Lser003155.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- -
- Assembly
- GCA_015586225.1
- Location
- NW:32809-37221[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.059 2.8 8.3 0.8 2 23 269 291 268 291 0.94 2 19 0.36 17 5.8 0.2 6 23 300 317 300 317 0.98 3 19 6.6e-05 0.0031 17.6 1.6 1 23 323 346 323 346 0.95 4 19 0.0024 0.11 12.7 1.6 2 23 353 374 352 374 0.97 5 19 8.8e-05 0.0041 17.2 0.1 1 23 381 404 381 404 0.98 6 19 0.11 5 7.5 0.4 2 23 409 430 409 430 0.96 7 19 0.017 0.8 10.0 0.1 1 23 438 461 438 461 0.91 8 19 0.00067 0.031 14.4 0.0 1 23 468 491 468 491 0.96 9 19 1.3e-07 6.2e-06 26.1 2.1 1 23 497 519 497 519 0.98 10 19 0.00035 0.016 15.3 5.9 1 23 525 548 525 548 0.98 11 19 0.0017 0.078 13.2 0.3 2 23 890 912 889 912 0.93 12 19 3.1e-05 0.0014 18.6 3.9 1 23 945 968 945 968 0.95 13 19 3.4e-05 0.0016 18.5 4.6 1 23 977 999 977 999 0.98 14 19 0.00059 0.027 14.6 0.8 1 23 1005 1028 1005 1028 0.96 15 19 0.076 3.6 7.9 0.2 2 23 1033 1054 1033 1054 0.95 16 19 0.017 0.78 10.0 0.7 2 23 1063 1085 1062 1086 0.93 17 19 0.0026 0.12 12.6 0.1 1 23 1092 1115 1092 1115 0.96 18 19 4.7e-05 0.0022 18.1 0.1 1 23 1121 1143 1121 1143 0.99 19 19 8.1e-05 0.0038 17.3 6.2 1 23 1149 1172 1149 1172 0.98
Sequence Information
- Coding Sequence
- atgtCTATAAAATTATGCTGCAGCTTGTGTTGCTCTCCAAGTAGCGAATATAAAACATTACAAAATGAAGTGGGAGACAGTACAGAAGTATATGAAATTACTGTGAAATATTTTGATCCCATGTTAATTACCGACGAAGAattccctaaatgttcacaaGAACACAAAGTTCTTTGCCAGGACTGTTGGGTGCCCATTAAAGAGTTCCATGAATTTCAGCAGAATGTTATAAAGACACGTACACTGCTGGAGAAATCGGATATAAAACAATTGCCATTGATTATTAAAACGGAAAATGAAACTGAGCTGGATGAGGACAAAGAATGTGATGATGatagatattttgataaaagtgACGATGATAAAGATGATGATTATGATATTGGTTTAGATGATATAAGtgttaaaaatgatttaaaagagAACTCAGTAAGTACAGATGAAGATGACGAGAAACCTTTAATAAGctggaaaacaacaaaagtagttaataataaaacaaaaaatgatgCGAGTAGTAAAAAAACAGATTCCGACAGCACCATTCAAAAGCCTAAAGGAAAACGAGGCAGAAAACCAAAAAATGTAGCTAAGACAAGGGGAAAACGAGAGCAGAATGATAATGAAACTGAAAATACAGACCAGGAAGGAAACAATAATgatataaaaacgaaaaaaactaaattggaTAATAATGTTGTGGACAATGGTGATGATGATAAACAAGAAAAGAGTAAttctaaatttaatttagaaaaggCACGTGAATCTGATGCTTTCATCAGGGAATGGAAACCCATATTAGAATGTGATTTATGCGAAGAGTCCTCCACAAGTTTTGATAAATTGCGTACACATTTTagagaaaaacataaaactagaTTCTATATAAAGTGTTGTGAGCGTAAGTTCTATCGACGTTATGTATTAGTTAATCACATACAGCTGCATCTCAATCCGGAAACACACAAATGTGACATATGCGGAAAAGTAAGTgctaataaaaataatcttaaactACATAAAAAGTTAATGCACGAAGAAATCGAACAACTGGAATGTGAGGTTTgtcataaattatttaatttaaaaacctcATTAGATCGTCATTTACTCACCCATGTAACGGGCGATAAGGACTTTGTGTGTCAAGAATGTGGCAAGGGTTATGTGCTGGAAGTTCAACTTAAGTCGCACATCAAAACTGTACACAATGTGGATCGTGTATGCGATCAGTGTGGAAAAACTATACATGGTATACAGGCTctgaaaaaacatttaatgGAACATGCTGGCATTGCAAAACCCAAATTTCCCTGCGACGAATGTGGTGTCGAGTTGAATTCTCGTAATGGCCTAAAGCGTCATAAGGCTGCCTTTCATCATGACGGTTCAACGATTTATGTTTGTGGCGTTTGTGGTAAAGTAGCGTCCAGCGAAAGTGCTTTactaaatcataaaaaatatgtcCATGAAGAGGAGCGTAAACATAAGTGTACTTATTGCGATAAAGCCTTTAAACGTCCAAAAAATCTACAAGAACATATAGCCACTCATACAGGCCAGGATCTGTATCAGTGTCCTCATTGTCCACAAACATTTAAAGTTAGCGCTAATATGCATCATCATCGTAAGAAAGTACATCCAATAGAATGGGAAGAGGGTAGAAAGAATCGTTTACAAGTACCTAAAGTTGATATAAATCATGTAAAGAATCAAGTTGTACTTCAATTTATAATGTCCACAACATCTTTGTGTCGTTTGTGTATCTGTGACTATACGGAATGTAAAAGTTTATTCGATGAATTTGGTCAGGGAAATGAAGTCTACGAAATTACTGTAAAATATTTCGATCCCATGTTTCTTAACTCACAACAATATCCGCAACTCTCTATGGTTATTTGTATGAAATGCTGGCATCATATCAATGATTTTCATAGTTTCCAACAGACGGTACTCAATGCTCAAACAAAACTAGAGCAGGAATTTAAACAGATTGTTACCAGCATTAAATTGGAAGAAGATTTGTTAAATGGCTCTGAACAACCCTTAATTATAAATTCCCAAAATACTGAGGAGCAGGCTTTATATCATAATGTCTTTAATAATGTTTGTGTCGATGTGGAGgagaaaaatgaaatatttctacCGGATTTAGATGTGGACGATATTAAGGATGATAATCCCTTTTCAACAGATGATGAAAAGCCTTTGTTAGATAGTTTACCCTTAAGCACAAGAAAAAAGCGCGGAAGAAAAcctaaaaaagaagaagatatTGATAAGGATAACTCCAGTGTAAAGCGCACAAGAAAACccagaaataaaaacaatacagAAAATAAAACCCAGGCGAAAACCACCTTAAAACGCAAAGCAAAACCAAAAGATACAAATGATAAAATTCCTGCAGTTAAAACGGAAACTGAAAcagaaaattctctaaaaaatgaCGAAATCAATGAGCAAGATACTCATATCTCTTCAAATGAGGATGAAGACGATGATTATGATATTGAACatgatgataatgataatgatgacaGCGATAATAATCATCATCAAGATGATCCAGATGCCTTTGTTTCATCCAATGATAAACAGAAGCCGggcaaacaaaaaactaaagaaatcgATGCATTTATTGCGGAATGGAAACAAGAATTGGAATGTGACATATGTAATctggcttttacaaatttaacttttctaagaaaacattttagcaTAGAGCATCCGAAGCAGAAATGTTATGTTTCCTGTTGTCAGCGTAAATTAAAACATCGTTTTGATATAGTCGAGCACATACGCTACCACATAGATCCTAACACTTTTAAATGTAAGCTATGCGATAAGGTTTCTACCAATAGTCGTAATTTGAACAAGCATATGCACGAGAAACATACAGCCGAAGGTCAAGAGCGTCCTTTTGAATGTACGATATGCCAAAAACGTTTTGCTAAAAAGTGCACTCTCAAAACGCATATGGAAACACACGATACAGGCAAAGATTTTAAGTGTAGCGAATGTGGAAAAGGCTTCTCTACCGAACAACGCCGCAAGATTCATGAACGTATGGTCCACAATGTTGATCGTGTTTGCGACCAATGTGGCAAAACTATACATGGTGTTTATGCTCTAAAGCAACATATACTCGAACATGCTGGCATTAAAAAACGTAAATGGCCCTGTGATCAGTGTAATGCTGAACTAAATTCTCGTTCCAGTTTAAAACGTCACAAAACGGTGGCACATCATGATGGTTCTACGGTGTATGTGTGTAGTGAATGTGGTAAAATTGCTCCTACCGAGACGGCGTTACGTAGTCACAAAAAATATGTCCATCAAGCAGAGCGTAAATTTAAATGTACCATTTGTGACAAAGGCTTTAAAGTTGCCATTGTATTGCGCGAACATATGGCTACTCACACGGGAGAAGATTTATATCAGTGTCCTCATTGTCCAAAGACATTTAAAGTTAATGCCAATATGCATCATCATCGAAAGAAGGCCCATCCCAAAGAATGGGCTGAAGGAAGAATGAATAAACCGATTATCACAAAAGTAGACGTTAATTTGGTATCAAATGaagttgttatttaa
- Protein Sequence
- MSIKLCCSLCCSPSSEYKTLQNEVGDSTEVYEITVKYFDPMLITDEEFPKCSQEHKVLCQDCWVPIKEFHEFQQNVIKTRTLLEKSDIKQLPLIIKTENETELDEDKECDDDRYFDKSDDDKDDDYDIGLDDISVKNDLKENSVSTDEDDEKPLISWKTTKVVNNKTKNDASSKKTDSDSTIQKPKGKRGRKPKNVAKTRGKREQNDNETENTDQEGNNNDIKTKKTKLDNNVVDNGDDDKQEKSNSKFNLEKARESDAFIREWKPILECDLCEESSTSFDKLRTHFREKHKTRFYIKCCERKFYRRYVLVNHIQLHLNPETHKCDICGKVSANKNNLKLHKKLMHEEIEQLECEVCHKLFNLKTSLDRHLLTHVTGDKDFVCQECGKGYVLEVQLKSHIKTVHNVDRVCDQCGKTIHGIQALKKHLMEHAGIAKPKFPCDECGVELNSRNGLKRHKAAFHHDGSTIYVCGVCGKVASSESALLNHKKYVHEEERKHKCTYCDKAFKRPKNLQEHIATHTGQDLYQCPHCPQTFKVSANMHHHRKKVHPIEWEEGRKNRLQVPKVDINHVKNQVVLQFIMSTTSLCRLCICDYTECKSLFDEFGQGNEVYEITVKYFDPMFLNSQQYPQLSMVICMKCWHHINDFHSFQQTVLNAQTKLEQEFKQIVTSIKLEEDLLNGSEQPLIINSQNTEEQALYHNVFNNVCVDVEEKNEIFLPDLDVDDIKDDNPFSTDDEKPLLDSLPLSTRKKRGRKPKKEEDIDKDNSSVKRTRKPRNKNNTENKTQAKTTLKRKAKPKDTNDKIPAVKTETETENSLKNDEINEQDTHISSNEDEDDDYDIEHDDNDNDDSDNNHHQDDPDAFVSSNDKQKPGKQKTKEIDAFIAEWKQELECDICNLAFTNLTFLRKHFSIEHPKQKCYVSCCQRKLKHRFDIVEHIRYHIDPNTFKCKLCDKVSTNSRNLNKHMHEKHTAEGQERPFECTICQKRFAKKCTLKTHMETHDTGKDFKCSECGKGFSTEQRRKIHERMVHNVDRVCDQCGKTIHGVYALKQHILEHAGIKKRKWPCDQCNAELNSRSSLKRHKTVAHHDGSTVYVCSECGKIAPTETALRSHKKYVHQAERKFKCTICDKGFKVAIVLREHMATHTGEDLYQCPHCPKTFKVNANMHHHRKKAHPKEWAEGRMNKPIITKVDVNLVSNEVVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -