Lser010058.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- grau
- Assembly
- GCA_015586225.1
- Location
- NW:71239-82209[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.52 24 5.3 1.6 6 23 304 321 304 321 0.98 2 19 0.00048 0.022 14.9 0.8 1 23 327 349 327 349 0.98 3 19 0.0013 0.061 13.5 1.7 1 23 357 379 357 379 0.96 4 19 1.3e-05 0.00058 19.9 0.5 1 23 387 410 387 410 0.97 5 19 0.1 4.8 7.5 1.1 3 23 418 438 417 438 0.96 6 19 0.0029 0.14 12.4 0.2 2 23 447 469 446 469 0.94 7 19 1.3 59 4.1 2.0 1 23 477 500 477 500 0.90 8 19 5.4e-06 0.00025 21.0 1.6 1 23 506 528 506 528 0.98 9 19 1.2e-05 0.00054 20.0 1.8 1 23 534 557 534 557 0.98 10 19 8.5 4e+02 1.5 0.5 2 23 1012 1034 1011 1034 0.91 11 19 0.038 1.8 8.9 0.1 6 23 1044 1061 1044 1061 0.99 12 19 4.8e-05 0.0023 18.0 3.6 1 23 1067 1089 1067 1089 0.99 13 19 3.5e-05 0.0016 18.4 2.9 1 23 1102 1125 1102 1125 0.92 14 19 3.5e-05 0.0016 18.4 2.0 1 23 1133 1156 1133 1156 0.98 15 19 3.6e-05 0.0017 18.4 2.1 3 23 1164 1185 1162 1185 0.92 16 19 0.032 1.5 9.1 0.4 2 23 1197 1219 1196 1219 0.96 17 19 0.00096 0.045 13.9 5.3 1 23 1226 1249 1226 1249 0.93 18 19 3.6e-06 0.00017 21.5 0.7 1 23 1255 1277 1255 1277 0.98 19 19 0.00021 0.0096 16.0 1.3 1 23 1283 1306 1283 1306 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGTTGTTTACTATGTTTGGAAATAAACAAGGAGCTTGCCGACTGCATAAGTAtaatttcaaatggaaaacAGGAACTGGATATTAAAAATATCGTAGAGAAACATTTATGGACTATGAACCATATGGAGACCCAATCCTGGTTATGTGCCCCTTGCTGGAGAGAGTTGTatgaatttcataaattttatttgcgcATAGAAGAAGCTCACAAAGAATTTGGCTTGCTGGTGAGAAATGTCGAAGAAAATGAAGTTCTACTAAAGAAGACTGCAGCCGAATTGGAAGAAAATCCTATAGAcgaattaaagaattttttgaatGAGTATAATTTGAGCGATAATCATTTAGAAGAAGGCAGCATATTAATAGAGGaacaaaaaacattattaaaagatGTATTGAACGAAGAGCAAGAGCAAACTAACTATGATATGACCTTACTGCAACGGCGTCGAAGAGGTCGTCCTCGTAAAGGGGAAGGTAAAGGGGTTAAGGTAACTAAAgccaaaacaaacaaatgtaaGCAACGTAATATCAAAGCGGTTTCTAATGGTAGTGATCccttaaataaaactaatgaaATTGATACCAACCTCACCACCTGCGAAATTAAACAAGAATCGCAAGTGCTAACTTTAGGAGATGAAAGTAATAATTCTCTTGATAACAATGATTACGAAAACAGTTTCAATGACGATAGCGACGATAGGGAATCGTTAGAGCATAATGATATTAAATCTAATCATTCTGATGCACCAAAAACGAAACGCAATGAAAGAGACAAATTCCTAgaggaaaatttcaaaatcacctGTTTTCTGTGCAGTATTCCAATGAAATCCTTCTTTGCTATGTGCAAACATTTCGAGGAAAAACACGATGAACGAGGTCATGTCAAATGTTGTAATAAGAAATTCTATAGACGTAGTGTTCTTGTCGATCATGTGCATCGTCATTTGGATCCCAACTACTTTAAGTGTAATCAATGCGGTAAGGTCTTGGCTGATAGACGTTGTCTGGAGTTGCATGTTGAAATGCATGAAGGTAATGCGGAGAAGAATCATTGTTGTGATATTTGTGGAAAAGGTTTTGCTAAAATTggtgttttaaaaaaacatagaaTGATACATTTGTCGGATGAAGAGAAACGTTTTCCTTGCTCCGAATGTGGCAAAAATTTCGGCACAAATTATTTACTTTCCAGTCATTATCGTTCAGTTCACCtaaagaaatatgtaaaaatatgtgATATTTGCGGAAAATCTATACGCTGTAAAGATGTTTTCGAACGTCATATGTTGCAACATGAAGGAAAAAGTGCTCCTACGGTAAGCTGTGACGTATGCGGTTTACGTTTGACTGATAATAAAGCCTTAAAACGCCATAAAGATATGATACATCCGGTGGGTGGAAAACAGGAATATACTTGTTCAATATGTTCGAAAATATCACCAAATTTGAAGGCCCACAAACGTCATGTACAGTACAAACACGTCATGGGATATGATCACAAGTGTACGATATGTGAAAAGGCTTTTAAACGAGCTCAAACTTTAAGGGAACATATGGCTTCACATACAGGTACGATTCTATATACCTGCCCATGGTGTCCGAAAACTTTCAATTCTAATGCCAATATGCATAATCATCGTAAGAGAGTACACCCCAAGGAATGGGAGGAAACATCGAGAGAGAGATATTCTGGAAATTTGCCACCTAATTTTAAACCTCCAACAATAACCCAACCTCCAGATTTTAATGTGCCAATAGATATaagaaaaaacaacatggtGGTTAAATGCCTGTTATGCTTAGAGTATCCTACGATACCGGGtccaaaatttttagaaatatttggaGAGGAAGGTTTACGTCTAGATATAAGTGcgattattaataaatatttttggctGAAGACAAACAGGAACTGTGAAGatgtacaaaaaatatgtatgacaTGTTGGGAAGTGGTAAGAGATTTTCATATACTCTATCAGAGAGTAGAGGAAGTTCATAAACATATagcagtcaagactatagtattggACGATCCACTACCTCAGGATGTTATGCTCAAGTCCGAAGATGATCCTTCTATGGCCCAAGATCCCATTATGGAAGATAATGGCATGGGTGATTCCATATTTGATCCGGAAGTTAAGGTTGAGGTACATGATTTGGATTTGTTGCCACAAATAGAAATATTAGAGACTGCTAATGTATCAGAGAGAAGTGCCAGATCGAGTCGTCGTGGTCGTTCTGCTCGGGATCAAAGTCCCAAGGTCTCGACAAAACGTATTAAGAAAGAACAATCTCCTGCAGCTGATGCCACTGATGTTTTTGCTTCAAATGAAAATCTCAATAAAGAAGGTTTAAACGAATCCAGCTCGTTGGAGGACCTAAACTATACTCTATTATCCAATTCAATGGATAAATCAGATAAGGAAGAAAGCAGCAATAAAAGAAGAGGTAGACCCCGTAAAACGGATAATGAAAAAGCTAAAGCTACCACACCACGTACCAAACGCTCAAAGAAACAACAGCAGGCCTCAGATGCGGCTATAAAGAGCGAACAAGATGTGGAAGATCAACCTTCCTGTTCTACAGCACAACAAACGGGTAACGCTGATGCAGCAGAGCCAAAAATCAAAACAGAAAATCCCACAGATGAACAAAACTATGATAGCTTTGCCATAGCCGCTGAAAATTTCGAAGATGATGATGCCTATGCACAagatgattatgatgatgataatgataataACTACAATAAGGACTCGGAAGAATCCTCTCACTCAGAGCTAGAATCTGATGCTTCGAATGACTCTGACTGGGGCGAAAGTCAAAACAAGAAAAAGGAAAAGTTTGCTGTTATTATGAAAAAAGAACGCAATGTTCCCAAGAAATATAAGAAACGTGAAAAACCTTTGGTAGAACCAAAACGCATGAGTCGAGAAGAAATTGAGGCCCGTCAAGCCCAACAGGCCGAATATGATTCCATAATAACgaaattctttgaaaaaatacGCTGTCCTAAATGTGAACTTCTGGTCCATACGTTCGGAGAAATGCGTGCTCATTTCCGCTTGGATCATAATGACGATCATGGCTTTGTCGAATGTTGTGGTCGTCGTTTTGCCACACGCAAATTTCTCGCCGAACACATATTGGTTCATTACAATCCCGAACATTTCAAGTGCAAGACATGTGATAAAGTCTGTCGTGATTCTACGCAACTGGAGAGTCACGAACAAACTCACCTGCCCAATCCACCTGCATCGAAATACAAGAAAACGTTCCAGTGTGAAAAATGCTCGAAAACATTTTCCTCTAAAGCTTCATTTGAACATCACATGGTGGCGAAACATGTACCACGAGAAGAATTCAAATTTGAATGTCCCGAGTGCAAGAAAAAatGTCCAACTGAAACAAAACTCAAAGATCACATGCGCAGTGTACACGATCCACAGAGAACGGTGATCTGTGATAAATGTGgcaaaacatttaaaagtaCCTACAGTCTTAAAAAACATCACGAACTGGAACATTCGGATGTACCAAAACCAGCACCCATTCCTCAACAATGTGAAATATGTGGTGCTTGGCTACGGCACTTGTCAGGTCTTAAACAACACATGAAAAATATACACGAAGGCGTGCAGACAGAACATCGTTGTCATATTTGCAATAAAGTCTCTTCAACGGCACGAGCTCTAAAAAGACACATTTATCATAATCATGAGTGTATAAGAAAATTCCAGTGTACAATGTGTGATAAGGCATTTAAAAGGGCACAGGACTTAAggGAGCATACATCTGTTCATACAGGCGAGGTGTTGTATACTTGCCCCAATTGTCCCATGACTTTCTTTTCGAATGCTAATATGTACAAACATCGACAACGTCTGCATCGGGCCGAATGGGAGGCAGATCGTAGTAAACCTATACCACCAAATATTATGAAACAAGCTAAACAGGGtagtaaatttgttaaaacaaaacgtGCACCCGGCGAAACTACACCCTCCCATTTGGTAACACCATTACCCATTATACCACCTTCAACGGTTATAAATCCTCAAATATTATATGCCAACATGACGTTACATTGA
- Protein Sequence
- MESCLLCLEINKELADCISIISNGKQELDIKNIVEKHLWTMNHMETQSWLCAPCWRELYEFHKFYLRIEEAHKEFGLLVRNVEENEVLLKKTAAELEENPIDELKNFLNEYNLSDNHLEEGSILIEEQKTLLKDVLNEEQEQTNYDMTLLQRRRRGRPRKGEGKGVKVTKAKTNKCKQRNIKAVSNGSDPLNKTNEIDTNLTTCEIKQESQVLTLGDESNNSLDNNDYENSFNDDSDDRESLEHNDIKSNHSDAPKTKRNERDKFLEENFKITCFLCSIPMKSFFAMCKHFEEKHDERGHVKCCNKKFYRRSVLVDHVHRHLDPNYFKCNQCGKVLADRRCLELHVEMHEGNAEKNHCCDICGKGFAKIGVLKKHRMIHLSDEEKRFPCSECGKNFGTNYLLSSHYRSVHLKKYVKICDICGKSIRCKDVFERHMLQHEGKSAPTVSCDVCGLRLTDNKALKRHKDMIHPVGGKQEYTCSICSKISPNLKAHKRHVQYKHVMGYDHKCTICEKAFKRAQTLREHMASHTGTILYTCPWCPKTFNSNANMHNHRKRVHPKEWEETSRERYSGNLPPNFKPPTITQPPDFNVPIDIRKNNMVVKCLLCLEYPTIPGPKFLEIFGEEGLRLDISAIINKYFWLKTNRNCEDVQKICMTCWEVVRDFHILYQRVEEVHKHIAVKTIVLDDPLPQDVMLKSEDDPSMAQDPIMEDNGMGDSIFDPEVKVEVHDLDLLPQIEILETANVSERSARSSRRGRSARDQSPKVSTKRIKKEQSPAADATDVFASNENLNKEGLNESSSLEDLNYTLLSNSMDKSDKEESSNKRRGRPRKTDNEKAKATTPRTKRSKKQQQASDAAIKSEQDVEDQPSCSTAQQTGNADAAEPKIKTENPTDEQNYDSFAIAAENFEDDDAYAQDDYDDDNDNNYNKDSEESSHSELESDASNDSDWGESQNKKKEKFAVIMKKERNVPKKYKKREKPLVEPKRMSREEIEARQAQQAEYDSIITKFFEKIRCPKCELLVHTFGEMRAHFRLDHNDDHGFVECCGRRFATRKFLAEHILVHYNPEHFKCKTCDKVCRDSTQLESHEQTHLPNPPASKYKKTFQCEKCSKTFSSKASFEHHMVAKHVPREEFKFECPECKKKCPTETKLKDHMRSVHDPQRTVICDKCGKTFKSTYSLKKHHELEHSDVPKPAPIPQQCEICGAWLRHLSGLKQHMKNIHEGVQTEHRCHICNKVSSTARALKRHIYHNHECIRKFQCTMCDKAFKRAQDLREHTSVHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRSKPIPPNIMKQAKQGSKFVKTKRAPGETTPSHLVTPLPIIPPSTVINPQILYANMTLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -