Lser002094.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- -
- Assembly
- GCA_015586225.1
- Location
- NW:107596-110609[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1 49 4.4 0.0 1 11 198 208 198 221 0.84 2 17 2.6e-06 0.00012 22.0 3.4 1 23 224 246 224 246 0.98 3 17 0.028 1.3 9.3 0.4 2 23 254 277 253 277 0.94 4 17 0.15 6.9 7.0 0.2 1 23 283 307 283 307 0.93 5 17 0.0033 0.16 12.2 2.8 1 23 311 333 311 333 0.98 6 17 5.7e-05 0.0027 17.8 2.5 1 23 339 361 339 361 0.98 7 17 0.0027 0.13 12.5 0.8 1 23 367 389 367 389 0.96 8 17 0.00035 0.016 15.3 3.2 2 23 396 418 395 418 0.95 9 17 2.7e-06 0.00012 22.0 0.2 1 23 488 512 488 512 0.97 10 17 0.00053 0.025 14.7 0.1 1 23 518 542 518 542 0.96 11 17 0.018 0.85 9.9 0.1 2 23 547 568 547 568 0.97 12 17 4.1e-05 0.0019 18.2 0.4 1 23 574 596 574 596 0.98 13 17 0.001 0.048 13.8 2.9 1 23 602 624 602 624 0.98 14 17 0.00068 0.032 14.4 3.3 1 21 630 650 630 653 0.96 15 17 8e-06 0.00037 20.5 1.8 1 23 690 713 690 713 0.97 16 17 0.033 1.5 9.1 2.7 1 23 732 751 732 751 0.86 17 17 0.001 0.048 13.8 0.8 1 23 757 780 757 780 0.96
Sequence Information
- Coding Sequence
- atgttaaAAGTTGAATCTCCTGGTTTCAACTTAATACCACCATTACATGGAAAATGTGGCGAAATATATTGGAACAACTTTAAAGATTTCGCAATTTATTGTTGCTTTTGtaatttacaattatttgcCTTCGAAGATTTCCGTGGACATATTTTGGATGTACATTTAGAAAATTGTACTTTAAAAGAACAAGTAGATATTGATGATAATCCCATTGCGGGGGAAGTGGAACTAAAGCAAGAACATTTAACGGCCGGTGAAAATGAAGAATTTGAAGCTCCTACAGAAAACTGGAACGAGGAGCAGGTGGCAACAGCAAGTGAGTCGTCCGATGACAGTGAAGATGATTTCCAAGATTCTAATAGTAGTTTTGAGGATAGCAGCACTGATCGTTCCTTGCTAAAGGTTTTACATATCAAAACGGATGTTAGGGAACGAAAGAAAATGAGAAGGCTTAAAACTAAAACTCTAAATAGTAGAAAGGAATGCGCAGAGACATTGGAAGCGtTTAATAAAACTACGTCTAAAGATGAATCAAATGCAGAAGAAAATTCTGGCGATGAACCAGAGACGAGACGACGAGCTAAACAATATAACTGTCCTGAATGTTCTgagatattttcaattaaaaaaattttggatgGACATGTTCTAGCTATGCATAAGGGTTACAAATGCTCCCTCTGTGACAAACGTTACTCACGACAATCACAGCttaaaattcactttaaatCTCATAGTGaggaaaaaccaaaaattccCTGTCCCAACATCGATTGCACACGAATATTTAGCTGCATAGATAATCTAAAACGTCATCTTGAGTTGCATACAAtgccagcaacttttgtatgtGCTGAGGAAAATTGCCGGAAAGCATTCCCCACCGAACAACGTCTATTAGCACACtctaaaaaccataaaaaacatTATATTTGTGATATTTGTGCTTATAGTTGTTGTTCCAATGCCACATTGATCATACACAAACGTAGACACACGGGCGAGAAACCGTTTTCCTGCGACATatgtaaaaaacattttatatcaaAGTCAGCCTTAGGAGAACATATGCATGTTCATCGTAGAACGGGTAATCATGTTTGTAGGATTTGTAGTGCTTCGTTTGTTAATGATAGATATTTGTATCGTCATATGGTCATACATAATTCAAAACGTACTACGAAATGTTCATTATGTGATAAAGTTTTTCCGACCTCCAAAGGATTAAGTAATCATAGGAAATATTGCCATATAAGAGACAAAGTTCAGTTAAACAAATTAGCTGAAAAGAAGGAAAAATGTAATGCAATTGAATTAGGCAGTGAAGGGGTTCGAGTCAATGTGTTAAATCAAAACATATCTAAAGATGACAATTCCAGTAAAAGTTCTTGCCACGATACCCAGAAAAATTCGCACGAAGACCAACAACAACCCAGTGATAACAATGAAATACTAATATTTCCTTGTCCTAGAACAGAATGTGGTAGAACTTTTGCaagtgaaaaaaatcttaatcgaCACCTGGAAGTACATACCATGCAAGCTTCATTTATAtgtaatattgaaaattgtggTAAAGCTTTCCCCACCGAAGCACGACTAAAGTTACACGCACGAGTACATAATAAACGTAATGTATGTGATATTTGTGGCTATCGGTGTGCTGCTCTAGCAACTTTAGTGATACACAAGCGGGTACACACGGGAGAAAGACCTTTTTCGTGTATGACTTGCGAAAAAACGTTCATATCAAATACTGCCCTACTAGAACATATGAACGTACATGCCACCGCACGTTCTCATGTATGTGAAATATGCCAATCTGGTTTTACTAGTTTCAAGGCATTGCGTCGACATAAAAAGACCCATACCAACGAAAGAAACTATAAATGTAGATTGTGCGATAAGGCATTTAAGACCTACAACGGTTTGGACAATCATATGCGATGTATGCATCGAGAACCTAAAGCCACAAATGAAATACAAACCGATATACTTATTGCGGATAATTTTGTGGAATATGCTTTGAAAAAAATCGATCCATCATCaaataagataaaaaaatacaaatgcgaagaatgtaataaaacttttaaacggCTCAATGGTTTGGATAATCATTTAAGGCAATTTCATGGTGCCACTGATTCTTCAATAGTTGAGAGTTTGGAAAACTCTgataaaaagaaattcaaatgtaatttgtgtaataaaatgtttacctCTTTGAAACGCCACAATTTAACGCATAAGAATGATAGAAAATTTGAATGTAAATTATGTGATAACATTTTCAAAACCTTTAACGGTTTGAACAGTCATATGGTACGTATGCATGGAGATGCTAATAATCTGACGGTCGATAAAGAATTAAACAATGCAGAGAGTTCGGTAGTCGAGAAACTTTAA
- Protein Sequence
- MLKVESPGFNLIPPLHGKCGEIYWNNFKDFAIYCCFCNLQLFAFEDFRGHILDVHLENCTLKEQVDIDDNPIAGEVELKQEHLTAGENEEFEAPTENWNEEQVATASESSDDSEDDFQDSNSSFEDSSTDRSLLKVLHIKTDVRERKKMRRLKTKTLNSRKECAETLEAFNKTTSKDESNAEENSGDEPETRRRAKQYNCPECSEIFSIKKILDGHVLAMHKGYKCSLCDKRYSRQSQLKIHFKSHSEEKPKIPCPNIDCTRIFSCIDNLKRHLELHTMPATFVCAEENCRKAFPTEQRLLAHSKNHKKHYICDICAYSCCSNATLIIHKRRHTGEKPFSCDICKKHFISKSALGEHMHVHRRTGNHVCRICSASFVNDRYLYRHMVIHNSKRTTKCSLCDKVFPTSKGLSNHRKYCHIRDKVQLNKLAEKKEKCNAIELGSEGVRVNVLNQNISKDDNSSKSSCHDTQKNSHEDQQQPSDNNEILIFPCPRTECGRTFASEKNLNRHLEVHTMQASFICNIENCGKAFPTEARLKLHARVHNKRNVCDICGYRCAALATLVIHKRVHTGERPFSCMTCEKTFISNTALLEHMNVHATARSHVCEICQSGFTSFKALRRHKKTHTNERNYKCRLCDKAFKTYNGLDNHMRCMHREPKATNEIQTDILIADNFVEYALKKIDPSSNKIKKYKCEECNKTFKRLNGLDNHLRQFHGATDSSIVESLENSDKKKFKCNLCNKMFTSLKRHNLTHKNDRKFECKLCDNIFKTFNGLNSHMVRMHGDANNLTVDKELNNAESSVVEKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -