Lser012661.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- ZFX
- Assembly
- GCA_015586225.1
- Location
- NW:98382-101617[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00034 0.016 15.3 3.0 2 23 107 129 106 129 0.94 2 17 0.47 22 5.5 8.2 1 23 135 158 135 158 0.97 3 17 7.7e-05 0.0036 17.4 1.7 2 23 166 187 165 187 0.97 4 17 0.018 0.83 9.9 2.2 2 19 226 243 225 248 0.90 5 17 0.0013 0.061 13.5 2.5 1 23 254 277 254 277 0.98 6 17 2.9e-05 0.0013 18.7 1.5 3 23 286 306 284 306 0.97 7 17 2.3e-05 0.0011 19.0 3.7 1 23 312 334 312 334 0.98 8 17 0.00019 0.009 16.1 0.5 2 23 438 460 437 460 0.91 9 17 0.065 3 8.2 3.7 1 23 466 489 466 489 0.97 10 17 8.2e-05 0.0038 17.3 4.1 2 23 497 518 496 518 0.97 11 17 0.012 0.58 10.4 0.2 1 23 725 749 725 749 0.92 12 17 2.2e-06 0.0001 22.2 1.3 3 23 756 776 755 776 0.98 13 17 3.8e-05 0.0018 18.3 2.2 1 23 782 805 782 805 0.96 14 17 0.00039 0.018 15.1 0.5 1 23 814 836 814 836 0.97 15 17 1.5e-05 0.0007 19.6 1.4 1 23 843 865 843 865 0.98 16 17 1.8e-05 0.00083 19.4 0.5 2 23 872 893 871 893 0.96 17 17 3.1e-05 0.0014 18.6 7.5 1 23 899 921 899 921 0.95
Sequence Information
- Coding Sequence
- atggcacacaaattaaaatcgaataaaattaatacagccgctaaaaataaacaaaataataaacgtaGTGGACATAATGAAGTTAATAAGGAAACTATAACGGCTTTAGAATTTAAGCAAGAATTAACAGACGATAATAGTAATGGAAAAGAGACAGACTTTCTGGTAAATGCTGAGAATTCCCTGGATGAAGATGAAATTTATGGGGATAGTAACGACATGTTTAATGGGCATAACAAAGATAGTGGAAAAACTACTACGGAAACAACTTATTATAACAACAGAGGTTATACACGTAAAGTATTTCCAATAGAAAGTAAATGTAACGTTTGTTCTAAGCATTTTTCACAACAAAGGGATTTGGTCAAGCATGCCCAACAATTTCATCCTAATGATAAAGCCTTTAAATGTCGTCACTGTCCAACATTATTCTCAAAATTAAAATCTCTATCTACCCATTTTAAAAGATGTCATGCCAACTTAGCCAATACCATTTCTTGTGAGTATTGTTACAAGTCATTTTTTGCCCAGTTTCAGTTGGAACGTCACCGACGAACACATACTGAATATAATAATGATTTGCAAACTAGTAAAGATAATAGTAACAGTAATATTGTGGGAGCAGATGATGATATCTATGAAAATCGTAAGGGAAAAATTTATCCCATACAAAAGAAATGTGCTATTTGTAATAAGACATTTTCACTTCAAAAAATGCTTGTGCAGCATTGTCAACAAGCTCATCCCAATgagaaaacatttaaatgtcTATATTGTCCCACGgtattttcaaaacttaagtCGGTGACAACGCATTACAAAAGAAGTCATTCCAAAACAACAAagaccattttttgtgagtattGTAACATGTCATTTTTCACCAAGTTCCTTTTGGAGCGTCACTTGCGCTCACATACCGAGCAACGACCATTTCATTGTGATCTGTGTGATAAatcatacaaatataaaaggAATTTGGATGTACACCTAAGAACTCACTCGAATAATGTGAATTCTTTAAATAATCCTTTAGATGAGTATTGTGAGAATgacgaagaagaagaagagaatattTTAACAGAGGAAGATGATTATGGTAATGTTGAGGAAGAATTAATGGATGATGAATCTCATGAAAAAGAAACAGACTTTCTGGTAAATGCTGATTATTCCGTGGATGAAGATGAAATTTATGACGATAGTAATGACTTGCTGATTGAGCATGATAAAGATAATGGTAGTAGAActatttcaacaaaatattcTAATAGCAGAGAATATTCACGTAAAGTTTatcctatagaaaataaatgCTACGTTTGCCCCAAGgatttttcacaacaaaaagACCTAATCCGACATGCAGAACAATTTCATCCTAACGATAAAGCCTTTAAATGTCGTCAATGTCCCACATTATTCTCTAAATTAAAATCTCTATCCTCACACTTTAAAAGACGTCATGCACATTTGGCCAAAACCATATCTTGTGAATTTTGTAACAAGACCTTTTTTGTCCAGTTTCACTTGGAACGTCATCGAAGAACACATAGTGAATATAACAATGAGTTGAGTTCTATGCATACTGATAACAACGATGATAACTGTGAAAATGAAGAAGGAGATAATATTTTAACAGGCGACGATGAGTATTATGAGAATGATGAAGATGATAAATATGAGTATTATAAGAATAATGAACATAGTATGTTTGCAGAGGATGAGTATTACGAAAACGATGAAGAAACTGAGGAAAATGACAATGAGCAGGAAGGCaacaattttcataataaaagacAATACCAACATAAAGATAATAAGAACAATCAAAAAACTCATCAGAAAAATAATGAACCACCCACGGAGATTATTACTATCGATGATGATGATCACGCTGCCACAGTAATGGAATATGATAATAGCAGCAACCTTCATAATAACACCTATTTCATTATAGATGAATTTAATACCGATAATGAGCAGGATGAAGAATTTACAGCAGCAGATTACTGTAATACAGATAATGGCGACGAAGACTATGCTGCTGGAGACATAGTTTCAGTTTCAGCCGAGACTGATCAACACGAGTGTGCAGTttgtatgaaattatttaaatgtcaGCAAGCAGTAGCCAGGCATTTACATCGTCATCATCctgaaattgaattttttaaatgtccCTACTGTGATGACAACTTTTATGGCTTAGACTTGTTAGCTGAGCATATCAAAGTAAAGAAACATATACAAAAACCAAATATCTGCAAATactgtcttaagtcttttgatcGCAAGACCGATTTGAATCGTCACATACGTATACACACTGATGAACGTCCGTATTCTTGCAATGTATGTGATACAGCCTTTAAACAAGTGAATCATTTAAAACGTCACAGAGAATCAATGCACAGCATTTTATTTCAAccacaaaaatttaattgtgaACTTTGTACGAAAAGTTTTACTGAAGCCGAGATACTAAAACGTCACATGAGTATACATGAAAACAAGCTAAGTTCTTATCCCTGTACCATGTGCagtaaaatattcaaaactCGTTACGATTGGCAGAGGCATGAACAAACACATAGTTCAAGGATGGATTTAATATGTGAATATTGTTTGAAATCTTTTGATAGCAACGAAACACTCAATCGGCACCTGAAGGTACATAAGGGCGAATTCAAGTTTTTATGTACtatttgtaaaaaaactttCCGAAGAAAAAGTCATTTAGTAAATCATCATAAGAGCcatagaaattcttaa
- Protein Sequence
- MAHKLKSNKINTAAKNKQNNKRSGHNEVNKETITALEFKQELTDDNSNGKETDFLVNAENSLDEDEIYGDSNDMFNGHNKDSGKTTTETTYYNNRGYTRKVFPIESKCNVCSKHFSQQRDLVKHAQQFHPNDKAFKCRHCPTLFSKLKSLSTHFKRCHANLANTISCEYCYKSFFAQFQLERHRRTHTEYNNDLQTSKDNSNSNIVGADDDIYENRKGKIYPIQKKCAICNKTFSLQKMLVQHCQQAHPNEKTFKCLYCPTVFSKLKSVTTHYKRSHSKTTKTIFCEYCNMSFFTKFLLERHLRSHTEQRPFHCDLCDKSYKYKRNLDVHLRTHSNNVNSLNNPLDEYCENDEEEEENILTEEDDYGNVEEELMDDESHEKETDFLVNADYSVDEDEIYDDSNDLLIEHDKDNGSRTISTKYSNSREYSRKVYPIENKCYVCPKDFSQQKDLIRHAEQFHPNDKAFKCRQCPTLFSKLKSLSSHFKRRHAHLAKTISCEFCNKTFFVQFHLERHRRTHSEYNNELSSMHTDNNDDNCENEEGDNILTGDDEYYENDEDDKYEYYKNNEHSMFAEDEYYENDEETEENDNEQEGNNFHNKRQYQHKDNKNNQKTHQKNNEPPTEIITIDDDDHAATVMEYDNSSNLHNNTYFIIDEFNTDNEQDEEFTAADYCNTDNGDEDYAAGDIVSVSAETDQHECAVCMKLFKCQQAVARHLHRHHPEIEFFKCPYCDDNFYGLDLLAEHIKVKKHIQKPNICKYCLKSFDRKTDLNRHIRIHTDERPYSCNVCDTAFKQVNHLKRHRESMHSILFQPQKFNCELCTKSFTEAEILKRHMSIHENKLSSYPCTMCSKIFKTRYDWQRHEQTHSSRMDLICEYCLKSFDSNETLNRHLKVHKGEFKFLCTICKKTFRRKSHLVNHHKSHRNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -