Lcup007102.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- -
- Assembly
- GCA_001187945.1
- Location
- JRES01001467.1:706636-710305[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.1 75 3.8 0.7 2 23 153 175 152 175 0.88 2 10 9.2 6.1e+02 0.9 0.0 6 23 185 203 181 203 0.92 3 10 5.4e-06 0.00036 20.5 1.8 1 23 211 234 211 234 0.98 4 10 0.19 13 6.2 8.5 2 23 243 265 242 265 0.94 5 10 0.0024 0.16 12.2 0.4 2 23 397 419 396 419 0.94 6 10 2.8e-06 0.00019 21.4 2.8 1 23 452 475 452 475 0.94 7 10 0.044 2.9 8.2 1.4 2 22 533 553 532 555 0.87 8 10 8.3 5.5e+02 1.0 0.7 6 23 565 582 560 582 0.94 9 10 2.5e-05 0.0017 18.4 7.0 1 23 588 611 588 611 0.98 10 10 0.012 0.81 10.0 0.4 3 23 622 643 620 643 0.93
Sequence Information
- Coding Sequence
- atGTCTTCAGCCACATCCTGCCGTTTATGTAGCTTTAGCTGTGaagggtttaaaaatttatatgaagatAATGGTCAGAAAAGTGAAGTTTATGAAGTTGcagtcaaatattttaattcattgctCTTGAATTCTGGTGCAGAAACTTCTACTCCAAGCGTTATTTGTTTAGATTGCTGGCAACATATTAGCGATTTTCATAGCTTTCAACAATGGATCCTTAATGCTCAAATAGAACAAGAAGATGTAAAACTGGTTGTACATGAAGATGAACAATCAGTTTTAGAAACCAATGATGTAATGTCATCTATTGATATTATTGAATTTGATATAACTGATACAAGgagtaaaacaaaatcaaatggtTCATTCAAATCAGATGACATAGAGTATAAAGGAGAATTTTATAgtaaagatgatgatgatactATTATAGCTAAACTAAAGGGAATGTTGGAATGTTATAAATGCAAGGAtctattttcaagtttttctaCACTAGAAATACATTTTGAACAATTGCACCCGCTGGAACAATCTTGTGTCGTTTGTTGTGGAGAAATATTTGATGTTAAATGGAGGCTTGTTGAACACCTCGTTGTTGCTCATAATAAAATTGATGTAAATCCTTTTAAATGTGGAACGTGTAGTGCATCATTTTCACAATATGGCAACTTAAGGAGACATGTACGTAAAAAACATGCAGTTCAAACATTACTGAAATGGACCTGCAGATATTGCAACAAACTGTTTAGAAATCATTTACATTTTGAAAGacacaaacataaaatacatgCTTCGCAGGAAAAGaaagattttccaaaaaatttgtcacaaactgctaataaaattaaaaaacgaaaatatccAGAAGATTATGATGTAGATTGTGAACCGGAGAAAATTTCCTTAGTCAATACGGAGACAAAGGAAAATCAAACAACTACTAATCAGATGTatataaaagaagaaacaatTGATAGTAAgcatattgaaataaatttgccCTCAACTTCAATAGACTTTAATTCCACTGTTCAAATACAAATGCCTGCTTTAGATATTATTGatgtaaaaaaggaaaatttaacgGATAGTGAAATTGAAGAAGATTCAATTAATAAGAAATCTTATTCCAACATAGAAGAAGAACCAAATTTACCATCGACAAAGTTTAAGAGCAATTTAAAATGTCCCAAATGTAATATAACTGTAAAAAGTTACGACCAGTTAAATGGCCATTTCAATATACAACATCCGGAAGAACGTTGTTATATTAATTGTTGTGACATTACTTTATACGAGCAAGCTAGTATAGTTGAGTATTTGCAATTTCATGAAAATCCTAAAAGGTTTAAGTGCAACGATTGTGGCAAATGTTTTAAGAATAGCAAAGGTTTGGCTTCCCATAAGCTACAAGTTCATGCTGATAATAGAAGTGTTtatcatttacatttttgttattgcaaaaGAGCTAAAGAgcttcaaaaagaaaataaacagcaacaaatcGTATACGACACCTCGGTTTGTTGTCAacgtaaaaagaaaattttagaagatGATGCTCTCATTgcaaagtggaaaaaagttttaatttgcgAAATTTGTAAAACTACTTTCCCCTACTACTCTTTGATGCGGATGCATTTCTATCATAATCATCCGGGAGAAAAGTGTTACATATCATGTTGTCAACGCAAGATATCTCGAATTTCTGATGCTTTAGATCACATACGCTCTCATTTGGACCCGAATGTATATCGCTGTAAAATATGCAATACAACCTGCTCCAGCAAAAGCTGCTTAGCGAAACATATGCGTAATACCCACAACGATTACTTGCCAAAACATAAATGGGCTTGTGATGAGTGTGATAAAACGTTTGAAATACGTCAAATATTAACAAGACATAAAAATAGTTTCCATTCCaaacaagtttaa
- Protein Sequence
- MSSATSCRLCSFSCEGFKNLYEDNGQKSEVYEVAVKYFNSLLLNSGAETSTPSVICLDCWQHISDFHSFQQWILNAQIEQEDVKLVVHEDEQSVLETNDVMSSIDIIEFDITDTRSKTKSNGSFKSDDIEYKGEFYSKDDDDTIIAKLKGMLECYKCKDLFSSFSTLEIHFEQLHPLEQSCVVCCGEIFDVKWRLVEHLVVAHNKIDVNPFKCGTCSASFSQYGNLRRHVRKKHAVQTLLKWTCRYCNKLFRNHLHFERHKHKIHASQEKKDFPKNLSQTANKIKKRKYPEDYDVDCEPEKISLVNTETKENQTTTNQMYIKEETIDSKHIEINLPSTSIDFNSTVQIQMPALDIIDVKKENLTDSEIEEDSINKKSYSNIEEEPNLPSTKFKSNLKCPKCNITVKSYDQLNGHFNIQHPEERCYINCCDITLYEQASIVEYLQFHENPKRFKCNDCGKCFKNSKGLASHKLQVHADNRSVYHLHFCYCKRAKELQKENKQQQIVYDTSVCCQRKKKILEDDALIAKWKKVLICEICKTTFPYYSLMRMHFYHNHPGEKCYISCCQRKISRISDALDHIRSHLDPNVYRCKICNTTCSSKSCLAKHMRNTHNDYLPKHKWACDECDKTFEIRQILTRHKNSFHSKQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00922465;
- 90% Identity
- -
- 80% Identity
- -