Lcup010939.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- Sry-delta
- Assembly
- GCA_001187945.1
- Location
- JRES01000378.1:617657-619192[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 6.1 4.1e+02 1.5 0.0 1 16 58 73 58 75 0.82 2 8 0.0023 0.16 12.2 0.5 2 23 197 219 196 219 0.93 3 8 4.1e-05 0.0027 17.7 0.2 1 23 224 246 224 246 0.98 4 8 2e-06 0.00013 21.9 0.9 2 23 253 274 253 274 0.97 5 8 0.00038 0.025 14.7 1.2 1 23 280 302 280 302 0.98 6 8 0.00012 0.0079 16.3 1.9 2 23 310 331 309 331 0.96 7 8 0.00015 0.0099 16.0 8.2 1 23 338 360 338 360 0.97 8 8 0.0058 0.39 11.0 0.1 2 23 405 427 405 427 0.93
Sequence Information
- Coding Sequence
- atggaAACCgtcattttatgttttctttgcGGAAATGATACCGTTAAACATAATCTCGATTTTTACAACATACAATCTGCCATTGTACCCGCCTCACAGAAGCCACTTCACGTTGTCCTTCAACATTTGGCAAATTGTatcaaatttaaactaatttttcaaaGCGAAACTTATATTTGTGCAGATTGTTTTAAGGAAATGTCCGATTATGATGATTTAATGTTAAATCTTCTTTCGTCGCAAAAACGTCTTACTGTTTTGTTGCGAAATGCCTTAATGGAGAAACCAGAAGAGGAATCCGAAGAACCCTCCACTCCAGTGGAAGATGTAAATGAGCAGTCTATGGATATAGAGTTGGAATTTGAAGATGATGAAGAGGAGGAAGATCCCAATCTTGTAGATGCTTTCAATCCAAATCTTGATACAAAAGAAGAATTAATTGAAATCGATGATGATGTTATTATAGAGGAAGAAACTGTTGATAATCAGAAGCTTAACCCTGGAATAAACAATCCCAAAATAGGCAGCAGTAGTAACTTAACTCAAGTGTCGGAAAATAGTGAAGCAAAACGCAAACGTAATAGTCTGGAGTGTGTTATTTGTGGCGTAATTTTAAAATCGAAATTTCTTCTGCAGAATCATATGAGCGAATGCCACAATGTTAAGCAATTTACATGTAAAATTTGTGGAGTATCCAGAAAAGATGAAGAATATCTTGAATTACATATGAATATACATGAAGGCAAGACAGAAAACGAATGTCGCTACTGTCCCAAGCGCTTTACTCGTCCGGTCAATACTTTAAGACACATGCGAATACATTGGGATAAGAAGAAGTTTCAATGTGAAAAATGTGGCGAAAGATTCTCTTTAGACAATATGCTCTACAATCATCGTTTGCGTCATGAAGCTGAAGAAAATCCACTTATTTGTGCAATTTGCAATCAATCTTTCAAATCACGCAAAACCTATACTCATCATCTACTCATACATCAGGAAAATCGTCCGCGACATCATTGCCATTTGTGTCCGAAATCATTTACCGAACGTTATACACTTAAAATGCATCTGAAAACACATTGGGGTGATAAATCGTCCGCAAGTCCCAGCAGTACGATTGTCAGTAGTAAAGCTTCTCCGGACGAGAAGGAAACAGATAACGAGGAGACTATTGGTATATTAGTGGAGAATGATAGCTACGATGGTGATAACACTTGTGTCATTTGTAATAAGAAGTACGATGCTAAGGAAGGCTTGGAACAGCATTTGCAAGATGTTCACGATGTAATTCTTAAataa
- Protein Sequence
- METVILCFLCGNDTVKHNLDFYNIQSAIVPASQKPLHVVLQHLANCIKFKLIFQSETYICADCFKEMSDYDDLMLNLLSSQKRLTVLLRNALMEKPEEESEEPSTPVEDVNEQSMDIELEFEDDEEEEDPNLVDAFNPNLDTKEELIEIDDDVIIEEETVDNQKLNPGINNPKIGSSSNLTQVSENSEAKRKRNSLECVICGVILKSKFLLQNHMSECHNVKQFTCKICGVSRKDEEYLELHMNIHEGKTENECRYCPKRFTRPVNTLRHMRIHWDKKKFQCEKCGERFSLDNMLYNHRLRHEAEENPLICAICNQSFKSRKTYTHHLLIHQENRPRHHCHLCPKSFTERYTLKMHLKTHWGDKSSASPSSTIVSSKASPDEKETDNEETIGILVENDSYDGDNTCVICNKKYDAKEGLEQHLQDVHDVILK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00259226;
- 90% Identity
- iTF_00922370;
- 80% Identity
- -