Lser002905.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- lola
- Assembly
- GCA_015586225.1
- Location
- NW:147689-154321[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-12 9e-09 34.6 0.0 4 45 418 459 415 459 0.91 2 2 2.8 4e+03 -2.7 0.9 4 20 556 571 556 571 0.86
Sequence Information
- Coding Sequence
- ATGGGTGGCCCACCAGCGCCTACCTCTTCGAATAACCCACCCGAAGGACAAACCTATTGTTTAAGATGGAATAATCACAAATCGAATTTGGTGGAGATACTAGATGCTCTCATTAAGGTGGAAAGTTATGTGGACTGTACTATTGTTGTGGATGATCAAGTACAGTTCAAGGCACATCGTGTTGTTTTGGCAGCCAATTCTCCCTATTTCCAATCGATTTTACAAGATTTACCCATGGATCATTGTAGCATTATATTTCCGGGTGTTAAGGCTTTTGAAATGCGCGCTTTATTGGAATATATGTATACGGGAGAGGTTAATGTTACCCAAAGTCAAATACCCAAAATAATGCGTATAGCTGAGGAATTGGAAGTAAAGGGTCTTTTTGATATGGCTGATTTGAAGGAGAAATTCAATAAACTAAGTGAGGAACATGCTGAAAGATCGGCTAGTAATCCTTATGCCAGTACATCGGCTCCCTCAAATCCCTATTCTTCGGTAACCACCACTTCTTCACCGCCAGCGGCTGTAGCACATAACAAATCTAGCTCTAAGGATTCAGACAACTATCGCCATAACTCCTCCTCCGTGATCTCTACCTCGACAAATATTTCTCCCTCGGCTGCTCCGTCCAGCAGTTCCTCACCGCCCTATAGTAGTTACAAATCTCCCTATACCAGTTTATATAACAAATCACCTGCGCCCGCTGCTAATCAAACCACCTCAACTGCCCAGCCTCAATCTACACAACAGACACCCAGTAATTTAACACCCACCTCAGAACGTTCTGCTCAATGGCCTTTGTCTCCTTCTGCCGCTGCCGCTGCTGCCATGTTGAGTTCGGTTTATGAATCGGCACCCGATATGAATCCCTtaaaacgtaaaaagttatCCTCTATGTCTAGCATGCTAATGAATCGTGATACTCCCATTTTACGCAATGTTTTGGCTCAAGCTAACCCAGCCGATTCCTCTCAACAATTGCCTTTATTGTTACCTAATGCGGGCACTAAAGCTGACAAATCCTCGGGCTCAGCGGATAAGAATTTAAGTGGTCATAATAATAATCATAGTTTTAATGGTTCGGATTACAGTGATAAGaAATACCATGATGAGCCTCATTCCCCCTTTACCGATCGTTCCTTTGAGGATGATGGTTTCGATCCCAAGGGCAGTAATTTCGGTGGCAATTTTACTAACAATGGCAATCAGAAACCCGAATGGAaacgttataaacaatatacccGCAGTGATATTATGTCCGCCATACAGTGTGTACGTGAAGGCATGAGCGCTTTACAGGCTTCACGCAAATTTGGTGTACCCTCACGCACTTTGTATGATAAGGTCAAGAAGTTGGGCATTACCACTGGCCGGCCCATGAATCGTACCATGAAACGTAGTCCCAGCAGTGTAGAGTCTTCAGCAGCCTTCCCTTATGCTCATGGTTATGGTCAAGCTTCAGCGGCTGCCGCTGCCATGCATGATGCTGCCATTAGAGAGGAACGTGAACTGAAAGAACATCATCGTAATAGTGAACATCATCATTTAGCACCCACTATACCACATCCGGCGGCGGCTCTCTTAGATCATGCTTTCCTCCAACAGGCTTTGGAAAATCGTGGAGGTGGTGATATTGCTGGAAGAGAAGCTTTACATGCCATGGCTTTGGCTGCTGCTGCTCATGCTGCTGCCAATCGTATGTCCACTAGCCCTGGACCCAATGGCAATGCTGTACGTTCTCCCAGTCCCTCTAATTTCGCTTTGAAATACAATAGCATGCGTAATGCCGAACAGGAACTAATGGAACGTCATGAATTGGaacgtgagagagaaagagaacgTGAATTTGTGGAAAGAGAAAGGGAACGAGAACGTGATCAAGATTTAGAACGTGAACGTaatgaagaagaagaagatgaTCATGTGGAAGATTTGTCGGTAGCACGCAAAGAGAATAGTAGTTCCCCGGTAGAACAAAGAGAAAGACCTGAAACCCCTTATTCGCCGGGAATAACAAATTCTGGAGATAATGATAAATCGGTTATAATCAGCACAAAATTACCTTCTACAGTTAGCTCGGAGGAAGCTTTTATCACTGAATCTAATCTCAAACGTGAGGTGGTAATAGATGATGTTAGAGCCGACTGA
- Protein Sequence
- MGGPPAPTSSNNPPEGQTYCLRWNNHKSNLVEILDALIKVESYVDCTIVVDDQVQFKAHRVVLAANSPYFQSILQDLPMDHCSIIFPGVKAFEMRALLEYMYTGEVNVTQSQIPKIMRIAEELEVKGLFDMADLKEKFNKLSEEHAERSASNPYASTSAPSNPYSSVTTTSSPPAAVAHNKSSSKDSDNYRHNSSSVISTSTNISPSAAPSSSSSPPYSSYKSPYTSLYNKSPAPAANQTTSTAQPQSTQQTPSNLTPTSERSAQWPLSPSAAAAAAMLSSVYESAPDMNPLKRKKLSSMSSMLMNRDTPILRNVLAQANPADSSQQLPLLLPNAGTKADKSSGSADKNLSGHNNNHSFNGSDYSDKKYHDEPHSPFTDRSFEDDGFDPKGSNFGGNFTNNGNQKPEWKRYKQYTRSDIMSAIQCVREGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTMKRSPSSVESSAAFPYAHGYGQASAAAAAMHDAAIREERELKEHHRNSEHHHLAPTIPHPAAALLDHAFLQQALENRGGGDIAGREALHAMALAAAAHAAANRMSTSPGPNGNAVRSPSPSNFALKYNSMRNAEQELMERHELEREREREREFVERERERERDQDLERERNEEEEDDHVEDLSVARKENSSSPVEQRERPETPYSPGITNSGDNDKSVIISTKLPSTVSSEEAFITESNLKREVVIDDVRAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00258994;
- 90% Identity
- iTF_00921502;
- 80% Identity
- iTF_00922204;