Lser009435.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- -
- Assembly
- GCA_015586225.1
- Location
- NW:91821-104899[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.0031 0.14 12.3 1.0 2 20 257 275 256 279 0.88 2 35 3.3 1.6e+02 2.8 3.8 6 23 289 306 289 306 0.98 3 35 3.2e-06 0.00015 21.7 2.5 1 23 312 335 312 335 0.97 4 35 1.1e-05 0.00051 20.0 1.8 1 23 344 366 344 366 0.98 5 35 0.36 17 5.8 1.0 1 23 372 395 372 395 0.88 6 35 0.008 0.37 11.0 0.4 3 23 401 421 400 421 0.96 7 35 0.092 4.3 7.7 2.5 2 23 430 452 429 453 0.93 8 35 0.0012 0.056 13.6 0.1 1 23 459 482 459 482 0.96 9 35 6.2e-05 0.0029 17.7 0.5 1 23 488 510 488 510 0.99 10 35 0.00018 0.0086 16.2 8.3 1 23 516 539 516 539 0.98 11 35 0.062 2.9 8.2 0.3 2 23 732 754 731 754 0.91 12 35 1.5 69 3.9 0.4 2 23 788 809 787 809 0.94 13 35 2.2e-05 0.001 19.1 1.6 1 23 832 854 832 854 0.97 14 35 0.0022 0.1 12.8 8.2 1 23 860 883 860 883 0.98 15 35 0.095 4.4 7.6 3.3 2 23 959 981 958 981 0.93 16 35 0.00076 0.036 14.2 0.2 1 23 987 1010 987 1010 0.97 17 35 0.035 1.7 9.0 0.8 3 23 1233 1254 1231 1254 0.93 18 35 0.15 7.2 7.0 2.0 6 23 1264 1281 1259 1281 0.98 19 35 3.3e-05 0.0015 18.5 2.3 1 23 1287 1310 1287 1310 0.96 20 35 0.007 0.33 11.2 0.1 2 23 1320 1341 1319 1341 0.97 21 35 0.033 1.5 9.1 0.4 1 23 1347 1370 1347 1370 0.94 22 35 0.28 13 6.2 2.6 2 23 1375 1396 1374 1396 0.95 23 35 0.17 7.9 6.9 0.1 2 23 1405 1427 1404 1427 0.93 24 35 0.0019 0.091 13.0 0.1 1 23 1434 1457 1434 1457 0.97 25 35 0.00036 0.017 15.3 1.6 1 23 1463 1485 1463 1485 0.98 26 35 0.00085 0.039 14.1 7.4 1 23 1491 1514 1491 1514 0.97 27 35 2.4 1.1e+02 3.2 0.7 3 23 1651 1672 1649 1672 0.93 28 35 0.34 16 5.9 2.1 1 23 1703 1726 1703 1726 0.93 29 35 0.08 3.8 7.9 0.2 1 21 1750 1770 1750 1771 0.87 30 35 0.0062 0.29 11.4 3.6 2 23 1947 1969 1946 1969 0.93 31 35 0.1 4.7 7.6 0.3 6 23 1979 1996 1979 1996 0.99 32 35 1.1e-05 0.0005 20.1 3.5 1 23 2002 2025 2002 2025 0.97 33 35 0.005 0.23 11.7 0.4 2 23 2133 2155 2132 2155 0.96 34 35 2.5e-06 0.00012 22.1 1.6 1 23 2188 2211 2188 2211 0.97 35 35 0.027 1.3 9.4 2.1 2 21 2218 2237 2217 2238 0.92
Sequence Information
- Coding Sequence
- atgtcTCTGGCCACACTGTGCCGTTTATGCGTGTGTCCTTTCCATGATTGTAAACAATTATTCGATGAAAATGGTCAGTGCAATGAGGCTTATGATATAGCCAGCAAATACTTTGACCCAATGctATTAAATTCCGAACAAGAACTCAACTCGGCCGTAATATGTCTAGAATGTTGGCAGCACATCAGtgacttttatagttttcaacaGACTGTGTATACGGCACAGTCTAAGTTAGAGGATGTTAAGCAAATTGTACCCCTAATTAAACTCGAAGAAGAACTAATAGAAGAAACACCGATTGACAGTGGAGAACTACAAAATGATGTTTTATTAAATGATGAAGAACTTAAGGACGAGGAGCACATATCTGATGTGGAAGATACATACGACGTAAGAGATGACAATCCTTTTAGTTCTGATGATGAAAGGCCACTATTGGAAAGTATTAAAAAAgtgaacaagaaaaaaactaagagaaatgcaaataaaaaagaGGAATCTGGAGATAATATGGACAAGTCGAAAACACCTCCAAAGAAGAAAGAGAAACGCATTAAAAAGGAGACCAAAAGCAAAACAAAGGCTAAAGCTGCAGACTCAGAGATTAAACCAGAAGAGGCATCAGAAGATCCTAACGATTCAGCTAATAATAATGAACAAAGTGGTAGTCAAAATGAAAACTCTACATCAACAGATAAAATTAGTTATAATAAACAAAGAACATTGGAGAATGATGCTTATATAGCCGCTTGGCGCAGTGAATTGGAATGTGAAATATGTCATGCCTCATTTTCCAATTACACATTGCTGCGTAAACATTTTGTCCAGGAACATCCCGGGGAAAAATTCTATGTTTTGTGTTGTCAACGGAAATTTACCCATCGATTTCATATAGTAGAACACATACGCCTGCATATGGATCCCAATGcctttaaatgtgaaatatgtGGTCGCTGCAGTACTAACAGTCGCAATCTTACGAAACATATAAGAGAACTACACACTGAGGAAGGAAAACTGCGTCCATTTGAGTGCAACGTATGTCATAAATCTTTCATAAACAAGACAGTATTAAGAATACACATGGAAACTCATGAAACCAATCTTACACATATGTGTAGAGAGTGTGGCAAAGGTTTTCCCTCCGAACAAAGGCGTAATCTACATGAAAAATCCGTACACAATGCAGATCGGATTTGTGATCAGTGCGGCAAAACATTACATGGTCCCTATGCTCTGAAAAAGCATCTTCTCGAACATGCTGGAGTACAGAAACGTAAATGGCCATGCGACATCTGTGGTGCCGAATTACATTCGCACTCTAGTTTAAAGAGACACAAACTTATTACACATCACGATGGTTCCACCGTTTATGTATGCAGTGAGTGTGGTAAGGTGGCCACTACCGAAATGGCATTACGTAGTCACAAGAAAAATGTTCATCAAACTGAGCGCAaatttaaatgtacaatatgTGAGAAAAGCTTTAAGTTTGCCATTGTGCTACGCGAACATATGGCTACGCACACGGGCGAAGATTTATATCAATGTCCCCATTGCACGAAAACCTTTAAGACAAATGCCAATATGCATCATCACCGCAAGAAGGCACATCCTAAGGAATGGGCCGAGGCGCGAATGAATAAACCTCAGTCGACAAAGGTTGATTTTAATTTGGTACAAAATGAAGTcTATGTTCAATGTGTTGGCGGCATATACAAGATTTCTACTATTTCCAAAAGACGGTCTTTGAGGCTCATGCAAAGCTGTTGGAAGGTACGAAGGAAATTGCCAGAACAAAATGATGACAAACTGTTAATGGTAATAGAAAATACACATGTTAATCATGAGGCGCAAGACAACCGATTGGAAGTCTTTGATATAGTTGATACAAATGCATTTAGTTCTGATAATAGGAGGCTTATAATGGAAACATTTCATATAACGCTGGAAGATATGACGGAAAATACATTAGGTATTACCGTGGAACCCAAACAAATTGATGACAAACAGCCAATAGTAATAGATAATCGATCTGagaagaaaattaaacatgaaGCACACACAGATGCATTTAGTTCTGATGATGAGATACACTTAATGGAAAGTTTTCGTCAGACTAGCCAAAAATACAATGAGCAAAAAGCCATTGAAAACGATGCAATAATAGCCGACTGGAGAAGTGAGTTGGAGTGTGTGAAATGTAATgctaattttgcaaatttctctTTATTGCGACAACATTTTATTAACGATCATGTTGAGGAGAAGCGCTGCTATATTATACCTATGTTCTCAAATTTGGCCATACATGTTAGAGATGTGCATAGTGGTAAGGGTGGTAAAAAGCGAAGTCTACAATGTCCGAATTGTTTAAAGATTATGCTCAATAAGCGTTCCTTAATAATTCACctaaaaacacacaaaacaaaGCGTTACTACAGTTCAGAAGAAGAACGTAAGTCCCATATGCATCTATTGCGCCGTAAACATATGTGTACACTTTGTGAGAAAGCTTTCAGAAGCCCACGAGATCTACGCGAACATATGACAACGCATACGGGCAAGCGTTTGTATAAGTGTCGACACTGTGAGAAGACATTTAAGCAATCTTCTAGTATGTATACTCATCATAAGAAAGCACATCCACAGGAGTGGACAGAGTCAAGTAAGAAAAGAGGCAATAGtcttaaaaaggaaaaaatgcaaataaaacaagaaaatataaaatcagaGCCTCCCAAATTGCCCGATAAAAATGATGATGCCTCTAATGAAACAGATGCTCATCAAAAATCCAAAGAAAACGATACAATAGCTGTTCAGCGCAGCTTGAAGTGCAAAGGCAGAGGAGTTCAAAAACGCAAATTGCCCTGTGATCTTTGCAGTTCACAATTTAAGTCACACTCCGATCTTAAACACCATAAACAGCTTGTACATAAATGTGTTACCGTATACGTTTGTAGTGAATGTGGAAAAGTTGCTAACACTGAATTTGCTCTACGCACGCACAAACGCAACGTTCATCTTAGAAAACGAACATTCCAAGACGATTGCCAACAATTGATCGATGACACAGGTCAATGTAATGATGCTTACGATATTGCAAGTAAATATTTTGATCCAATGTTGTTGATTGCTGATCAAGAACACACTTCTCCCATTATATGTGCAATTTGTTGGCGGCATATACAGGATTTCTACTATTTTCAACAAACAGTCTTTGAGGCTCATGCAAAACTGGACGATGTTAAGGAAGTTGCCTTAGATGTTAAAGTGGAGCTGGAACAAATTGATGATAAGCAGCTAATAGTAGAAAGTAGTTCATCTGCGAAAGATGTTAAACATGAAATAGATGTCAATCGAATAGTATCCTTTGATACAGAAGAAGATAATGTATTTAGTTCTGATGATGAAAAACCCTTAAGGAAAAATTCTGGTCAGGTGAAAGAAAAATGTTCAGCTAAACAAAATTCCAAAGAAATGGTAACTCTAAGCAAAAGCAAAACTCCTAAGAAACGTGACAAGAGTCGTAAAAAGCAAAAGTTAGAAACAACAGAGACAAATTTAAAAAGGGAAACTTCCATATTGTCGGATGAAAATGATGCCTGTAATAACAGTGAAAAAACAGATGCCCAACAAAAAACCTTAGAAAATGATGCGTTTATAGCTGCCTGGAGAAGTGAGTTGGACTGTGTGAAATGTAATGCAACATTTGCAAATTTCACCTTACTACGCAAACATTTCCTCAAGGATCATTTAGAGGAAAAGTGTTATATTGTTTGCTGTGATCGCAAATTTAGCAGTCGTTATCATATTGTGGAACATATACGATTGCATATGGATCCTAATGCATATCGCTGTGATGTATGCGGCAGATGTAGTACTAACAGCCGAAATTTGTCTAAACATATTAAAGAATTGCACAGTGAAGAGGGTAAAAGGCGCAGCCTGGAGTGTCCAACATGTTTAAAGATTTTAGCCAATAAGAACTCCTTAAGAGTTCACCTGGAAACTCACGAGACAAATCTAAACTACATTTGTCGGGAATGTGGCAAAGGTTTTCCCTCTGAACAAAAACGTACATTACACGAACGTTATGTTCACAATGCATCTCTTATTTGTGATCAGTGTGGCAAAAACCTACACAATCACTATGCCATGAAGCAACATCTTCTCCAGCATGCAGGCGTTCAAAAACGTAAATGGCCCTGTGATCTTTGCAGTGTAGAATTGAATTCACGATCTGGTCTCAAGCGCCACAAACAGCTAATACATCAAGATGGCTCTACGGTATATGTTTGCAGTGAATGTGGTAAAGTTGCTAGCACCGAAATTGCTTTGCTCACGCACAAACGTAATGTTCACACATCAGGACGTAAACATAAGTGTACACTTTGTGAAAAAGCCTTTAAATTTCCTAGAGTTTTGCGGGAACATATGGCAACACATACTGGGGAGGATTTGTATAACTGTCCGCATTGTGAGCGTACATTTAAGACAAATGCTAATATGCATCATCATCGTAAGAAAGCACATCCGCAGGAATGGGCGGAGGCCCGTCTAAATAAACCTCAAGTTACAAAAGTTGATTTTAATTTGGTGCAAAAGGAAGTTGTTATATACGATTGCCAACAATTAATCGATGATACAGGTCAATGTAATCATGCTGATGCGATATCGCCATTGTTGATTGCTGATCAAGATCACAATTGTTCCATTATATGCGCAATTTGTTGGCGGCATATACAGGATTTCTACTATTTTCAACAAACGGTTCTTGAGGCTCATACAAAATTGGAAGATtatattacagagaaaaatctaaaatcagaACTTTCCAAACTGTCTAATAACAATGATGATGACTGTAATAAGAAAATAGATGCCCAACACAAAACTTTAGAAAACGATGCGTTCATAGCCGCTTGGAGAAATGAGTTGGACTGTTTTAAATGTAATGCCAAACTTGCAGATTTCACTTTACTACAGAAACATTTTCTCAAGGATCATTCAGATAAAAAGTGCTATATTGTTTGCTGTGATCGCAAATTTAGCTGTTATCATATTGTGGAGCATATACGGCATATGGATCCCAATGCCTATCGGTGTGATGCCTGTGGTAAATGTAGTAAAAATAGCCGAAATTCGGACCAACATATTAAAGAGTTGCACAGTGAAGAGAGTAAACAGCGCAGCCTGTTTACTCTCTTCACTGTGCAAACCCACGAAACAAATCTAAACTACATTTGCCAGAAATGTGGCAAAGGTTTTCCCTCTGAACAAAAACGTACGCTACACGAACGATTATGGATTTTTTCAACATACAAACATTTACCAATTGATACGCTTTTTCTAATTATGAATCAAACTGCCTTGTGTCGTTTATGCATACGTTTATAtaatgaatttataaatttattcaatGATAATGGCCAGAGCAATGAAGCCTACGATATTGCCGTCAAATATTTTGATCCCATGTTATTGAAGCCGCAACATGAACATGACACTACCTTAATTTGTATTGTATGTTGGAGTCATATCaataattttcacaattttcaaaattctgttCTAAATGCGCAAGTGCAATTAGAAAACAGTATGGAACATATACCAATGATTAAGCTTGAAGATGAAGCCTGGATGGATCAAATAACTATTGTcgataatgaaaataatacatttacaaatacgaatcattcatatgtatatagtaaagaaattgaaaatcaTGAAGTAGCTTCCTCCAGTAGAAACAACGAATGTAAACCTAATCTAGATAAAACCAAGGAATATGAGATGTTAATAAAGAAATGGAAAGGCGTTTTGGAATGTGATTTATGTCACtataaattcaaaaactttaGTGATTTACGTCAACACTTTCAACAGCAACATCCTAGAGATAAATTCTATATTAACTGTTGCAAACGTAAATTTTACAATCGTTATGACATGGTTGAACATATACGAGTACATTTAAATCAGAATACCTACCAGTGTAATATCTGTGATAAAACATTTTCTTGTAATCGTAATTTAAACCGACATATACGACAGGTACATATTGAAAAAGTTCAGCGAGTGTTTGAATTAATGAACAATACCAACAAATCTATAAAATATCATCCTCCTATGGGTTTATTAAAGGCAGAAGAggagaataaaataaatagcaAAAAGACCTTTACTAGGTCGACCAAAGTACCACGTGGGAAAATAAATATCACCCCACAAACTGATGACAAAATTGCTGGCAATTTAGAAGTGAAAAAACAACGACAACATCATCACCAGGATCTGAAATATTTTCAACTTAAAAtttcttcaaacaaaaaaactacattGGAATATGACACACAAATAGCCGAGTTAAAAAGAGTATTAGAATGTCCTGTCTGCCGGAGAAATTTTCCGTATTATACTTCATTACGAGAACATTTCCAAACGGAACATCCTGAAGagaaatttcatataatttgttGTCAACGTAAATTTGGCAATGGCTATCAAATATATGAACATTTTCAACTCCACAATAATCCCAATGCATTTAGATGTGAAATTTGTGAACACACCTTTTCCCGGAGCGCCAGTTTAACCCGACACATACGGGAGTTACACATGCAAAATGTTCAATGGTCATGTGATCATTGTGGTGTTAGTTTTAAGTCTTGCTCGGTTTTGGGAAGACATAAAAAGAGATGTTTtggaaaaatgtgtaaaaagttgCAGCCACAACATAAATTGGAATGTCTTAATGTAACGGATAATTATGTTGGTGCAACGTTTTCAAATTATACTTTAATGCAAATTGCACCGTAA
- Protein Sequence
- MSLATLCRLCVCPFHDCKQLFDENGQCNEAYDIASKYFDPMLLNSEQELNSAVICLECWQHISDFYSFQQTVYTAQSKLEDVKQIVPLIKLEEELIEETPIDSGELQNDVLLNDEELKDEEHISDVEDTYDVRDDNPFSSDDERPLLESIKKVNKKKTKRNANKKEESGDNMDKSKTPPKKKEKRIKKETKSKTKAKAADSEIKPEEASEDPNDSANNNEQSGSQNENSTSTDKISYNKQRTLENDAYIAAWRSELECEICHASFSNYTLLRKHFVQEHPGEKFYVLCCQRKFTHRFHIVEHIRLHMDPNAFKCEICGRCSTNSRNLTKHIRELHTEEGKLRPFECNVCHKSFINKTVLRIHMETHETNLTHMCRECGKGFPSEQRRNLHEKSVHNADRICDQCGKTLHGPYALKKHLLEHAGVQKRKWPCDICGAELHSHSSLKRHKLITHHDGSTVYVCSECGKVATTEMALRSHKKNVHQTERKFKCTICEKSFKFAIVLREHMATHTGEDLYQCPHCTKTFKTNANMHHHRKKAHPKEWAEARMNKPQSTKVDFNLVQNEVYVQCVGGIYKISTISKRRSLRLMQSCWKVRRKLPEQNDDKLLMVIENTHVNHEAQDNRLEVFDIVDTNAFSSDNRRLIMETFHITLEDMTENTLGITVEPKQIDDKQPIVIDNRSEKKIKHEAHTDAFSSDDEIHLMESFRQTSQKYNEQKAIENDAIIADWRSELECVKCNANFANFSLLRQHFINDHVEEKRCYIIPMFSNLAIHVRDVHSGKGGKKRSLQCPNCLKIMLNKRSLIIHLKTHKTKRYYSSEEERKSHMHLLRRKHMCTLCEKAFRSPRDLREHMTTHTGKRLYKCRHCEKTFKQSSSMYTHHKKAHPQEWTESSKKRGNSLKKEKMQIKQENIKSEPPKLPDKNDDASNETDAHQKSKENDTIAVQRSLKCKGRGVQKRKLPCDLCSSQFKSHSDLKHHKQLVHKCVTVYVCSECGKVANTEFALRTHKRNVHLRKRTFQDDCQQLIDDTGQCNDAYDIASKYFDPMLLIADQEHTSPIICAICWRHIQDFYYFQQTVFEAHAKLDDVKEVALDVKVELEQIDDKQLIVESSSSAKDVKHEIDVNRIVSFDTEEDNVFSSDDEKPLRKNSGQVKEKCSAKQNSKEMVTLSKSKTPKKRDKSRKKQKLETTETNLKRETSILSDENDACNNSEKTDAQQKTLENDAFIAAWRSELDCVKCNATFANFTLLRKHFLKDHLEEKCYIVCCDRKFSSRYHIVEHIRLHMDPNAYRCDVCGRCSTNSRNLSKHIKELHSEEGKRRSLECPTCLKILANKNSLRVHLETHETNLNYICRECGKGFPSEQKRTLHERYVHNASLICDQCGKNLHNHYAMKQHLLQHAGVQKRKWPCDLCSVELNSRSGLKRHKQLIHQDGSTVYVCSECGKVASTEIALLTHKRNVHTSGRKHKCTLCEKAFKFPRVLREHMATHTGEDLYNCPHCERTFKTNANMHHHRKKAHPQEWAEARLNKPQVTKVDFNLVQKEVVIYDCQQLIDDTGQCNHADAISPLLIADQDHNCSIICAICWRHIQDFYYFQQTVLEAHTKLEDYITEKNLKSELSKLSNNNDDDCNKKIDAQHKTLENDAFIAAWRNELDCFKCNAKLADFTLLQKHFLKDHSDKKCYIVCCDRKFSCYHIVEHIRHMDPNAYRCDACGKCSKNSRNSDQHIKELHSEESKQRSLFTLFTVQTHETNLNYICQKCGKGFPSEQKRTLHERLWIFSTYKHLPIDTLFLIMNQTALCRLCIRLYNEFINLFNDNGQSNEAYDIAVKYFDPMLLKPQHEHDTTLICIVCWSHINNFHNFQNSVLNAQVQLENSMEHIPMIKLEDEAWMDQITIVDNENNTFTNTNHSYVYSKEIENHEVASSSRNNECKPNLDKTKEYEMLIKKWKGVLECDLCHYKFKNFSDLRQHFQQQHPRDKFYINCCKRKFYNRYDMVEHIRVHLNQNTYQCNICDKTFSCNRNLNRHIRQVHIEKVQRVFELMNNTNKSIKYHPPMGLLKAEEENKINSKKTFTRSTKVPRGKINITPQTDDKIAGNLEVKKQRQHHHQDLKYFQLKISSNKKTTLEYDTQIAELKRVLECPVCRRNFPYYTSLREHFQTEHPEEKFHIICCQRKFGNGYQIYEHFQLHNNPNAFRCEICEHTFSRSASLTRHIRELHMQNVQWSCDHCGVSFKSCSVLGRHKKRCFGKMCKKLQPQHKLECLNVTDNYVGATFSNYTLMQIAP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -