Lser002116.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- -
- Assembly
- GCA_015586225.1
- Location
- NW:73077-76198[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.3e-06 0.0002 21.3 2.8 1 23 148 170 148 170 0.98 2 17 7.4e-05 0.0034 17.4 2.2 1 23 175 197 175 197 0.98 3 17 0.00019 0.009 16.1 1.0 1 23 200 222 200 222 0.97 4 17 0.00033 0.015 15.4 1.1 1 23 228 252 228 252 0.96 5 17 0.00049 0.023 14.8 0.2 2 23 259 280 258 280 0.97 6 17 0.00037 0.017 15.2 1.5 1 20 286 305 286 308 0.94 7 17 0.00025 0.012 15.8 3.8 1 23 314 336 314 336 0.96 8 17 1.7e-05 0.00081 19.4 0.2 1 23 342 364 342 364 0.98 9 17 0.38 18 5.8 0.3 2 23 442 464 441 464 0.92 10 17 0.0016 0.074 13.2 4.3 1 23 571 594 571 594 0.96 11 17 1.1e-05 0.0005 20.1 2.7 1 23 599 621 599 621 0.99 12 17 0.00021 0.0099 16.0 0.5 1 23 624 646 624 646 0.96 13 17 0.00031 0.015 15.5 0.4 1 23 652 676 652 676 0.96 14 17 0.0035 0.16 12.2 0.2 1 23 682 704 682 704 0.98 15 17 8e-05 0.0037 17.3 1.5 1 23 710 732 710 732 0.97 16 17 0.00037 0.017 15.2 5.0 1 23 738 760 738 760 0.96 17 17 2e-05 0.00092 19.2 0.1 1 23 766 788 766 788 0.99
Sequence Information
- Coding Sequence
- atgttaaaaaattgttttttacctatacaatataataatttaactaACAAAACTTGTGGCGAAATTGTTTGTCAAAGTGAAACTGCCTTCAGCattatatgtaaattttgtgaCTTAAGAATTTTCGAATATGAAGAATTTCTGCAACATTTTCGCAATAACCACTGGACACAGCAGCTAAATGTAAAGAATGAAGGAGGCAACGAAGTCCCAGACGAAATCGAAAATGAAAAAGACATAAAACCTGAAATATATGAGGAAACGAAAATTTTATGTGATGTAGACCATTTAGATGAAACAGAAGAGGATTTGGAGACAAATGAAGATGATGAATGGCAGCCGGAAATGGAAGAGGAATACAATGAGGACTCAAATGATATGACAGTAACCAAAGCTATCTTGAAAAAGCCTGTGAAAGTCAACAAAAAAAGAGAACGTCCCTTTAAATGTGAGATGTGTACACGAACATTTAGCAACAAGTCCAACTATGAAGCACATAAACTTAAGCATAAAACTGTACAGTACAATTGTGATAAATGCAGTAAAACTTTCGTGACTGAACATGAACTTGGCCTTCATCAACGTTCTCATAATGGTTACAGCTGTCCGATTTGTAATATGTCTTTTATGAAATACGAATCATTGCGTACTCACAAGGAGTCtcatatagaaacaaaaaatttcatttgcACTTATAAAGATTGCAATAAAGCCTTTGCCACCAAACGTCGTCTAGGCTCTCATATGCGCTTACACATACGAGAACCTACACTGGTGTGTGAATTGTGTGGCGGTCGTTATCGCTCGACAAAAGAACTAAACGATCATATACGTAGACATACGGGTGAAAAGCCATTTGCTTGCAATTTATGTGATCGGCGCTTTACATCAAAATCTTTGTTGGGCGAACATATGGCGTGTCATGAAACGGAACGTAAACATGTATGTGAAGTATGTGGTAAAGGCTTTAATCGTCCTAAGGCATTATACCATCATAGACACTTACATTTGGAAGTAAAGAAATTCGTGTGTAAGATATGCGGTGCCGCCTATGCACAGTGTGCAGGATTATCGGCTCATATGCGTAAACATAAGGAACAGGCCAATATGCCAACAAATTCCCCtagaaatgatatatttttcagaaaaaatggtATCACCTTGACTGAATTCCCCATTGTAAACAATCGAAATTgtcagtttgtttatttttctttaaaaaaaaaaatgttaaaaacttgTACACTATCCACAACTTGTACAAATTTCACAAATAAAACTTGTGGCGAAATTGTTTGTCAAACCGAAACTTCATTTATAATCGTCTGTAAATTATgtgatattaaaatatttgattatgaggaatttattaaacattttcgtCTGACGCATTGGCCAGAAATTTGTAATGATAAAACtataacaaataattacaatagtaaatggaaaaataatattaaaaccgAAAATGACACAGATGAAGAAGAATTTACAAATAATGACTGCGATAAGGGGAATGTAGCAATTGAGATTGATATTAAACAACCGTCTAAAGGTGGCAGAGGCAGTGATAGTGAAGAGGAGAACAGAGGAGTAGTTACTGAAAATGAATTGGAACATGTGAACTCAAGTGAGGATTCAGAGGATTTGTCAAAGTCTTTggtaattttaaaaaagGCCACGGACAAATCTTCCTCCAAAGAAAAACGTTTCGAATGTTCGGAATGCAAACGTAAGTTTACCACAAAATTCTATTTACGTTTTCACATACGACAACAACATGAaccaaaaacttttcaatgtgATAAATGCAGCAAATCCTTTGTGGAAAAACGTTATCTAACCTTACACCAGCGTTCCCACATAGGTTACACTTGCCAGATTTGCAATAAAGTCTTTGATAAATATGAAGCATTACGCTATCATGGTGAAAGCCACATAGAATCGAGAAATTTCATTTGTGATTATGAAAATTGTGGTAAGGCATTTCCCAACAATCGCCGCCTGAGTGCTCACAAACGTAGTCATTTTGCTCTGGCGACGTTTGTTTGTGAAATTTGTGGTTCACGCCAGCGTAGTAAAGAGTTTTTAATCGTTCACATACGCACGCATACCGGTGAAAAGCCCTATGCTTGCAGTCAATGCGATCGTCGTTTTGCCTCCAAACATTTTCTACAAGATCATCAGGCAGTACATGCTACAGAACGTTCTCATGTGTGTACGGTTTGTGGTAAGGCTTTCGCCAGCAGTAAATCCCTctatcatcatcgtcatctgCATTCGGGCATAAAGAAATATGTGTGTAAAATATGCAATAGTGCATACTCTCAGGCGGCTGGACTGTCGGCCCATATGCGTAAACATAAACAGGATAGCGGTCTGTTGGATGTGCAGCAAACAACATCTAACACTTGA
- Protein Sequence
- MLKNCFLPIQYNNLTNKTCGEIVCQSETAFSIICKFCDLRIFEYEEFLQHFRNNHWTQQLNVKNEGGNEVPDEIENEKDIKPEIYEETKILCDVDHLDETEEDLETNEDDEWQPEMEEEYNEDSNDMTVTKAILKKPVKVNKKRERPFKCEMCTRTFSNKSNYEAHKLKHKTVQYNCDKCSKTFVTEHELGLHQRSHNGYSCPICNMSFMKYESLRTHKESHIETKNFICTYKDCNKAFATKRRLGSHMRLHIREPTLVCELCGGRYRSTKELNDHIRRHTGEKPFACNLCDRRFTSKSLLGEHMACHETERKHVCEVCGKGFNRPKALYHHRHLHLEVKKFVCKICGAAYAQCAGLSAHMRKHKEQANMPTNSPRNDIFFRKNGITLTEFPIVNNRNCQFVYFSLKKKMLKTCTLSTTCTNFTNKTCGEIVCQTETSFIIVCKLCDIKIFDYEEFIKHFRLTHWPEICNDKTITNNYNSKWKNNIKTENDTDEEEFTNNDCDKGNVAIEIDIKQPSKGGRGSDSEEENRGVVTENELEHVNSSEDSEDLSKSLVILKKATDKSSSKEKRFECSECKRKFTTKFYLRFHIRQQHEPKTFQCDKCSKSFVEKRYLTLHQRSHIGYTCQICNKVFDKYEALRYHGESHIESRNFICDYENCGKAFPNNRRLSAHKRSHFALATFVCEICGSRQRSKEFLIVHIRTHTGEKPYACSQCDRRFASKHFLQDHQAVHATERSHVCTVCGKAFASSKSLYHHRHLHSGIKKYVCKICNSAYSQAAGLSAHMRKHKQDSGLLDVQQTTSNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -