Lser008417.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lucilia sericata
Gene Symbol
-
Assembly
GCA_015586225.1
Location
NW:23718-33766[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 8.5e-05 0.004 17.2 4.9 1 23 180 202 180 202 0.98
2 28 0.0018 0.085 13.0 1.8 1 21 208 228 208 229 0.92
3 28 1.1e-05 0.00054 20.0 3.9 1 23 318 341 318 341 0.97
4 28 5.9e-05 0.0027 17.7 3.0 1 23 415 437 415 437 0.99
5 28 0.018 0.82 10.0 4.0 1 23 443 465 443 466 0.94
6 28 0.01 0.49 10.7 0.3 1 23 487 510 487 510 0.96
7 28 2.3e-05 0.0011 19.0 2.6 1 23 516 538 516 538 0.98
8 28 4.5e-06 0.00021 21.3 2.4 1 23 544 566 544 566 0.99
9 28 2.7e-07 1.2e-05 25.1 1.8 1 23 572 594 572 594 0.96
10 28 0.017 0.81 10.0 4.1 1 23 600 622 600 622 0.97
11 28 0.0021 0.096 12.9 2.2 1 23 628 650 628 650 0.96
12 28 1.4e-06 6.4e-05 22.9 0.4 1 23 656 678 656 678 0.99
13 28 3.2e-06 0.00015 21.7 1.7 1 23 684 706 684 706 0.99
14 28 0.018 0.84 9.9 0.1 1 19 712 730 712 731 0.97
15 28 0.0016 0.074 13.3 1.5 1 23 908 931 908 931 0.93
16 28 3.3 1.6e+02 2.8 0.6 1 19 943 961 943 961 0.89
17 28 0.0016 0.073 13.3 1.5 3 23 1121 1142 1119 1142 0.92
18 28 0.0013 0.059 13.5 5.6 2 23 1393 1414 1392 1414 0.96
19 28 0.008 0.37 11.0 3.5 1 23 1420 1443 1420 1443 0.95
20 28 1.2 58 4.1 0.3 1 19 1455 1473 1455 1473 0.88
21 28 0.00029 0.014 15.6 0.5 1 23 1520 1542 1520 1542 0.98
22 28 0.0051 0.24 11.6 0.4 2 23 1549 1570 1548 1570 0.93
23 28 0.00032 0.015 15.4 1.2 1 23 1576 1598 1576 1598 0.94
24 28 0.00023 0.011 15.9 0.3 1 23 1603 1625 1603 1625 0.98
25 28 4.6e-07 2.2e-05 24.4 0.4 1 23 1631 1653 1631 1653 0.96
26 28 0.00089 0.041 14.0 3.3 1 23 1659 1681 1659 1681 0.95
27 28 7.9e-06 0.00037 20.5 0.2 1 23 1687 1709 1687 1709 0.98
28 28 0.0011 0.051 13.7 0.6 1 23 1715 1737 1715 1737 0.97

Sequence Information

Coding Sequence
ATGTTAATAATCGAAATATATGGACGGGTGTGTCgagtgtgtatgtgtaaatCGAATAATTTGCATAGTTTAAATGACAGCACCGAAGAGTGTCTAACCATGAATGAAATGTTGACGAAAACTGTCTCCGGCATACATGCCAACATCGAATTTCCAGTGCCTCAAGAAATTTGTGATTTATGCATGGAGCATTTACAGATCGCCTATAGATTCCAACAGCTGTGCATGAACACCAATgaacaaatgcaaaaaatatgGGAACAGTCGCAAAAGGCAGAGGTTAAGCAGCAGTCCTTAACAGGAGAAGCAGAGAATGAAGAAGATGAACCAGATCCCATTAAGGTGGAATATGATATGGTGGAGGGGGAGGAGCAAAAATTTGATAATGTTGAAATGTTAGAAGATTttgaaaatgtggaaaatggTCAGAAATGGGAAAATGATACAGATGAGGCTCCGGATAGGGATGAATTgGCCTGTCAAGATACTTCGTTAAAATCAAGTTCTTCATCTTCCGGCCGACTAGGCGCTACTCGCTTTTCCTGCTTAGAATGTAAGGAATCATTTGCAAAACATTCTCAATTAAAACGTCATCGTCGTAAACATGAGTCAACGCATCCCTTTGATTGTCAAAAGTGTACACAACGTTTTAAAAGTAAATCCCTGTTGGCAAAACATTCAAAAAGCTGTAAAAAAGACAAATGTCCAATGGTGGGTAAAAGTGATAGCGAGGATGAGGACGATGAGGATGATGACGATGTACCTCTAAGTACTTTAAAGAAAACAGAAAGTGATAATGAAAGTGACGTCTCcaaggaaaataataaaaagaaacaaaaatccttaaaaagtGAGAAAAAGACTCCTTACCATTGTTCCAAGTGCAATAGCTATTTCAAATATAGTTATCAGCAGACAAAACATCGTTGCAGTGATGAAGATAATGAAGGACATAAATGTGAAGTTTGTAACAAGACTTTTAGCacagaaaacatgttgaaaaaaCACATGAGTAGCAAACATAAagacaagaaaaacaaaacagagaAAAAGACTTTAGACAAAAGTAAAGTCTCCGATGAAGAGGATGGTGATGAGGAATTCAAACCCGAAGAAGTTGATATGGATCAAGACAATGATAATTGGAATGATCAAGgcgaatcctcagatgatagcGACTCTGATTATGCAGAGAAAGAAAAAACTGCAGCCAAGGCTAAACCAGAGCCCTTAGAAAATCAATACAAATGTAAGGAATGTTTTGCTTCATTCAGATTTGAAAAGCAACTTGCTAGGCATATGAAAAAACACACCGAAGCCCATCGTTTTATATGTGTTTTGTGTTGGGATCGTTTCAAGTATCCGCACATGCTGCAGAAACACATGCAAAAACATCACCCGGAGGATAATCCTAATCCCAAAGTGGCCGAGACCAAACCGGAAAATGTAGAAAAGACACACGTTTGCAGTTATTGTCCATCGGCCTATTCAAATGTGGGCGGTTTGGCTCAACATATGAGTAAGAAACATCCCGAAATTAAACCTTTCAAGTGTGACAAATGCGATAAGACATTTGTGGTCGAGGAACATTTGAAAATACACACAAATCGTCATATGggtattaaaaactttaaatgtgATCTTTGTGATAAATcATTTTCATTTAAGTTTGCCATGAAACAGCATATGCGCATACACACTGGAGATTTGAATTATTTGTGCACCTTGTGTGGCAAGAAATTCTATAGACCCAGTAATTTGCGCCAGCATATGCAACGTCATGGTGATGATAAGCCCTATACATGTCCTCACTGTCCCAAACGTTTCAAATGTCCCTCGGATCGTTATATACATTTAATGTCTCATCAAGAGGGTAAAAATCATGTTTGTCAGACTTGTGGCGCCAGATTTTCTCGAGTGGATACTTTACATCAGCATCAAATTTTACATACGGGAGAAAAACGCTATAAATGTGACCAATGTCCCATGGCCTTCCCCCgtttaatgaatttaaatcGTCACTTACGCACTCATACCGGTGAAAAACCCTACAAATGTAAATTTTGCGAAAAAGCCTATGCCCAGAGTaatgatttaaataaacatttacgcACCCATGTAGGAGAGAATACCTATATGTGTACCCAGTGTCCGGCTGCGTATAAATATCAAGCGGACTTAAGAAATCATGAATGGGAACATTATCGTCTACAAAAGGAGGCCGAACAAAAGGCTAAAGATGAAGCGACTGCCTTAAAAACGAAAGAAGAACAAACTGTTATGGAAgttaatgtataCAATAAGGAATTGGAAAATATCTGGAAACTACAGGAGCAGGAAAGATCCCAAGAAAACATTACAGAGGATGTTCCAGATGTTAAGGTAAAAGAAGAGTTGTCCAGAACCTCTAATAAAGGTCCCACAAAAGACATTGAAAAACCAAATGAAAGTGATGCGGAAGACAATAGCAGCTCGGAATATTCTTGGCCTATTCTAGAAGAATATGGTGTTGAAAGTTGCACTGATATAAGTTCCACACAAGCCTCTGAAGATACAAaacttgaaattgaaaattcaaatgaGAACGAAGACACTAGCAGCTCGGAGGATTCTTGGGCTTTTCAAGATAAAAATAATAGCGAAAGcagTAGCAGTGAAAATGATACAACAGCTTCACCACCAACTAAAAAAACCTTATTAACTAAACATTTGGCGAATGAATTTGCTTGTCATATGTGTAGCTATCGTTTTTCTACCGAAAGAAAACTAATGAACCACTTAATTTGGATACACAAATTTAAAGCCAGTAATTTACATAAGGGACACTATGACTGTGAATACTGttcctttaaattttatgaaaaaatggaATGGGCCAATCATGACTTTTGTCGTACATGTTTAAAACCTTcggaaaatatgcaaaatttaagcaatttattggaAAATGGGACCAAAATCGAAGATATCCTTAAACAAACTATACCCAGTTTTGAACTTAAAATGGTGGGACTCCAGCTGCCTGAAGAAATATGTAAATCGTGTctaaataaactaaaagaatctttcaattttatacaaatgtgTCAAGAAAACAATAAGGAATTGCAAAACTTATGGAAACTTCAGGAGCAAGAAATTAAGAGATCCCCTAAAGACTTTACCCAGAATATATTAGAAGTTAATTTTACACCAGAACTGAACGAAGAAATCTACTTTACTGTTAACCTCGATGTAGGTACTCCACAAGTCATTGAGGAAATTACAGTTGAAACTGAAAACCCCAATAAcagTAGCAGTGAAAATAATACAACTGTTTCATCAACAACTTCAAGCGAGGATACTGTCGATGAATTAGCTTGTCATATGTGTAGTTATCGTTTTTCTACTGAAAGAAATCTTAAATATCACTTAATAGGAACACACAAATTTAAAGCCAaaatggcATCGCTACCAATAGTTAGCGTTTGTCGCACTTGTTTAAAACATTCCAAAAATATGCCAAAATTAagtgatttatttgaaaatggcaaaaaaattgAAGATATCCTTAAACAAACCATACCAGAGTTTGTGGTAAAAATTGGGGGACTACCGTTGCCTGAAGAAATATGTAAACAGTGtcttaataaactaaaaaaatcccATGATTTTGTACAAACATATCATAAAAGCAATAAAGAATTGCAAAATATTTGGAAACAACAAATGGAGAATGTGGAAAGCTCCACTGAAGACATTCCCAaggatattttagaaattaattttaaaccaGAACTAGAAGAAGTAATCAGTTTTACTGTTACTACCGACATAAGTTCAACACAAGCCTTTGAAGAGATAAAACTTGAAATGGAACAACTGAATGAGAGTCAAAAGGAAAATATTAGCAACTCGGAGTTATATAGACCCTTTCAAGATAAAAATGATAACGAAAGccGTAACAGTGCTATAAATCCTGCACAAGCCTTTGAAGAGGCAAAACTTGAAATAGAAGAAGCACATGAGAGTCAAATGGAAAAAAACATCAGCAGCTCGGAGGAGTGTAGGCCTTTTCAGGATAAAAATAATGGTGAAAGcaGTAGCAGTGAGAATGATATTACAGATTCACCAACAActaaaaaaaccaaaagaatTTATCGCCAAAAAGCCACTACAAAACGTTCAAATACCAAAACATGTCTACATTGCAATGAAAAGTTTAGCAGCAGAACACATTTAACTAAACATTTGGATGTACACGATCCAGTCTATGAATTTGCTTGCCATTTGTGTAGCTATCGTTATTCTActgaaagaaaactaaaaaatcacttaaaatggACACACAAAATTAAAGCCAGACATTTAGATAAGGGACACTATGTCTGTGAATActgttcaattaaattttatgaaaaaatcgaATGGTCTAATCATGattgtatgaaaataaaacgGAATAGAAAATTATGTAGCTTTTATTTTGATGATTGCCCACGAAAAAACCAAAATGGTAAAGGAACCTATGATGAATTAAAAACTCACATGGATGTTAAATATCCAGCTGAGTTAGATTTCAAATGCCCTACTTGTGAACAAACTTTTTCTGAAGAAATCCAGCTGAAATATCATATTAATGAACATATGGGCTATAAGAAATTAACTTGTAATTTATGTGAGAAGActTTTATCACTAGCTTGGCCCTAAGAGATCATAAAGTTAATCATGCTGGTAAAGAACAATTTCTATGTCCCCACTGTGGCAAATCTTTTAAAACAGCGAATATTTTACGTTTGCATGTACTAAGACATGGTGAGAGAAAATACTCTTGTGCGGAATGTCCCATGAAGTTTTATGTTCAATCCAAACTGAACGAACATATGAGCGTACACACTAAACTAAAACCTTATGTTTGTAATATTTGCGATAAAACATTTGCTCGTCCTTCATCATTAAAAGCCCATAAGTTTATACATACCGGAAAAAGACCTTTCCTATGTGATTTATGTAATATAAGctTTGCCTTTAAACGTCACTTGAAGAGGCATAAAATCACTCATACTGGGGAAAAACCTTATGCCTGCACCTATTGTGATCGTGCTTATGCTTCCAGTGGTGATTTAGTTAAACACTTACGTTCGCATGTGGGTGAAAAAACCTATTTTTGTGATCAATGCCCCGAGGCTTTCAAATATTCCATTGAACTTAAGGATCATAAGCTTAaacattataaagaaaatttacaagaaaataacgattaa
Protein Sequence
MLIIEIYGRVCRVCMCKSNNLHSLNDSTEECLTMNEMLTKTVSGIHANIEFPVPQEICDLCMEHLQIAYRFQQLCMNTNEQMQKIWEQSQKAEVKQQSLTGEAENEEDEPDPIKVEYDMVEGEEQKFDNVEMLEDFENVENGQKWENDTDEAPDRDELACQDTSLKSSSSSSGRLGATRFSCLECKESFAKHSQLKRHRRKHESTHPFDCQKCTQRFKSKSLLAKHSKSCKKDKCPMVGKSDSEDEDDEDDDDVPLSTLKKTESDNESDVSKENNKKKQKSLKSEKKTPYHCSKCNSYFKYSYQQTKHRCSDEDNEGHKCEVCNKTFSTENMLKKHMSSKHKDKKNKTEKKTLDKSKVSDEEDGDEEFKPEEVDMDQDNDNWNDQGESSDDSDSDYAEKEKTAAKAKPEPLENQYKCKECFASFRFEKQLARHMKKHTEAHRFICVLCWDRFKYPHMLQKHMQKHHPEDNPNPKVAETKPENVEKTHVCSYCPSAYSNVGGLAQHMSKKHPEIKPFKCDKCDKTFVVEEHLKIHTNRHMGIKNFKCDLCDKSFSFKFAMKQHMRIHTGDLNYLCTLCGKKFYRPSNLRQHMQRHGDDKPYTCPHCPKRFKCPSDRYIHLMSHQEGKNHVCQTCGARFSRVDTLHQHQILHTGEKRYKCDQCPMAFPRLMNLNRHLRTHTGEKPYKCKFCEKAYAQSNDLNKHLRTHVGENTYMCTQCPAAYKYQADLRNHEWEHYRLQKEAEQKAKDEATALKTKEEQTVMEVNVYNKELENIWKLQEQERSQENITEDVPDVKVKEELSRTSNKGPTKDIEKPNESDAEDNSSSEYSWPILEEYGVESCTDISSTQASEDTKLEIENSNENEDTSSSEDSWAFQDKNNSESSSSENDTTASPPTKKTLLTKHLANEFACHMCSYRFSTERKLMNHLIWIHKFKASNLHKGHYDCEYCSFKFYEKMEWANHDFCRTCLKPSENMQNLSNLLENGTKIEDILKQTIPSFELKMVGLQLPEEICKSCLNKLKESFNFIQMCQENNKELQNLWKLQEQEIKRSPKDFTQNILEVNFTPELNEEIYFTVNLDVGTPQVIEEITVETENPNNSSSENNTTVSSTTSSEDTVDELACHMCSYRFSTERNLKYHLIGTHKFKAKMASLPIVSVCRTCLKHSKNMPKLSDLFENGKKIEDILKQTIPEFVVKIGGLPLPEEICKQCLNKLKKSHDFVQTYHKSNKELQNIWKQQMENVESSTEDIPKDILEINFKPELEEVISFTVTTDISSTQAFEEIKLEMEQLNESQKENISNSELYRPFQDKNDNESRNSAINPAQAFEEAKLEIEEAHESQMEKNISSSEECRPFQDKNNGESSSSENDITDSPTTKKTKRIYRQKATTKRSNTKTCLHCNEKFSSRTHLTKHLDVHDPVYEFACHLCSYRYSTERKLKNHLKWTHKIKARHLDKGHYVCEYCSIKFYEKIEWSNHDCMKIKRNRKLCSFYFDDCPRKNQNGKGTYDELKTHMDVKYPAELDFKCPTCEQTFSEEIQLKYHINEHMGYKKLTCNLCEKTFITSLALRDHKVNHAGKEQFLCPHCGKSFKTANILRLHVLRHGERKYSCAECPMKFYVQSKLNEHMSVHTKLKPYVCNICDKTFARPSSLKAHKFIHTGKRPFLCDLCNISFAFKRHLKRHKITHTGEKPYACTYCDRAYASSGDLVKHLRSHVGEKTYFCDQCPEAFKYSIELKDHKLKHYKENLQENND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-