Lser001433.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- -
- Assembly
- GCA_015586225.1
- Location
- NW:111359-120983[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 6.6 3.1e+02 1.8 0.4 3 23 213 234 212 234 0.95 2 33 1.2 56 4.2 1.1 6 23 243 260 243 260 0.98 3 33 0.00047 0.022 14.9 2.7 1 23 266 289 266 289 0.97 4 33 0.12 5.5 7.3 0.9 3 23 462 483 460 483 0.95 5 33 1.7e-05 0.00078 19.5 2.3 1 23 515 538 515 538 0.97 6 33 0.029 1.4 9.3 0.7 3 23 649 670 648 670 0.96 7 33 1.7 80 3.7 1.2 6 23 679 696 679 696 0.99 8 33 2.4e-05 0.0011 18.9 2.3 1 23 702 725 702 725 0.96 9 33 0.0006 0.028 14.6 4.1 1 20 734 753 734 756 0.94 10 33 0.019 0.88 9.9 1.0 1 20 764 783 764 785 0.95 11 33 8.4e-05 0.0039 17.3 3.2 2 23 792 813 791 813 0.98 12 33 0.04 1.9 8.8 0.1 3 23 822 843 820 843 0.95 13 33 0.0069 0.32 11.2 2.9 1 23 851 874 851 874 0.91 14 33 0.0038 0.18 12.0 1.7 1 19 880 898 880 902 0.94 15 33 0.016 0.73 10.1 1.9 2 23 907 929 907 929 0.97 16 33 0.25 12 6.3 0.4 6 23 1215 1232 1215 1232 0.99 17 33 1.4e-06 6.4e-05 22.9 3.4 1 23 1238 1261 1238 1261 0.97 18 33 0.0021 0.1 12.8 4.3 1 23 1270 1292 1270 1292 0.95 19 33 0.0022 0.1 12.8 0.3 1 23 1300 1323 1300 1323 0.92 20 33 0.0021 0.1 12.8 0.1 3 23 1331 1351 1330 1351 0.97 21 33 0.31 15 6.0 0.2 2 23 1360 1382 1359 1382 0.91 22 33 0.0029 0.13 12.4 1.2 1 23 1390 1413 1390 1413 0.96 23 33 2.5e-06 0.00012 22.1 0.6 1 23 1419 1441 1419 1441 0.98 24 33 0.00038 0.018 15.2 1.3 1 21 1447 1467 1447 1468 0.95 25 33 8.3 3.9e+02 1.5 0.2 3 22 1795 1814 1794 1816 0.88 26 33 0.0025 0.12 12.6 0.3 1 23 1848 1871 1848 1871 0.97 27 33 0.00078 0.036 14.2 2.7 1 23 1880 1902 1880 1902 0.96 28 33 0.00015 0.0071 16.4 0.1 1 23 1910 1933 1910 1933 0.94 29 33 0.0011 0.052 13.7 0.1 3 23 1941 1961 1940 1961 0.97 30 33 0.2 9.3 6.6 0.2 3 23 1971 1992 1969 1992 0.93 31 33 0.00032 0.015 15.4 1.3 1 23 2000 2023 2000 2023 0.96 32 33 1.4e-06 6.4e-05 22.9 1.2 1 23 2029 2051 2029 2051 0.98 33 33 1.3e-05 0.00059 19.8 1.3 1 23 2057 2080 2057 2080 0.98
Sequence Information
- Coding Sequence
- ATGGATTCCTGTTTGTTGTGTTtggaattaaataataatttagtgGATTTCATAGAAACAAACTCCACACGATGGCAAGAGCTTAATATAACAAAGATCCTAGAAAAACACTTTTGGCCAATTGATACTATGTACTCCTGCTCTAAGATGTGTTTGTCCTGCTGGAAGCAACTTGaggattttaacaatttctacaCACGAATAGAGGAGGCTCATgaaaattttggcaaaattcaaattaaagaaGATAAAATATCATGTAATGAAAGTGAACCCTTCTCATTTGCTTGTCTGGAACAGGAAATGGTAAAAGATCACAATACTGTTTTACCAGATAACAATGTTTACGAACAGGTGGAAGATAATTGCGATATAAGTGAAGATCTGACAAATGAGGATCAGTTACTTGaatcaaattttacaaattctaGTAATAAAGCAGATCAGAATAAAGAACAAGCTAAAATTAATGCCAATCCAAATGATTCCTCTAATTCAATCGATATGGATAGTTCATATAATAATGATACAGACAGTGATTATGAACCAGATACAAATTCCTCTGAAAATGTTAAAGATGAGGTTAACAATAAGAAAAAGgatatatttataaagaaacattttaaacaaatactcTGTGACCTTTGCGCTACACCACTGGAAAACTTTAGCTCCATGAGGAAACACTTCCGAAATGTGCACAAACAACGTGCTTATCTTACTTGTTGCAATATAAGATTCTATTCAAAATCTACTTTTGTAGATCATTTACATATTCACTTAAATCCTGATTATTTCAAGTGTCAACATTGTGATAAAGTTCTAGCCTATCGACAGAGTTTTGAAAAACATATGCTGATTAGACATAGATCAAAGAGCAGGCAAAAAGTGAAACATTTGAACAGCGAAGGAGATCAAAAGCATCATACAGAAAAGCATCCAGTGGGTGGCAAACAAGATCATCCCTATACAGTGTCAGGAAGGGTTCTACGCAATCATACTAAAATAAGTCATGAAGAGGAAATCGTAAAAGACCAGAATTCTTTAGTAACAGATAATAAAGTTTCAAATCATGTAGAAAATAATTGTGATATAAATGAACATGTGGTTAATAAGGATCCGTTAGAAGAAGCAAACCTCACAAACTCTAGTAATagagaaataacaaaaactacaacacaGACAAATTCAAAGGAGGACCAGAATAATGAAGAAGAAGAGATTAATATAGAATCATGTGATTCTAACAACTCGAACAGTTTAAACAATAAGGATAAAGCTGCGGCTAATGAATCAAATCAAAGTGCTTCAAAAAGTGTTAAATACAAAGATGTAAACAAGAAAATAGATAAATTTATAGCGAAACATTTTAAACGAATGTTCTGTAACCTATGCAACATGCCATTTGAAAGCTTTACCTCCATGAAGCAACACTATCTAAAGGTACACAAACAAAGATGTTTTCTTGTTTGTtgcaataaaaagttttatgatAAATGTCGCTTTGTGGACCATTTACACACACATTTAAATCCCGATCATTTTAAGTGTCCACACTGTGACAAAGTTCTATCCAATCGAGAGAGTTTGGAAAAACATACGTTGCGTAAACATACAACAAAAGGTGTTAatcaaaaaaatcataaaaaagtttCCAAACACCTGGGAAATAATTGCGATATAAATGAAGATAAAGTAAATAGGGATCCGTTAGCAAATAAGGATCCGttagaaataacaaaaactcCAACACAAAGAAATACAAAGGAACAGAATAATGAAGCAAACATGAATCCAGAGACTTATGATTCTTCTAATCTACCCAACTCGAACAGTAAcaataatatgtataaaaacaccGCTTATAAACAACATACAAATGGCTTAAAAGCTATAAGTAAGaagaatgaaaaatttatagCGGAAAACCTTAAACAAATTCTCTGTAGTCTCTGCAACATACCATTTAAAAAGTTCGGCAACTTAATGACACACTTCCAAAAGGTACACAAACAAAGTGGTTATATTGTATGTTGCAATAAAAAGTTCTTTGATAAACCACGCTTAGTCGACCATTTACACACACATTTAAATCCCGATCATTTTAAGTGTCCACACTGTGACAAAGTTCTAAGCGATCGAATGAATTTGGAAATACATATGCTGCACAAACATAGACCAGAAGGTGTTAAGTTAAAATATACATGTGAGACCTGTGGTAAGTCTTTTGCTAATACTACCTATTTGCGCAAACATAAAATGTGCCACTTGCCACAAGAGGAAAAGAAGTTTCGCTGCGCAAAATGTGGCAAACAttatGCCGCTTCCTATCGTTTAAAAAAACACCGAGAAGAATGTAtggtttatagaaaaaagtgtcaTATTTGCGGCAACACATTTACTTCTAGTGGCGGTTATAAAACGCACATGAACAAACATGTCACACCGCCAACGATCATAAATTGTGATATTTGCGGTATACGTTTGGCCAGCAAACAAGGTCTACAATTACATAAAGAAACTTTACATCCAGTGGGTGGTAGACAAGATCATCCCTGTCCAGTGTGTCACAAAATGTTATCATCAAAAAGAGCTTTACGTCATCATAATGAAATAATGCATGGAAAAGGTTACGATTACAAATGCAACATTTGTGAAAAAGGCTTCAAGAGATTATTagatttaaaaGATCATTGTGTCATTCATACCGAAAATCCTAAATGTTCTTGGTGTCCGTTGACATTTAAATCACGTGTCAGTATGTATACTCACCGCAAAAAAATGCATCCCAAAGAATGGAAAGAATcaaaacttgaaaaatattCGGGAAACTTACCAACAGCATTGGCAAAAGTTATTAGTCCATATTTAGAGGATTTCATAGAAACAAATTCCACACAATGGCAAGAGCTCAATGTAACAAAAGTCCTGCAGAAACACTTTTGGCCAATGAAATTAAGTGCCTGCTCCTGGATGTGTTCATCCTGTTGGAAGCAACTGGAGTCTTTTAACTTATTCTACACACGCATAGAAGAGGCTCATGCAAATTTTGGCAGTATTAAAATTGAAGGAAATCAATGGGAGCCAAAAGTTGAAGTATCAAATAATGAAAGTGGAGACTTTTCGTATGACGGTCTGGAAATGATCATAGATCAGAATACCATCTTTACAGATAATAAAGCTTTAGATCAAATAGAAAATAGTGATGTTATAAGTGAACATGTAGTACATGAGGATCCTTTAGTAAAATCAAATGCCACAAATAccagaaatagaaaaaaattaaaaaatgctgCTACAACAAAGTCAAAAAAATCCAAAGACCAGAatgtaaaagaaacaaaaattaaaagagaGCCGGAAAAAGATGCTTTTAATGGTGATGATTCTGATGGTattaatgataatgatgatgaagatACCGATTCTGAACCAGACAAAAATTCCGAAATAGAAAATAACGACTGTGAACCACATAAAAATTCGTCAGAAATTAAAGgtagaaataagaaaaatgatCAATTTATAGCGGaacactttaaaaaaatgttttgtgatCTTTGCGGCATACCATTTGAAAGCTTTCTCATCATGCAGAAACACTTTGAAACGGAACATAATCGAAAAGGTTATCTGGTGTGTTGCGATAAAAAATTCTTTCAACGCTATCGTTTAGTTGACCATTTACAAGTTCACTTCAATCCAGATCATTTTAAATGTAAGCACTGTGGTAAAGTTCTATCAAATTCAGATAATTTTCAAAAGCATATGCTGCGTCTACACCGGCCGAAAGGTGTTAATTTGACACATTGCTGTGAGATCTGTGGAAAGTCATTTATGAAAGCCTCATTATTGCGCTACCATAAATTGCAACATTTGCCTGAAGAGGAAAAGAAGTTTCCCTGTAAACAATGTGGAAAATTATATCCCTCTGCTAACCACTTAAATATACACACCGAGGCggtacatttaaaaaaattcgtgAAAATATGTTATATTTGTGGTAAATCTATAGTTACAAGTGCCGAATACAAAATACATATGGACAAACACGAGGGCATACCGCCACCGTCTATAAGTTGTGATATCTGTGGTTTGCTATTGACCAGCGAAAGAGGTTTAAAACGTCACAAAGACAATCAACATCCAGTGGGCGGCAAACAAGATCATCCCTGTCCGGTGTGTCACAAAATATCACCAACAAGGAAGGCTTTACTGAAACATGTTAGTACGATGCATAAAAAAGGTTACGATCACAAATGCAACATTTGTGAAAAGGCTTTCAAGAGGGCAGAAGCATTACGGGAACATATGGCTTCACATACCGGAACACCCTTATATACGTGTACTTGGTGTCCCAAGACTTTTTATTCGAATGGCAATATGCATGCCCATCGCAAAAGAATTACCGATTATtcgtatacatatttttttcttgtttacaaatttttggaaaatgttatttttaataaatttcttaataaaataatggAATCCTGTTTATTGtgtttagaaataaataaagatattttggaCTCCATAAAGGCAAACTCATCACAATGGCAAGAGCTGGATATGGGAAAAGTGATAGAGAAACATTTTTGGCCAATGAacaatatacaaacaaattcCTGGATATGTTTGTCCTGCTGGCAAGAGGTAAACGATTTTCACAAATTCTATATGCGTGTGGAAGAGGCTCATatgaattttggaaaaattaaagtGGAGGATGTTGGTGTATTAACAACGGTGGAATGCAAAGAGGAATTaacaatacaaaaaacaaaaataaaaactaccaCTGAAGAGGCGGATAAAGATAATATTGCATTTTGTTTCCTAGAACCAGAGATACTGATAGACCAACCTCAGCCACAGGATCTGGCGGAACCAGAAATACTTATAGATCCACCACCACCAGCGCCCGATTTGGAGGATAACAAAGAAACTGCAATAACACAGCCCTTAGATGAGCTGGACTTGGATGATATGCCCTTAAAACAGGCTTGTAAACGTTTAAGATTAGAAaatcaaataacaaataaagatCCTCTAGAGAAATCTAAAAAATCGAAAGTTAACAACAAGTCcaagaataaaaagaaaactactaAAGCCAAAGCTACTGCAGAGACAAAAACATCAGAAGAAACCCCAGCAGAAGAATCACAAGTGAAAGAAGAACCTCTAGATACAAATGATAATCATGATTCAGATAGCCTTAGTGATAATGACAACGATGCCGGCGATGCCAATTATCAGCCGGAAAAGGATTCTGCGGAAACTGTGGAAAGTAAAAGGCGCAAAGCTTACAGTAAACACCGCACAAATCGCAAAGAAAATGATCAATTTATAGCCGAACATTTTAAGCAAATGTTCTGTGATCTTTGCCAGGTACCGTTTGAAGACTTTCCCGCCATGCAGAAACATTTTACCGAAAATCACAAACAACGAGGCTATGTTGTTTGCTGTAAACGAAAGTTTTTCGATCGTACCCGTTTGGTCGATCATCTTCATTGTCACTTAAATCCCGATCATTTTAAGTGCAATGAATGCGGCAAAGCCATGTCTGATCGCATCAGTTTTGACAGTCACATGTTGCGTGTGCACCGAGCCAGTGAGGTGGTTAAGCAACATTGCTGTGATGTATGCGGTAAATCTTTTACGGAAGCTTATGTCCTTAGGATACATAAATTAACTCATTTGCCGGAAGAGGAAAAGAAATTTCCCTGCAGTGATTGTGGCAAAAATTATGGCAGTCCTTATCTATTGAATCAACATCGACAAGCGGTACATCTTAAACGTTTCGTTAAAATTTGCTATATATGCGGCAAAGCTATTAACTCCAGTGCTGAATTTAAAATACACATGAATAAGCATGAAGGCATACCCGCTCCCGTTATAAATTGTGACGTATGTGGCTTACGTCTAACTAGTGAACGTGGTCTAAAGCTGCACAAAGAATCCCAACATCCAATAGGGGGGAAACAGGAACATCACTGCCCTATTTGTCCAAAAATATCACCCACCCTAAAGGCACTTAAAAAGCATATAAATACTATGCACGAAAAGGGCTACGATCACAAGTGCAGTATTTGtgaaaaagctttcaaaagatCTGAAGCTTTGAAGGAACATATGGCCACACATACTGGCACTACTTTATACACTTGCCCCTGGTGTCCGAAAACCTTTAATTCCAATGGCAATATGCACGCTCATCGCAAGAAGATACATCCAAAAGAATGGGAAGAaacaaaactgttaaaatattcgggaaatataccaccagaaatttaa
- Protein Sequence
- MDSCLLCLELNNNLVDFIETNSTRWQELNITKILEKHFWPIDTMYSCSKMCLSCWKQLEDFNNFYTRIEEAHENFGKIQIKEDKISCNESEPFSFACLEQEMVKDHNTVLPDNNVYEQVEDNCDISEDLTNEDQLLESNFTNSSNKADQNKEQAKINANPNDSSNSIDMDSSYNNDTDSDYEPDTNSSENVKDEVNNKKKDIFIKKHFKQILCDLCATPLENFSSMRKHFRNVHKQRAYLTCCNIRFYSKSTFVDHLHIHLNPDYFKCQHCDKVLAYRQSFEKHMLIRHRSKSRQKVKHLNSEGDQKHHTEKHPVGGKQDHPYTVSGRVLRNHTKISHEEEIVKDQNSLVTDNKVSNHVENNCDINEHVVNKDPLEEANLTNSSNREITKTTTQTNSKEDQNNEEEEINIESCDSNNSNSLNNKDKAAANESNQSASKSVKYKDVNKKIDKFIAKHFKRMFCNLCNMPFESFTSMKQHYLKVHKQRCFLVCCNKKFYDKCRFVDHLHTHLNPDHFKCPHCDKVLSNRESLEKHTLRKHTTKGVNQKNHKKVSKHLGNNCDINEDKVNRDPLANKDPLEITKTPTQRNTKEQNNEANMNPETYDSSNLPNSNSNNNMYKNTAYKQHTNGLKAISKKNEKFIAENLKQILCSLCNIPFKKFGNLMTHFQKVHKQSGYIVCCNKKFFDKPRLVDHLHTHLNPDHFKCPHCDKVLSDRMNLEIHMLHKHRPEGVKLKYTCETCGKSFANTTYLRKHKMCHLPQEEKKFRCAKCGKHYAASYRLKKHREECMVYRKKCHICGNTFTSSGGYKTHMNKHVTPPTIINCDICGIRLASKQGLQLHKETLHPVGGRQDHPCPVCHKMLSSKRALRHHNEIMHGKGYDYKCNICEKGFKRLLDLKDHCVIHTENPKCSWCPLTFKSRVSMYTHRKKMHPKEWKESKLEKYSGNLPTALAKVISPYLEDFIETNSTQWQELNVTKVLQKHFWPMKLSACSWMCSSCWKQLESFNLFYTRIEEAHANFGSIKIEGNQWEPKVEVSNNESGDFSYDGLEMIIDQNTIFTDNKALDQIENSDVISEHVVHEDPLVKSNATNTRNRKKLKNAATTKSKKSKDQNVKETKIKREPEKDAFNGDDSDGINDNDDEDTDSEPDKNSEIENNDCEPHKNSSEIKGRNKKNDQFIAEHFKKMFCDLCGIPFESFLIMQKHFETEHNRKGYLVCCDKKFFQRYRLVDHLQVHFNPDHFKCKHCGKVLSNSDNFQKHMLRLHRPKGVNLTHCCEICGKSFMKASLLRYHKLQHLPEEEKKFPCKQCGKLYPSANHLNIHTEAVHLKKFVKICYICGKSIVTSAEYKIHMDKHEGIPPPSISCDICGLLLTSERGLKRHKDNQHPVGGKQDHPCPVCHKISPTRKALLKHVSTMHKKGYDHKCNICEKAFKRAEALREHMASHTGTPLYTCTWCPKTFYSNGNMHAHRKRITDYSYTYFFLVYKFLENVIFNKFLNKIMESCLLCLEINKDILDSIKANSSQWQELDMGKVIEKHFWPMNNIQTNSWICLSCWQEVNDFHKFYMRVEEAHMNFGKIKVEDVGVLTTVECKEELTIQKTKIKTTTEEADKDNIAFCFLEPEILIDQPQPQDLAEPEILIDPPPPAPDLEDNKETAITQPLDELDLDDMPLKQACKRLRLENQITNKDPLEKSKKSKVNNKSKNKKKTTKAKATAETKTSEETPAEESQVKEEPLDTNDNHDSDSLSDNDNDAGDANYQPEKDSAETVESKRRKAYSKHRTNRKENDQFIAEHFKQMFCDLCQVPFEDFPAMQKHFTENHKQRGYVVCCKRKFFDRTRLVDHLHCHLNPDHFKCNECGKAMSDRISFDSHMLRVHRASEVVKQHCCDVCGKSFTEAYVLRIHKLTHLPEEEKKFPCSDCGKNYGSPYLLNQHRQAVHLKRFVKICYICGKAINSSAEFKIHMNKHEGIPAPVINCDVCGLRLTSERGLKLHKESQHPIGGKQEHHCPICPKISPTLKALKKHINTMHEKGYDHKCSICEKAFKRSEALKEHMATHTGTTLYTCPWCPKTFNSNGNMHAHRKKIHPKEWEETKLLKYSGNIPPEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -