Basic Information

Insect: Lucilia cuprina
Gene Symbol: -
Assembly: GCA_001187945.1
Location: JRES01001143.1:749548-756256[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0016 0.1 12.8 0.3 1 21 1089 1109 1089 1113 0.92

2 8 0.00029 0.019 15.1 1.6 1 23 1595 1618 1595 1618 0.97

3 8 4.7e-06 0.00031 20.7 3.4 3 23 1646 1666 1645 1666 0.98

4 8 0.00016 0.011 15.9 1.0 1 23 1672 1694 1672 1694 0.99

5 8 1e-06 6.8e-05 22.8 1.2 1 23 1700 1722 1700 1722 0.99

6 8 0.018 1.2 9.4 2.4 1 23 1728 1750 1728 1750 0.97

7 8 4e-05 0.0027 17.8 0.1 2 23 1757 1778 1756 1778 0.96

8 8 0.0025 0.17 12.1 0.9 1 23 1784 1807 1784 1807 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0016	0.1	12.8	0.3	1	21	1089	1109	1089	1113	0.92
2	8	0.00029	0.019	15.1	1.6	1	23	1595	1618	1595	1618	0.97
3	8	4.7e-06	0.00031	20.7	3.4	3	23	1646	1666	1645	1666	0.98
4	8	0.00016	0.011	15.9	1.0	1	23	1672	1694	1672	1694	0.99
5	8	1e-06	6.8e-05	22.8	1.2	1	23	1700	1722	1700	1722	0.99
6	8	0.018	1.2	9.4	2.4	1	23	1728	1750	1728	1750	0.97
7	8	4e-05	0.0027	17.8	0.1	2	23	1757	1778	1756	1778	0.96
8	8	0.0025	0.17	12.1	0.9	1	23	1784	1807	1784	1807	0.97

Sequence Information

Coding Sequence: ATGGAAAGTGTTCTAATTCACAATAATATAGATGATAGGCCTAATGATAATATAGATCACTTAAAATGTGGCGAAGTTCTGACTTGGCAATGTGCTGGTGAATCGTATGCGGTGATATGTAAACTCTGTGAAGATCATCCTTTATGCCCACTCTCAGAATTTCCACAACACATGGAAATATGGCATACAGATTGGCAGCAGGATTTCGAAATAGATAAGGAGCCTAACGAAGATCTTCACAATACTAAAGACGACGGCGACGATGATGATAATGAAGaagatcaatttttttattatgaagatCACAATGATGATCATGCTTTATCATTTACCACTGAAGATAGTGGTTGTTTATTTGAGTCAGACgataattttcaacaaaatgaaAGTGTGTTAAATGTTAATCCAATAAACAATAATGGAGAAATTCTAGAACCATTTGAACAGGTATTAATAGcacaagaaaacaacaatagccCTAATGAAGATTCTATACCGATTAGAGAAGATCTTAATGACGCAGAAGAATGTTTAAACGAAGTAAACAAACAGGTAGCAGAGGTTTTAGCAGCTGTAAATGACAGTGAGCAGGAGCAAAggtcaaattttaatataaacaaaacattgaacaaaagaaaatgtaaacaaaaagaacattcTAATGAATTAGCAGAAAAAGAGAGAGATTTTGGAAATTTACCAAATATAAGAGAGAGtgaaagaaatgttttaaaagaaaatgataaTGTTGAGAAAGTAACAAAgtctagaaaaattttaaagaatattaaagaaattgaagAACATTTAGAAGAATTAAGTGAAAATGAAATAAGTGAAAAGGGAAATGCACAAATTACTGAAAAATATCAAGAATTTAACGTGAATGATAAAGAAATAGATGAAACTGATAgggaaataacaaaatttgaaagtGAAACAAgtgaaaatgaaacaaatttggtgaaaaatttacaaaaatttcatgaaCCTTTAAAATCTTGCAAGAgaactagaaaatttaaaataaatttaatagaaactaaaaaatcaacaaatcaactaaaagaaattagcaaaaatttaaagaaatcaaaagaaaatgaaaCCGAAATAAGTGAAATTGAAACaagtgattttgaaaattttgaaacaattagaaaaactaaaaaatctttaagaaattttaaagaaaatttaataaaccaaaaagatttaaaaggaaatttcaaagaaacacaaaaaccaAAAGATAATGAAACAGAAACAAGTGAAAATGaaacaataagaaattttgagcaaaaaactaaaaactctcgaagaaattttaaagaaatatcaaaaaaatcaaaaaatatcaaagaaaatataagaaaactcCGAAACACGCAGAAACTAATAGAAAATGAAAGAGAAACAAGTGAAAAGGAAACAGAACAAAGTGAAAATGAAACATTAACAAGTGAAAATGATACAAAAACTAGTGAAAATGAAAGCGAAACATCAAATGATCTCAATTACAgtagaaattctaaaaaattacaaattttcgaCAATTCCTTTCGAAATactcaagaaaattttaaaaatatacgaaatttttcaataaatttaagaaaaaatttgaaattggtACAAGAATTACAAGAAACGAAACAAAAAGTTGAAAGAAACCAAGAGAATTACGAacataatataataaacaagaGAAAACTTAGAGAAAATCAAGAGAATTCAAGACAAAAGGAACGAGAGGAAATGAAACAGTTGAAATCCATTGGCAGAGAAACAAATGAAAGTGgatgtttacaaaaatttagaaaagacCATAATTTAACACACAATGTTAGACAAAAATCTTGTAAAACTAGATGGAGCAAAAGAAATTTGAGAAACTGTTCCAGAGAGTTTTCCGAAGAGGAACAAGGGGGGAAAGGATTTAGAGATTTGTATAAAAAGGTAATTAAACTTCAAGAGAGCtttgaaaattatacaaaatcttTGCGATTTCCTGAAGCAAATGGCACACGAACtagaaaatccaaaattaaattaaacgaaGAGCCAATGATCGCGGAAAGTGATTTGAGCAATGAAGAGAGTGGTAGTACAGATTGTTCTAGAGAAACtaagagaaaatttcaaaattataaggaGCTAGATTTATGCCCCTTTGAAACATTACAACAAACTCAAAAACCGCTTAAAAACCCCATCAGACATGGACGCCGATCAAGTAAGAGAAGATTAAAAACATCAAATGAAGATCATACGCTTGCCAAGAGAACAAGAAGAGAAAGTTTCAGCGAAACATCGGACATTTCAGAAGAGATATCTCCTAACAACTCTGTAAAGGAAGGAgttaacaaaactataaaacagaCTTTGGTAACCcaattttttaagaatgaaaatgttaaaactaaaGCAACAGAAATTTCTGAAAACTCTGGACCAATTTCAATTAGCCCTACTGGCATAGATGTAAACGATACTTGCTCTCTTATTTCCCTTAATATTACACCAGACAACACTTCCAATAATGACAACTCTTCGTCAATATCCCCGTCTCCTTTACCTTCACCCATAACCGAGGAAGAACATTTCGAATTCAATGAATCCAAGAAAGAACAACTTAACAAACATCATATTGAAGATTTAATCAAACTCTATCAGGAACATCCCCGTCTGTGGGAAGAAGCTCATCCGGAATTCTGTGAACCTGAACTTTGTCGCAAATCCTGGCAACAGATCACCCAACAATGGAATGCTATATGTCAACGTAAATTCACGACCGCTGAAGTACGCATACGTTTGGGTACGCTTTGTCAAAGATATGTACAGGAGAGAGAACGTCTTGCCTTGGAGGGAGAACTAGATGAGTTTACCAAATTTCCCCACTATGAACAAATGCAATTCCTGGAACAGCAAGAGTCTCTGCAAAAGAGAAGTGAACTGCAGGAGCAACAAAAtgagaaaatcttaaaaatttatcaactaTTTCCTCTGCTCTGGCATATCAACTCGTATAAAGTGCGCGAAAGTAAAGAGCGGGCCGAGGCCTATGAGAACATTAGTCAGTCCTTGAAATTGTCAGGTTTACACTTATCCTCGAAGGCGGTTCAGAAACGCATACGTTCGCTTAGGAAATGTTATCGTTTAGAGAAAATACGCTACCTTAATGCTCAAGTAGAGCAAACACCCTTTGAGTCCAACTTTTGCCATTATGAGAGAATGAAGTTTTTGCATCAGCACATCGAACCATTTAGGTGTCGCATATGTGGTCGAATATTTGCGAATTTGTCACGATTCCGTGAGCATTTGGAAGAGGAAAATCATGGTGATGTACTGCAGGAGGACAGTGAAAGTGAGCAGGACGAAGAGGAGAAGGGAAAAGACAAGATTGGCGATATATTAGAattggaaaattcaaaagaatcaACCGCTTCTGTTCCCTCGGAACTAGGAATATCTTCAGAAGTTTTACAAACGTTTACTCCCTTGCCCACTAGCCCATTACCTAATGAGGAACTTGTCACTAGTGTAAACCTGGATACGGCACCCATAATTCAGGAAGTCATTATTTTTCCTCCACCCACTCCCGTCGCATCCTTTGTAAAATCTTTACATCTGGAAAATCAACTCATGGAAGAAATTATGGAAAATGTTAGTAATGACGATAGTTTCACACAAAAATCTTTGGACCAGTTCATAAACTCGATTACCAGTTCAGAAGAATTGTGTCCAAATAGTGTTATCATAGAAGAAACTTTATCTTGTGATGTTATGGATATTGGAATAGAGAATTCGAgccataataatattataatccAGGAACCTGTGGCCTCTGTTATTTTCGAAGAAGAAATTCCAATAGTTTTCAATGAAACCCTGAAGGAAATGGAACAATCTTTTGAGGTTTCCAGTACAATaacaaattctaaagaaaagttatcaGGATCTCAGGAAACACCGCTAGATTCCACAGAAACTTCCTCCTCACCCGCTCCGCTTGTGGTTAATGTTCAATGTGATGATTTTTCTCTCGATCTCAAGTTAAACTCACCGCCTTATGAAATTCTCAATCCTAACTCAAACGATTCTGATAACGAATTGTACTCCTCAGGTGATATATCCACCCTGCCGCTGCCCGATCTGGAAATCCATAAAATGATTGCTTTATATCGTAAATATCCACAAATTTGGAATCCTAATCATTTGGATTATAATTCACGCAATCTAAGACGTCAGGCCTGGTGTCAACTTACTAAAGAATTCAGCGCGGCAGTAGGTAAACAGTTCTCTTGGCGTACTTTACATCGGAAGTTGACAGATTATGCTAAATACTATAAGAAACTAATAACGGAGCAGGAGAACTATGATAAATTGGAGAATAAGTGGGCTTTCTATGAGGATTTCAAGTTTTTGGATGATGTGCTCGTGGTCCATGATGAGCTCCAACGTACTGTTCATCATAGggataataatttcaaaatcattaagATCTACGAAACCCTGCCTCAATTGTGGAACATAAAACATCCTGAGTATAGTAAACGGTCCAGCAAACAGCGGCTCATCGAACTAATGTGTAATCGTTTGCAAGAGGAATATAATGTCCAACTGACAACAGAACGTTTAAAGAATCGTCTTATAGAACTTCGAGCCCAATATAGAGCAGCCAAAAAGCAACgtttaaaatgtgaaaagaATCAACAAACATTTACAACCGATTTAGAGTTTTATGATGCTTTCAAGTTTCTCGATCCCCACATAGATCCCTTTATATGTGAGAAATGCgaaaaagaatttaagaaattaaccGATTACAACCAACACATAAAAAAGGAACATGAAAAGTCATTGAAAGTGAAACCAGCTCCATTAACTCTGTTACCTCTGGAACCGGGTGTagatacaaatttacaaaatatttgtcaCATCTGCGGCATTAAGTTTAGCACCCGCAGTAATCTAGTGCATCATGTTCGCCGTCATGAGGGTGTACGCAACTATGAATGCCCCATGTGTCCGAAAAAGTTTTTTGCCTCCCATCCGCTTAAATTACACATTAGGTCGCACACCAAAGAATGTCCCTATACATGTGAAAAATGTGGCATGTCTTTTACTAGTGCCAGTAAATTGAATCAACATGTCAAGAGACATTTAGGTCGAAAAGACTATCAATGTGATTATTGTCCTAAACGTTTTTTTACGGGCTTTGAAAAGGATCGTCACGAAAGACgacatttaaatattagagATAAAGTGTGTCCGATTTGTGGAAAAACATTTGTAAAGGGTTCTTCTTATTATGCACACATGATGCTGCACAGTGATACGAAACGCTTTGAATGTGATGTGTGTGAAATGAAATTTGCCCAATATGCGGGActgtataaacataaaaagaaatatcatcCATCGTAA
Protein Sequence: MESVLIHNNIDDRPNDNIDHLKCGEVLTWQCAGESYAVICKLCEDHPLCPLSEFPQHMEIWHTDWQQDFEIDKEPNEDLHNTKDDGDDDDNEEDQFFYYEDHNDDHALSFTTEDSGCLFESDDNFQQNESVLNVNPINNNGEILEPFEQVLIAQENNNSPNEDSIPIREDLNDAEECLNEVNKQVAEVLAAVNDSEQEQRSNFNINKTLNKRKCKQKEHSNELAEKERDFGNLPNIRESERNVLKENDNVEKVTKSRKILKNIKEIEEHLEELSENEISEKGNAQITEKYQEFNVNDKEIDETDREITKFESETSENETNLVKNLQKFHEPLKSCKRTRKFKINLIETKKSTNQLKEISKNLKKSKENETEISEIETSDFENFETIRKTKKSLRNFKENLINQKDLKGNFKETQKPKDNETETSENETIRNFEQKTKNSRRNFKEISKKSKNIKENIRKLRNTQKLIENERETSEKETEQSENETLTSENDTKTSENESETSNDLNYSRNSKKLQIFDNSFRNTQENFKNIRNFSINLRKNLKLVQELQETKQKVERNQENYEHNIINKRKLRENQENSRQKEREEMKQLKSIGRETNESGCLQKFRKDHNLTHNVRQKSCKTRWSKRNLRNCSREFSEEEQGGKGFRDLYKKVIKLQESFENYTKSLRFPEANGTRTRKSKIKLNEEPMIAESDLSNEESGSTDCSRETKRKFQNYKELDLCPFETLQQTQKPLKNPIRHGRRSSKRRLKTSNEDHTLAKRTRRESFSETSDISEEISPNNSVKEGVNKTIKQTLVTQFFKNENVKTKATEISENSGPISISPTGIDVNDTCSLISLNITPDNTSNNDNSSSISPSPLPSPITEEEHFEFNESKKEQLNKHHIEDLIKLYQEHPRLWEEAHPEFCEPELCRKSWQQITQQWNAICQRKFTTAEVRIRLGTLCQRYVQERERLALEGELDEFTKFPHYEQMQFLEQQESLQKRSELQEQQNEKILKIYQLFPLLWHINSYKVRESKERAEAYENISQSLKLSGLHLSSKAVQKRIRSLRKCYRLEKIRYLNAQVEQTPFESNFCHYERMKFLHQHIEPFRCRICGRIFANLSRFREHLEEENHGDVLQEDSESEQDEEEKGKDKIGDILELENSKESTASVPSELGISSEVLQTFTPLPTSPLPNEELVTSVNLDTAPIIQEVIIFPPPTPVASFVKSLHLENQLMEEIMENVSNDDSFTQKSLDQFINSITSSEELCPNSVIIEETLSCDVMDIGIENSSHNNIIIQEPVASVIFEEEIPIVFNETLKEMEQSFEVSSTITNSKEKLSGSQETPLDSTETSSSPAPLVVNVQCDDFSLDLKLNSPPYEILNPNSNDSDNELYSSGDISTLPLPDLEIHKMIALYRKYPQIWNPNHLDYNSRNLRRQAWCQLTKEFSAAVGKQFSWRTLHRKLTDYAKYYKKLITEQENYDKLENKWAFYEDFKFLDDVLVVHDELQRTVHHRDNNFKIIKIYETLPQLWNIKHPEYSKRSSKQRLIELMCNRLQEEYNVQLTTERLKNRLIELRAQYRAAKKQRLKCEKNQQTFTTDLEFYDAFKFLDPHIDPFICEKCEKEFKKLTDYNQHIKKEHEKSLKVKPAPLTLLPLEPGVDTNLQNICHICGIKFSTRSNLVHHVRRHEGVRNYECPMCPKKFFASHPLKLHIRSHTKECPYTCEKCGMSFTSASKLNQHVKRHLGRKDYQCDYCPKRFFTGFEKDRHERRHLNIRDKVCPICGKTFVKGSSYYAHMMLHSDTKRFECDVCEMKFAQYAGLYKHKKKYHPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -