Lcup013239.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- -
- Assembly
- GCA_001187945.1
- Location
- JRES01000890.1:704379-711823[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00097 0.065 13.4 1.0 1 23 120 142 120 142 0.98 2 14 4.5 3e+02 1.9 0.9 1 23 148 171 148 171 0.92 3 14 7.1e-07 4.8e-05 23.3 0.8 3 23 390 410 388 410 0.97 4 14 1.1 71 3.8 0.5 1 23 461 484 461 484 0.96 5 14 2.8 1.8e+02 2.5 2.8 2 23 548 569 547 569 0.93 6 14 0.0025 0.17 12.1 3.5 2 23 748 769 747 769 0.96 7 14 0.096 6.4 7.1 3.2 1 23 775 798 775 798 0.96 8 14 0.0098 0.65 10.3 0.5 1 23 869 892 869 892 0.97 9 14 1.3 84 3.6 3.9 1 21 1054 1074 1054 1075 0.89 10 14 0.016 1 9.6 8.5 1 23 1092 1114 1092 1114 0.98 11 14 0.00041 0.027 14.6 0.5 1 23 1119 1141 1119 1141 0.94 12 14 0.019 1.3 9.3 7.2 1 23 1147 1170 1147 1170 0.94 13 14 0.00044 0.029 14.5 0.5 1 22 1175 1198 1175 1199 0.89 14 14 0.45 30 5.0 4.6 1 19 1205 1223 1205 1228 0.89
Sequence Information
- Coding Sequence
- ATGGGTGACAAGAAAATCGTACAGGATTACACCTTGGTGTGTCGGACATGTCTGCAAGGAAATGTGGAATTGCTAAATTTAAGCGCGCTTATCAGTGATAATATACATGaggaaaatgcaaaaatatcttatttggaatgtttaaaaatgtgCATACAACTAGAGGAGACGCTGGACATAGAAATGCcgcaaaaaatttgtttagaatgtGCTTCGGCCTTGCAAGTTGCCTATTGGTTTATGAAAAATGCCAGTCAAGCCCAGGAGCTATTGAAACTGAAGTTGAGGGAAATTAAACGTAAAAAACAGCAAATTGAAATGGAGtTAGCGGCAGAAGAAGTTAAAAAACCTAAACGTTATCGTTGTAAAATTTGCAATGTAAAAGTGGAAACTAAAAGATCCCTTAAAGACCATGTTAAATTACATTTAGatattattgtttacaactgtcaaatgtgttcctttgaaagTCATAATCGCAATGGCTTGGCCGAACATTATATACAAGTTCATGGTATAGAAGCAACAAAGGAACAATTAAAACCTAAAACCAAGACATCAGCCTCCACCTCCTCCTCCTCCCATATAGCCTCTTCAACAGCCATTAATTGTAATCAGGAACAAATGATGGGTGCCatgaaaaatgaacattttcaattattacCAGAAGATAcggaacaacaacaaacttcttatgaaacttttaacacaaataCCACCTGCGATACAGGATCATTACAAATGTCGACAATTCTAACAACATCTCAACagaattttaatacttttaatgcTTTAGTGAGTGACCAGCTTAGCAATATTACAAATACTACTGATCTGGGCATAGCCAATGAATTTATGGTAATGCCTGATGGCAGTTTAGAAAAAGTCATGAACAAAGgagttgttatagaatatataaatacaCCTAATAATGCATCAAATATAACTTTGGATAATGGTTTAGTTTTAGACAATATAatacaaatgcaaaatataGATAATTCAGTTATAATGGAACCTCAAAATGATATTGGCCAAATGGATGTGGATGATTTGATTATAGAAGATCCAGGTGAAGTGTTAGAAGAAGCAGCGGaaccCATCCCTCCCCCTCTTGAAGAGGATATAATACCAGTCACCATTATAGAGCAGCCTAAAaagattatttgtaaaatttgtaccAAAGACTTTACAACAcaagaacaattaaaaaatcacATGTTAACGCACAATGAAATTCCCCACTTCTTTTGCGATCagtgtaaattttatacatttttcaaaatcgaTTTACATCAACACTATAAAAGCAAACATAATTTACAACCGACCAATAAACAATTGCAAcctaaaaacaaacagaaaaatccAAATGAATTCTATGCCTGTGATTTGTGCTTTTATGAAGCGGACAATAAGACGGATATTAAAACACATTATAAAGTTAAGCATAATATTGAAGCAaatgaaattcatttaaaaccGACCAAAGTGGAAAAACTCaattcgaaattgtcacctttaACTGCTAAGGCAAAAGCTGCTGGCATTGTAAGCAAAGCCACCACCACAGCAACaacatctaaaaattttaaaatacgtGTAAATGAAGAAACAACTCCCGATTATCCGAATGGCTTAAATTGTCGCAAATGTCATGAGGTATTCTATTGGCGTAATAAACTATACGAACATTATAAGTTGCATAATGCCGAAGAATCGGCTCTCAAGCAAGAGAAACAATATATCAAAGTGCAAAATAAGCCTACAACAGCAAATctatatcaaaacaaaacaaaaagctcTCCCAAAACACAAGCCATACAAACGCCATCGGTAACACCGGCAGTTATGGAAACCAACCAATCTCCCTCCTACTCTAGCTTAGATTCATTAACAGCCTTAAATGTCTCAACACCTAATAATACAACACTTAATGCTATAGCTCCTTTAACACCATCCTCCAGTTCAACTTATACCTTGCCTTCGGATGCCATACCACAAATAGTGGAAACAGAACaaactattgaaaatgatatggattttgattttaatggtgatgatgatgccTTGTTTGGTGActttgatgatgatgttgatgtcgaaaatgattctgatgATAATGATACAGAATTTCGTAATGTTTTACTAACATCCGATGATGATTTTGATGATATGTTAAAGGAACAGAATAGCCTAAACAGTGGACTAAGTACAATGCCATCTAATACTTCTCAATCATATTGTTCACACTGTCAAAAGTCTTTCTTAAGTCAATATCAATTTGAAAATCATATGTTTGTGCATAGAGGGCTGGCTCCTTATCGTTGTGAAATGTGTACAAATCTTTACAATACAAAACGTTGTTTGATACGTCACTATAAAGCGGTACATAAAAGTGTACCTACTCGTGATATGATTCAAGCTAAAGGTGATAAAGTATGTGAGGATAAAACTCCAGTGGAGCATTTAAAACTAGAAGAATCCACTTcTTTGATGTGTGCTAAATGTCCCTTTGAATCAGCAGAATTAGCAGaaatcaaatttcatttaaattctagtCATAATATAAGTGATGATTCATATATAATGAAAAAACTACCCTACGAATGTCCACGTTGTATACGTTCGTTTGCaagtaaagcaaaaattttaagacaTTTACAACGTAATCACAGTTCAATACCCATTAATCAAAATCAAATACGTTTCGAAAATAACGACAATACAATCTCAACAATGGAAATAGCAGCAACTGCAACAAGCACAACTTCTGCCATTATAACTAATCAGGCAAATATGATGAATACTACTGAAACTACAGAAACAAACGCAAGTTGCGgATTCAGTGACGTTTTCATTAAACAAGAAACTGAaccacagcagcagcaacaacaacaacagcaacagtacACCTTTACAGACAACAAATTGTCAATTGAAAATGCCATAACACCCAATATTTTTATGGCCAACTACCAAGACACCAACAGCTCAACAACATCTCTGGCTTATAATGAAACCTTTAACAACAGCATCGATAACTCACCCATTAACCAGCACTTGCCAGCAAGCTCCCTTTACACGGCCTCACCAAACACCCTAGACATTAAGCAGGAGGAAGAGGAGAAGCAGGAGTCTAAGTTTAatcaacttttatataaatgtaaaatatgctttacaaattgttataatCTCGAAACATTTAATGAACATAGCAAACGTATAGACTGTCGTAAATTAAGTCTCACTGGTCCCGGTGACAGAATGCTTTTCGAGTGTGAAATATGTCATTGTAATTATAAAACCATGTATTTATTGAAACATCATTTAAAACGTCATATAGGTAGAAAATTCCTTTGCGCCAATTGTcccaaaacatttataaataaaatagaattagaAGCCCACAAACATGTGCACAGCGGTGAGAGGCCACACAAATGTGATGCCTGTACAAAATCATTTCGTTATATACATCATCTGAAACGTCACAAGGATAGTGTACATTTTGGTAAACGACATGTCTGTACCATGCCGAATTGTGGTCGTAAATTTACTACTTTAGCTCAACTTAAAGTTCATATATGGACTCATAATGGCATAGTACCCTATAAGTGTCCATTTTGTCagcgtttatttaaaaagagattacttCTACGTGAGCattgtttaaaaacacacaATGTTAATTTGAGTGAAGAAGAAATGGCTGAAATATTTCGCAATAGTTTGGGTTATACAAATCCTCATGATTTTACGGTGACCATTGGTAATGGCAAAATGTTACGGCGTGGTGATTTAGAAACTATGGGTGCTTCTGGCGTTATTAAATCATCATTTAagtag
- Protein Sequence
- MGDKKIVQDYTLVCRTCLQGNVELLNLSALISDNIHEENAKISYLECLKMCIQLEETLDIEMPQKICLECASALQVAYWFMKNASQAQELLKLKLREIKRKKQQIEMELAAEEVKKPKRYRCKICNVKVETKRSLKDHVKLHLDIIVYNCQMCSFESHNRNGLAEHYIQVHGIEATKEQLKPKTKTSASTSSSSHIASSTAINCNQEQMMGAMKNEHFQLLPEDTEQQQTSYETFNTNTTCDTGSLQMSTILTTSQQNFNTFNALVSDQLSNITNTTDLGIANEFMVMPDGSLEKVMNKGVVIEYINTPNNASNITLDNGLVLDNIIQMQNIDNSVIMEPQNDIGQMDVDDLIIEDPGEVLEEAAEPIPPPLEEDIIPVTIIEQPKKIICKICTKDFTTQEQLKNHMLTHNEIPHFFCDQCKFYTFFKIDLHQHYKSKHNLQPTNKQLQPKNKQKNPNEFYACDLCFYEADNKTDIKTHYKVKHNIEANEIHLKPTKVEKLNSKLSPLTAKAKAAGIVSKATTTATTSKNFKIRVNEETTPDYPNGLNCRKCHEVFYWRNKLYEHYKLHNAEESALKQEKQYIKVQNKPTTANLYQNKTKSSPKTQAIQTPSVTPAVMETNQSPSYSSLDSLTALNVSTPNNTTLNAIAPLTPSSSSTYTLPSDAIPQIVETEQTIENDMDFDFNGDDDALFGDFDDDVDVENDSDDNDTEFRNVLLTSDDDFDDMLKEQNSLNSGLSTMPSNTSQSYCSHCQKSFLSQYQFENHMFVHRGLAPYRCEMCTNLYNTKRCLIRHYKAVHKSVPTRDMIQAKGDKVCEDKTPVEHLKLEESTSLMCAKCPFESAELAEIKFHLNSSHNISDDSYIMKKLPYECPRCIRSFASKAKILRHLQRNHSSIPINQNQIRFENNDNTISTMEIAATATSTTSAIITNQANMMNTTETTETNASCGFSDVFIKQETEPQQQQQQQQQQYTFTDNKLSIENAITPNIFMANYQDTNSSTTSLAYNETFNNSIDNSPINQHLPASSLYTASPNTLDIKQEEEEKQESKFNQLLYKCKICFTNCYNLETFNEHSKRIDCRKLSLTGPGDRMLFECEICHCNYKTMYLLKHHLKRHIGRKFLCANCPKTFINKIELEAHKHVHSGERPHKCDACTKSFRYIHHLKRHKDSVHFGKRHVCTMPNCGRKFTTLAQLKVHIWTHNGIVPYKCPFCQRLFKKRLLLREHCLKTHNVNLSEEEMAEIFRNSLGYTNPHDFTVTIGNGKMLRRGDLETMGASGVIKSSFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -