Basic Information

Insect: Lucilia sericata
Gene Symbol: -
Assembly: GCA_015586225.1
Location: NW:27061-49720[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.018 0.84 9.9 0.3 2 23 282 303 281 303 0.96

2 15 3.8e-05 0.0018 18.3 5.1 2 23 310 331 309 331 0.97

3 15 2.4e-07 1.1e-05 25.2 0.5 1 23 337 359 337 359 0.97

4 15 1.4e-05 0.00068 19.7 1.5 1 23 365 387 365 387 0.97

5 15 1.7e-05 0.00081 19.4 5.4 1 23 392 414 392 414 0.98

6 15 0.00022 0.01 15.9 1.9 1 23 420 443 420 443 0.97

7 15 5.1e-07 2.4e-05 24.2 0.7 1 23 448 471 448 471 0.97

8 15 1.5 69 3.9 0.2 1 13 478 490 478 492 0.87

9 15 7.6e-05 0.0036 17.4 0.1 2 23 690 711 689 711 0.96

10 15 0.0016 0.075 13.2 0.1 1 23 765 787 765 787 0.97

11 15 2.4e-05 0.0011 19.0 0.9 1 23 793 815 793 815 0.96

12 15 0.0011 0.051 13.7 1.8 1 23 821 843 821 843 0.98

13 15 5.1e-05 0.0024 17.9 1.1 3 23 851 872 849 872 0.96

14 15 4.3e-06 0.0002 21.3 0.2 2 23 878 899 877 899 0.96

15 15 4.3e-06 0.0002 21.3 1.5 1 23 905 928 905 928 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.018	0.84	9.9	0.3	2	23	282	303	281	303	0.96
2	15	3.8e-05	0.0018	18.3	5.1	2	23	310	331	309	331	0.97
3	15	2.4e-07	1.1e-05	25.2	0.5	1	23	337	359	337	359	0.97
4	15	1.4e-05	0.00068	19.7	1.5	1	23	365	387	365	387	0.97
5	15	1.7e-05	0.00081	19.4	5.4	1	23	392	414	392	414	0.98
6	15	0.00022	0.01	15.9	1.9	1	23	420	443	420	443	0.97
7	15	5.1e-07	2.4e-05	24.2	0.7	1	23	448	471	448	471	0.97
8	15	1.5	69	3.9	0.2	1	13	478	490	478	492	0.87
9	15	7.6e-05	0.0036	17.4	0.1	2	23	690	711	689	711	0.96
10	15	0.0016	0.075	13.2	0.1	1	23	765	787	765	787	0.97
11	15	2.4e-05	0.0011	19.0	0.9	1	23	793	815	793	815	0.96
12	15	0.0011	0.051	13.7	1.8	1	23	821	843	821	843	0.98
13	15	5.1e-05	0.0024	17.9	1.1	3	23	851	872	849	872	0.96
14	15	4.3e-06	0.0002	21.3	0.2	2	23	878	899	877	899	0.96
15	15	4.3e-06	0.0002	21.3	1.5	1	23	905	928	905	928	0.95

Sequence Information

Coding Sequence: atgaaaataacttGTCGAATATGTAAAATACAACAAGGAGAATTCTTTACGCTTGATAGTGTAGTACCTGTTTATGGTCAAATGGAACACAAGCTattggaaatatataataaatgttttcaaTTGAATGCCCAACAACAAGATGCTTTGCCGCAGGTGGTGTGTTTGACgtgtttagaaaaattaaaagaattttatgaaTTTCGATTGAAAGCTGAAAAAACTGACTTGGAATTAAGAAAAGTTTTACAAGAATCCCAAAGGCAAGAAATAAAATCTGAAATATTGGAGAGATATCATCAGCAAACGCCggataatataaatatatatataagcgAAACAAATAATGCATCGCTAGCAATTAAACCAGATTTGGAAGACGAAGTTATTACCACTGAAGATGAATACGAAGATGATGAGGAACGTTATGAAAGTGATGCCAAAACACAACAACAGGAAGACGACGAGGAAGAAGTTGAAGATACTGATATTTTATTTGAACTATACAATAAGAATGATAGTTGTATGGAAAACTATCTAAATTTTGATAAACAGGAAGAGGAATCAGAAGAAATAATTGAAGAAGACTACAACAGTGATCATGTGGAACATGATACTGAAATTGAAATGAATAATACTCTAGCCGACGTTATTAATAGTGCTGAAATAGAAAGCAATAAAATACAATCAAATTATACTCCATCATCAGATGATATTGAGGCAATAAATTTAGAATCGCAAAAGAATATGCCAATCGTAGAAATTACAAGACTTCAAGTACCATTACAAACTGGTCAAATTCAGACAATAATGTTGGATCCCTTGGTTGAAAGTAGAAAATGGCAGTGTGCTGATTGTGGACGCAAATATTTGACAGAAGAGAAATTGGAACaacatcgtaaactgcataatcAATCAGAGGATTGCCAGTGTGAAATATGCGGTACTCATTTTAAGACCCTCTATGATTATCGTGAACATATGAAGACGCATGGGACGGAACGTAAATTTTCTTGCGAATATTGCGACAAGGCATTTTCTACTCGCGCCAATCTAAAGGCTCATCTATACATTCACACCAATTTACGCCCTTTCAAGTGCGAAATTTGTGGTAAAACATTCCAACAGAAATCGATTTTAAAGACCCACATGACATTGCATACGGGTAAACCATTTGAATGTACTCTCTGTCATCGACGTTTTAGTCGAACAGCTCATCTTAATATCCATATGCGTCAACACAATAACATACGTCCATATCAATGTACCGAATGTCCGAGCTCCTATATGCAAAAGTCGCATTTAGATCGTCACATATCTAGCTCACATTTGGGTGTACGCTTTCAATGCACTATATGCGGTAAAATGTACACTAAGAAGCCGTCCTTGAATACTCATATGCGTGAAGCACACTGTACAACGGTGTCTTTATACAATTGTAAAATTTGCGATTTGgattttgcaaaacaaaaaggaaagttcttACTTTTTACGATGTCGTCTTCTACATCAACCAGCTGTAGGGCATGTCTAAGAGAATCATTGGAGAAATCTTATTTTGAAATGAATAAACAATGTCATTTCTCCTCGGATGATCGTAATTTTGtcgatatttttaatttttgcacacATCTTcaagtaaaaataaatgatGGATTTCCCCAAAGGATCTGTAAAGAGTGTGCTCAAGATTTACAACAAACATACGAATTTTTACAACGGGTCTTGTCAAGTGATAAGAAATTAAATGCCTTAAAACGAGATAATGAAGTTTATTGTCATGATAATGATGTTACTATTAAAGATCCTTTAGAAAATGCTACAGACAATGAAGAGACTTTAGATAATgaCAATAAATCTGAAATTATTGAAGATTATAATGAAGATGAATATTCTCGTACTTTATtagATAACGTTGATAATACTGTTGAAGATCCCCAGCACCAACACCATAACAGCACTCTTTACTCCCCTCATCTTAGTGACAACAGCAGCAGTAGTAATGATAAAGTTGAAGGCGATTTTTTCAAGTCAGTAGAATCACAAATTTTTCCCCAAGgtcgtttaaaatgtaaaatctgTAACAAGGCTTATTTCACCAATGTAGGTCTTGAAGCTCATATGGATATACATCTACCTAAAGGAAAAACGATTTCCAAATCCTCATTATTAGTtggcaaatatataaaaaataaaaagaaaatcttaaagaaTAACGATATTTCGGATGATGACGAAGAAAATACCAATGAACAGAGTGCTAAGACGAAATTGCCAAAACCAAAGAAAATGTTTCCTTGTGAAGTTTGTGGTAAACAAATGATATCTGCTTCTAAATTAAGATATCATATGGTAATGCATACCGGTGAAAAGGACTATTTATGTACAATGTGTCcTAAAGCTTATTCAACGATATATGCACTTAAACATCATATGCGGGCGCATACAGGAGAACGTCCTTATGAGTGTAAGTTCTGTGGTGATCGTTTTCTACGGCCGACAACGCTAAAAAGTCATATGCGTCGTCATACCGGAGAACGGCCGTACGGTTGTGATATATGCGGCAAACGTTTCATACAACACTCATCGATGGCTACACACATGAAACTCAATCATATGGATAAAACTATACCCTGTCCATATTGTGATAAAAAATACGCACGACAAACTGACCTAAATACACATCTGTTAAGTCATAGTGGGGATAAACCATTCGCTTGTCAAATGTGTCCAAGTCGTTTTACACGACAATCAAATCTAAATAAACATATGAATCAACAACATTATGGTGACAATCATAGTTCgggagataaaaaatttaaaaagaaatgttcAAAGGAGGTGGCCAATAATGAAGTTAAACAACAAACGGAAGGAAATGATAATACAAATTTACTAGGAGAGGATTGTATCGTCGTGGAAGTGCCAACTTGTTCCTCCCATTTAAAttccACTTCCACAAAGCTGAAAGAAACTGAATCATCAGCCATTGGCAGTTTTCAACAAATGCCAGTCATTACCAATGAGCTGCCTGATGACCAATTAAATAATTGGGACTGGCCTAATCAGACTTAA
Protein Sequence: MKITCRICKIQQGEFFTLDSVVPVYGQMEHKLLEIYNKCFQLNAQQQDALPQVVCLTCLEKLKEFYEFRLKAEKTDLELRKVLQESQRQEIKSEILERYHQQTPDNINIYISETNNASLAIKPDLEDEVITTEDEYEDDEERYESDAKTQQQEDDEEEVEDTDILFELYNKNDSCMENYLNFDKQEEESEEIIEEDYNSDHVEHDTEIEMNNTLADVINSAEIESNKIQSNYTPSSDDIEAINLESQKNMPIVEITRLQVPLQTGQIQTIMLDPLVESRKWQCADCGRKYLTEEKLEQHRKLHNQSEDCQCEICGTHFKTLYDYREHMKTHGTERKFSCEYCDKAFSTRANLKAHLYIHTNLRPFKCEICGKTFQQKSILKTHMTLHTGKPFECTLCHRRFSRTAHLNIHMRQHNNIRPYQCTECPSSYMQKSHLDRHISSSHLGVRFQCTICGKMYTKKPSLNTHMREAHCTTVSLYNCKICDLDFAKQKGKFLLFTMSSSTSTSCRACLRESLEKSYFEMNKQCHFSSDDRNFVDIFNFCTHLQVKINDGFPQRICKECAQDLQQTYEFLQRVLSSDKKLNALKRDNEVYCHDNDVTIKDPLENATDNEETLDNDNKSEIIEDYNEDEYSRTLLDNVDNTVEDPQHQHHNSTLYSPHLSDNSSSSNDKVEGDFFKSVESQIFPQGRLKCKICNKAYFTNVGLEAHMDIHLPKGKTISKSSLLVGKYIKNKKKILKNNDISDDDEENTNEQSAKTKLPKPKKMFPCEVCGKQMISASKLRYHMVMHTGEKDYLCTMCPKAYSTIYALKHHMRAHTGERPYECKFCGDRFLRPTTLKSHMRRHTGERPYGCDICGKRFIQHSSMATHMKLNHMDKTIPCPYCDKKYARQTDLNTHLLSHSGDKPFACQMCPSRFTRQSNLNKHMNQQHYGDNHSSGDKKFKKKCSKEVANNEVKQQTEGNDNTNLLGEDCIVVEVPTCSSHLNSTSTKLKETESSAIGSFQQMPVITNELPDDQLNNWDWPNQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -