGGLTIHVRLHTGERPYKCDFCEKGFTRRSDLTEHIRKHTDERPYKCTHCDKAFSKRQRLNEHNLVHTGERPHLCPFCKKSFRKRNYYNLHLRMHTGVKPHKCGVCDQAFTCGAYLKKHRIAKGHYLESKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -