Lser012016.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lucilia sericata
Gene Symbol
-
Assembly
GCA_015586225.1
Location
NW:391745-402038[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00036 0.017 15.3 1.4 2 23 80 102 79 102 0.95
2 20 0.00012 0.0055 16.8 3.4 2 23 110 131 109 132 0.95
3 20 0.00049 0.023 14.8 0.3 1 23 151 174 151 174 0.95
4 20 5.1e-05 0.0024 17.9 0.6 1 23 193 215 193 215 0.95
5 20 0.00019 0.0088 16.2 2.6 1 23 221 243 221 243 0.99
6 20 2.3e-07 1.1e-05 25.3 1.3 1 23 249 271 249 271 0.99
7 20 8e-06 0.00038 20.5 3.0 1 23 277 299 277 299 0.99
8 20 0.0021 0.096 12.9 1.6 1 22 305 326 305 329 0.91
9 20 0.00023 0.011 15.9 0.2 2 23 567 589 566 589 0.95
10 20 0.0023 0.11 12.7 0.8 2 23 597 619 596 619 0.94
11 20 0.00061 0.028 14.6 6.4 1 23 639 662 639 662 0.97
12 20 1.5 68 3.9 0.2 1 17 871 887 871 888 0.91
13 20 1.5e-05 0.00068 19.6 0.3 2 23 1068 1090 1067 1090 0.96
14 20 0.0069 0.32 11.2 8.2 2 23 1098 1120 1097 1120 0.96
15 20 0.00077 0.036 14.2 6.8 1 23 1138 1161 1138 1161 0.96
16 20 4e-06 0.00019 21.4 0.6 3 23 1189 1209 1188 1209 0.99
17 20 0.2 9.3 6.6 0.7 1 23 1215 1237 1215 1237 0.96
18 20 1.5e-07 7e-06 25.9 0.8 1 23 1243 1265 1243 1265 0.99
19 20 0.00088 0.041 14.0 5.9 1 23 1271 1293 1271 1293 0.98
20 20 0.017 0.78 10.0 0.4 1 22 1299 1320 1299 1323 0.91

Sequence Information

Coding Sequence
ATGTCTGATAGTGAagatgattatgatgatgataTTTTTGATAAAGACTTTACACAGCCTGATGAAAAAGGACTAAGCGATAGTGAGGATGAATCAGTAACAAGCAACGATTCCGATTGGGctaaagaaaaaactacaacaactgcTAAAACAAAAGAGACTGCAGATAAAACCAAAACTCCTGTGCGCTccaaaaagaaactaaaagaaAACCAAGTTGATGATAATATACCCACACCGTGTGACCAATGTGATCGTGTATTTCCAAATGCTCGCTTATTAAGTCGTCATAAACGTCATACACACGTACCCGAAGAGTTAAAAGTACAATGTCCTTACTGTACGGCAAAATTTGGACGACGCCACAATATGTATGCCCACATGAGAACACATCACAAAGACAAACCGGTAGAAGAACACATAACACAACAGAGAAAGTTTCCACGTCAATTTGCTTGTGAACAATGTGATGGTGTTTATACTAGCAAATATTATCTGCTAGCTCATATGAATCTCAAACACAATCCTGACAATGCATCGCAAAAACCAAAACGTGTTGCTCTGCCTAAAAAACGTTTCCTTTGCACTCTGTGTGGTTCCAAATTCGATACACAATCAAATTTAGATGTACACATACGACGTCACACTGGTGATAAACCCTTTAAATGTGATCTCTGTGAACGTTCCTTCTATCGGCCGTGTGATGTGCAAGCCCATCGTCGTTCACACACCGGAGAGAAACCATTCAAATGTACAATATGTGAAAAACCTTTCGCCAGatcgaataaattaaaaattcatatgcGTACACATTCCAATGAACGTCCCTATAAGTGTGATCAGTGTGAGAAAGCCTTTAAACATTCAAAAGATTTAAATATACACAAGCGAATACATACGGGTGAAAGACCGTATACGTGTGGTGTGTGTCAGAGTACTTTTACCCAGAGTAATTCCTTAAAATTGCATCAGACAAAACAGCAGCATTTTGAAATTATCGATCAAGTGGTGTCGTCATGTATCAAAGAACAAACACATCGAGATCTCCCTCAATCAATATGCGATAAATGTATACGTAGTCTAAGAACTGCCCATAAATTTATACAACAAGTGAAAGAAGTccatgaaaaactaaattttatgctAAATGAGAAATTGTCTAGCATACAGAAAATCCAAAACCCTAAAGGAGAAAAGATGGAAATTAAAGTTGAAAATAGTGCTCTGGAAGCAGAGGGTAAAATGGATTGTCTACAGGAAACACAAATCGATTTAGAAAcgtttttagaaataaaaattgaaagcaaacaaatagaaaaggAAATGGACTCATTGGATCGTTTAAATGAAACTATAGAAATTAAAGATGAAAATAGGGGAAAAAGAGATAATTTGCAAAACAAGAGTTCTATGATCGATAAGGCACAAGCTGTATTCAATAATGAGACAAATGATTCTGAATCTGTAGACACAAATATTACAGATTCGGATTCAGACTGGCAGGAAAGAGAAAATGAATCGGAGAGGAAAGTACTTAAACAGAAAAGGCTATCAGCAGACAAAAAGGACATTAATGTTGCAACTAAatcaaataataacaataaagatGCAAATGaaactaacaaaattttaacaaaaacgaAAACCTTAAGCAAAGTGAATAAATGCTTCAATGAAGAAATTGTCGAATCGGCCATACCCTGCAgtgtttgtaataaaatatttcaaaattctaaaGCCTTAGAAAGTCATCTAAAAATTAGTCATATACCAGAAGATAAGAAATGTTCATGCCCCTTATGTGGcaacaaatatgtaaaatatagcAATATGTATGCTCACATGCGTGCGGCACATGGGCAAGATTCTgttatttatatgaataaacCCGAAAGACCAGAAAGTGATTATATCTACAAATGTGATAAATGCCCCAAAAAGTATTGCCAGAAAAAAAGTCTGGTCAAACATAAACAATCAAAACATTCTCCGCGTGcaatagaaacaaaaaagaagaaaccACCTGCTGTAAATCCGGACCTTTTGGAAGTATTAACGAATATTCTGCAGGGGCAAAGGGAGATAAATACTCGACTTGAGAAAATTGAACAAACTCAAACAAGTATTATTAATAACCAAAACCTATTAAGCAATGCTCAGGATGCGATTGTGGCAAATCAACAGCAAATTGCCAATAAATTGGAGGACATAGAAACAAGTATTATGTCAAAACCTGAGATGATGGCACAGTCCAGAGTGCTAGTGCAACGCCAGGTGgccattaaaaaagtaaataaatccGTGTGCCCCATGACTGacgaaattaatgaaaaaactcTGAACGAACTCGACAATATGCTTCCTATGGCGACCCTAGAGGCAGTAGAGGAATTGGAAGAAAAACTAAGCAATCGAAAGTTTGCTCAAACAatgaaaaataaaaaaataataaaccatgAATGTCGCACCTGCTTTAATGCGACCAAAGGTTGGAATCCGCTTACAGCAAAGACACGAGATTATAAGAAACGTTTTAAGTCCTATGGTGAACTTTTACAGGATATTACTAATatcaatATCAAGGATAACAAATCTCAAGAATTACCACAATTTATTTGCGGTGACTGTTCACGTCGCCTAAAATCTGCCCATAATTTCATACAACAAGCTGCTGAAGTTAATGAACAACTTTATGTtatgttaaatgaaaaattacaaTGTTTGCAAGAAACGCAAATCGATATGGAAACTTGTATGGAAATAAAAGAGGAACCAGAACTggcaaaagaaaatttgaaatgtttagaAGAAACTCCAATCGATTTAGAACCTTGTACAGAAATTAAGGTTGAACATGAAGCAGAAGTAAAAGGAAAGGAAACATTAGATTGTTTGCAGGAAATACAAATTGTTGAGAATGTTGGTCTTGAAGTGAATACAGAAGAAGAAAACAAGCGTAAAGGGCTAGAACAGTGTAATTTGATTGAGGCCGAAAAATtggaaaaAAAGttgcaaagaataaaaaaatctgtGTTAGATAAAGATGTTAACTCCGATTTGGAATCTCAGCAATCTGAAGGCTCTGACTGGGAAGatgataataaaacaacaaacagtAAACAGCCTCAAAATAAAGTGATAAAAACAAACGAAGCTCAAGCTcccacaaaaaagaaaactgaaTATACAGATATAGCTGTACCTTGtgataaatgtaataaaattttcaaaaattccaaGCTATTGGCAGTACACCAAAGAATAAGTCATATACCGGAAGAGAAAAAATGTACTTGTAATTTGTGTGGCAATAAATTTACACGGTATTGTAATATGTATAAACATATGCGTACCTTTCATGGTCCCGAAACGGTAACTTTAATAAGCAAACGTCCGGAAGAGGATTACATTTATAAATGTGATAAATGTCACAAAAAATATTCTCGAAAAAAGAGTTTAATCTATCACACAAAGTTAAAACATTGCTCAAAAGAAGTTGACGAGAAAAATGAAAGTAACACAACTAATAACAAAGAAAGGAAGTCAGTGGATAAAGGATCCTTATGTCCCATATGCGGCAGTTCATTTACTAGTAAAACTCAGTTAACGGTACACCTTAGACGTCATACAGGTGAAAAACcttttaaatgtgatttatgtGAACGCGCTTTTCTACTCGTAACACAACTCAATAGTCATAAACGTTTACATACCGGTGAAAAACCCTATAAGTGTCAGGTGTGCGAAAAAGCTTTTCGAGTTTCAGATGATCTACGTCAACACATGCGTACCCATACGAATGTTAGACCTCACAAATGTTTGCAGTGTGAACGTAGTTTTAAACATACACAGGACTTAAAAATTCACTTACGTTCGCACACCGGCGAACGACCGTATGTTTGTGGAGTGTGTGGTGATAGTTTTCAACGTTATAATACTTTGAGATCACATCGTTTGAGAATGGGGCATGTGGAGAATTTAACAGATAAGAATGATAatgaaatattgtaa
Protein Sequence
MSDSEDDYDDDIFDKDFTQPDEKGLSDSEDESVTSNDSDWAKEKTTTTAKTKETADKTKTPVRSKKKLKENQVDDNIPTPCDQCDRVFPNARLLSRHKRHTHVPEELKVQCPYCTAKFGRRHNMYAHMRTHHKDKPVEEHITQQRKFPRQFACEQCDGVYTSKYYLLAHMNLKHNPDNASQKPKRVALPKKRFLCTLCGSKFDTQSNLDVHIRRHTGDKPFKCDLCERSFYRPCDVQAHRRSHTGEKPFKCTICEKPFARSNKLKIHMRTHSNERPYKCDQCEKAFKHSKDLNIHKRIHTGERPYTCGVCQSTFTQSNSLKLHQTKQQHFEIIDQVVSSCIKEQTHRDLPQSICDKCIRSLRTAHKFIQQVKEVHEKLNFMLNEKLSSIQKIQNPKGEKMEIKVENSALEAEGKMDCLQETQIDLETFLEIKIESKQIEKEMDSLDRLNETIEIKDENRGKRDNLQNKSSMIDKAQAVFNNETNDSESVDTNITDSDSDWQERENESERKVLKQKRLSADKKDINVATKSNNNNKDANETNKILTKTKTLSKVNKCFNEEIVESAIPCSVCNKIFQNSKALESHLKISHIPEDKKCSCPLCGNKYVKYSNMYAHMRAAHGQDSVIYMNKPERPESDYIYKCDKCPKKYCQKKSLVKHKQSKHSPRAIETKKKKPPAVNPDLLEVLTNILQGQREINTRLEKIEQTQTSIINNQNLLSNAQDAIVANQQQIANKLEDIETSIMSKPEMMAQSRVLVQRQVAIKKVNKSVCPMTDEINEKTLNELDNMLPMATLEAVEELEEKLSNRKFAQTMKNKKIINHECRTCFNATKGWNPLTAKTRDYKKRFKSYGELLQDITNINIKDNKSQELPQFICGDCSRRLKSAHNFIQQAAEVNEQLYVMLNEKLQCLQETQIDMETCMEIKEEPELAKENLKCLEETPIDLEPCTEIKVEHEAEVKGKETLDCLQEIQIVENVGLEVNTEEENKRKGLEQCNLIEAEKLEKKLQRIKKSVLDKDVNSDLESQQSEGSDWEDDNKTTNSKQPQNKVIKTNEAQAPTKKKTEYTDIAVPCDKCNKIFKNSKLLAVHQRISHIPEEKKCTCNLCGNKFTRYCNMYKHMRTFHGPETVTLISKRPEEDYIYKCDKCHKKYSRKKSLIYHTKLKHCSKEVDEKNESNTTNNKERKSVDKGSLCPICGSSFTSKTQLTVHLRRHTGEKPFKCDLCERAFLLVTQLNSHKRLHTGEKPYKCQVCEKAFRVSDDLRQHMRTHTNVRPHKCLQCERSFKHTQDLKIHLRSHTGERPYVCGVCGDSFQRYNTLRSHRLRMGHVENLTDKNDNEIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-