Lser003534.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- -
- Assembly
- GCA_015586225.1
- Location
- NW:3341-5985[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.1e-08 0.0001 21.6 0.0 8 39 405 436 402 441 0.87 2 4 2.4e-14 3.4e-11 42.4 0.0 5 44 456 495 453 496 0.93 3 4 0.012 17 4.9 0.0 27 38 525 536 521 542 0.88 4 4 2.5e-15 3.6e-12 45.5 0.0 4 41 564 601 564 603 0.92
Sequence Information
- Coding Sequence
- ATGAATAATTTAAAGTGGATGGGCCATTCGGCCACAATATTAgatatacataaaaatttacGAGCCGATCTGAAGAGTTGTGAAGTTACTCTGGTGGCTAAGGGACACTGTGTTAAGGCTCATCGTTTTGTTTTATCCTCCTGCAGTGATTTGCTACGTTGCCTGCTAACGGATGTGCCCATTGGCCAAGAATGTTGTGTAATGGTGCCCGATATAAAGGGTCACTTGCTAGACAATGTATTGGCATTTATATATTTGGGAGAATGTTCTCTGTCATCCACCAATTTATCGGAGTTTTTGGAAGCAATTAATATATTGGGCATTAAAAGTGCAATTAGTTTTGAGTGCAATACGAATGCTTTACAGACTGCGCAGAATTCCCAACAAAATAGTATTGCGCTGGATGGTACAAGCACTTCGATGGCACCGGCAAGTAGTACATCATTGGGTAGTAGTCGGCAAGTTGCAGTGTCAGCTGCAGTTGAGGCCACATTGCATCAGGAGGAAATAATTGAGACACAAAGTGTTATGCATACTGAAGCCAACACACCGACCACCAGCAATAGTGCCACTAATCCGGGCACAACTCGTGAACTGGATTTTTTGGATGTATATCATGAACCTCAACATAAAATTACATATTCTATAGAACATGTTCCCGGTTCAACGGCTGgtaatgaatatattttaaccGAAAACTCAGGCACCTTTACACTAACACACAGCGGCAAGTTGGAATCTACATCATCGCCGGCAGAATCTTCTAATATGGAAGTTACCGAAGATGAAAACTGTGAGTCTCATATTATAGAAGAATACAGTAGCGGTGATGAACCTTTAATACAAATTGGTGAAACAGCACAGGAACATCATGTTACCGTTGTACAACAGCCGACTCCACAGCAACATCATAATCAGACCAACACAATACCCATTTCCAGTACAGCGACAACTACCACCGCCATAATACAAGTAAAGCCAAAAATGAAATCACTTAAGCTAAAGCATCAACCAGCAACACAACAGATTATAACGAAAATAGAACAACTTTCGGAGGATACTCCGCCCGATGATCCCATCTCCATACTACAAACATCGAATGAAAGTTTTGCCCTGCTCAAAGATGCCAGCATGATGTCTACAAGTAATACTAGTCATGAGGAGTCAACTGATTTTTCCCTAAACAATTCAGGTCCTTCGGCCACCGAGTTGGCCTATCAGGCCATGATTAATGAAGGCATGTCCTTGCCAAAGGCTGCAGATAAATTTAATGTTTCGAAGGCTGAACTATGGCGTCGGGTGCGCAGCACGGGAGTAGAACAGCAAAACAAATCAATCAAACTAGATCCGGACAAGATAGATGTTATAGAACTAGCCAGCAAGGCGGTCATTAATGAGGGTCTCTCCCTGCAAAAAGCTGCCATACGCTATGACATTTCAAAAACTGTACTCTGGCGACGAGTACGCAAGCATCCACAATATATGAAGACTGCCAGGGAAAATCCCATCATAGCCAAGGCTTATGAACGTTTAAAGTCGGGTGAATCACTTAAGAGTATATCACAAGATCTCGATATACCCATGTCCACTTTGCATCGTCATAAAGTGCGTCTTTCACAAACAGGGCAATTACCAGATTTTGTAACCTGTAAGAAACGTGATAGCATGTCCAAAGATGATCTTAAGCTAAAACTAGCAAAAGCTGTGCATGCCTGCGTTCATGAGGGCATGTCACAAAATCATGCCGCCAATTTGTTTCAAATTTCCAAAAGTACTTTGTGGCGTCATTTGCAAAAACGTGTAGCCGAAGCTGAGGCCGCCGAGACAGAGTCAATGGGCGATGATGATGAAATTAAGCAGGAGGTGATACTTTCATAA
- Protein Sequence
- MNNLKWMGHSATILDIHKNLRADLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRCLLTDVPIGQECCVMVPDIKGHLLDNVLAFIYLGECSLSSTNLSEFLEAINILGIKSAISFECNTNALQTAQNSQQNSIALDGTSTSMAPASSTSLGSSRQVAVSAAVEATLHQEEIIETQSVMHTEANTPTTSNSATNPGTTRELDFLDVYHEPQHKITYSIEHVPGSTAGNEYILTENSGTFTLTHSGKLESTSSPAESSNMEVTEDENCESHIIEEYSSGDEPLIQIGETAQEHHVTVVQQPTPQQHHNQTNTIPISSTATTTTAIIQVKPKMKSLKLKHQPATQQIITKIEQLSEDTPPDDPISILQTSNESFALLKDASMMSTSNTSHEESTDFSLNNSGPSATELAYQAMINEGMSLPKAADKFNVSKAELWRRVRSTGVEQQNKSIKLDPDKIDVIELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIIAKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLAKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAETESMGDDDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_00921517; iTF_00921363; iTF_00922229;
- 80% Identity
- iTF_00922229;