Basic Information

Insect: Lucilia cuprina
Gene Symbol: salm
Assembly: GCA_001187945.1
Location: JRES01000668.1:190060-252073[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.1e-06 0.00027 20.9 1.9 1 23 362 384 362 384 0.98

2 8 3.3e-06 0.00022 21.2 1.1 1 23 390 412 390 412 0.98

3 8 2 1.4e+02 3.0 2.4 5 23 671 689 668 689 0.84

4 8 3.1e-08 2e-06 27.6 0.2 1 23 695 717 695 717 0.98

5 8 0.00092 0.061 13.5 0.9 1 23 727 749 727 749 0.98

6 8 0.011 0.75 10.1 0.8 1 23 938 961 938 961 0.93

7 8 5.7e-06 0.00038 20.4 5.0 1 23 1204 1226 1204 1226 0.96

8 8 7.9e-08 5.3e-06 26.3 0.7 1 23 1232 1254 1232 1254 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.1e-06	0.00027	20.9	1.9	1	23	362	384	362	384	0.98
2	8	3.3e-06	0.00022	21.2	1.1	1	23	390	412	390	412	0.98
3	8	2	1.4e+02	3.0	2.4	5	23	671	689	668	689	0.84
4	8	3.1e-08	2e-06	27.6	0.2	1	23	695	717	695	717	0.98
5	8	0.00092	0.061	13.5	0.9	1	23	727	749	727	749	0.98
6	8	0.011	0.75	10.1	0.8	1	23	938	961	938	961	0.93
7	8	5.7e-06	0.00038	20.4	5.0	1	23	1204	1226	1204	1226	0.96
8	8	7.9e-08	5.3e-06	26.3	0.7	1	23	1232	1254	1232	1254	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATTTTTCGCAATCGTATTAATTACCGTGGAACACCTAGCAGCAACTCTCCGGGTAGTCCTCCAATATTAACCAAAGATTTAGAAGCTGACAGTAATAATAACgataatgacaacaacaacataatgtcTAGAAAAACTGAAAGTCCACAAGAAACCAGAGAAAGCAATAGCAAATCACCAGCAGTAGAGCATTCAAATAATAATGATGGTGTTGAAGAGCATGCAGATGATATCGAAGAGGGTGAAAGAATGGATCCTAAAGAGGATGATGAAATGGACAGAGATTTAACGatagaaaaacaacataaagaTGAAGCTCTGGATTTATCTGTGTTGCCACCAAATGGTTTACCCATCAAGGGTCATGTCTCCTTGGAAGCTTTACAGCACACCAAAGTAGCAGTAGCTCAATTTGCCGCATCAGCTTTAGCCCAGACACCCTATTTTGGTGAGGGATCCAATGATTTGACAACCATATTAAATGTACAACGTCAGCATTTAATGCAGTTGCAATTTATACAGCATTTACAAAGTCAATTGAAAAGAAGAGATCAGGTGAGAGAATGCAGTGAAGATGATGAGGGTCACGAAGAGGACGAAGAACAAGAGAGAGAAGATATTGGAGAAGACATGGAGGAAGAGGCGGATGAAGAAGGCCTTAATGAAGACTATCTACAGCAGGAAGAATTAGATTTAAGTCAAAGTAAAACTGGACTAAGAGAAAATAAAGAGGacgaaaagaaaaatggttTAGAGTCTAATACATTTTTAAGAGCAGAGAAACTAAAGACTGATGATAACGTTTTAAGTAAAAGTCCCAAAGAATCAGTGGATAAAGTGCAATCACCAAACTATCAGCCCTTATTAAGTGGCATCAGTTCTTCATTAGCTTCTACCATAATAACCAATCATGATCCCATACCCCCGCCTCACGAGCCCAATTGTTTGGAAATGTTGCAAAGACGTACCGAAGAAGTATTGGATTCGGCTTCTCAAAGTCTACATGCCTCTCAAATGCAGGAGGAATATGAGTATATACAAAAGGATGGCCAGGGACGtggagaaatatttaaacatcgTTGTAAATATTGCGGGAAAATATTTGGTTCATTTTCAGCCCTGCAAATTCATTTAAGATCACATACAGGTGAAAGACCCTTTGTGTGCAATGTATGTGGTAGTAAATTTACTACCAAAGGTAACCTAAAGGTTCATTATCAAAGACATACCCAAATATACCCGCCCATTTTAATGCCTCCCGGTGTAGGGCCACCTTTAGAAATGCCACCATCTATGAGAGAGCCTCTGGGGCCACAAGCTCATCATCAGCATGCTCATCATCAAGCAACACCTCTGCCACCTCCTCCTTCCTCAGCTTCAGCTATGAGTAGTTTGAATAACATGCCCTTGCGTTTGCCCTTTAATGAAAAGCCTTTAACAAAAGAAGCAGAAGATGAGAATGAAATTCCTATCAATACCAAAGAATGTGAAATTAGTATAGAAGACCATGCAAAGGAGATAACTGTAGAAGTCTCACAACCTATAGAAGAACATCCTGAAGATTTGAGTAAACCACAAACAAAAGACGAAGAACCAAAACCCAAACCATTGGTTAGGGTTAAAACTCCACAAGCTTTAATGGAACCAGCAGTAGAATTGCCTAATGAGAAGCCTGAAAGACCGGCTACATCAGTGACCCCTAAACGTTCTACTTCCCAAAGAAAACGTAGCTCTACGGCTGGCACCCCACCGCAGGAGCTGAGAAAGATTTGCATGGATAGTGATATACCAGAACATCATTTATCTAAACTTTATAGAAGATCATCCCTAAGTCGCAATAGCAGCATGGAACATTTGTCGGGAGACTTTTGTCAAGTTGAGCAGTTTGTCGATAAATCATGGGAGGATCTGATAGAAATTGATACCACATCTGAGACTTCGAAACTACAGCAGTTGGTTGATAATATCGAGAACAAGTTAACAGATCCTAATCAATGTATATTTTGTCAAAAAGTCATGTCTTGTCGTAGTTCCCTACAAATGCATATACGCACTCATACAGGTGAGAGACCGTTTAGATGTAAAATCTGTGGTCGGGCTTTTGCTACGAAGGGGAATTTAAAAGCTCATATGAGTATACATAAAATAAAGCCTCCAATGCGTTCTCAATTTAAATGTCCAGTATGCCATCAAAAATTCTCCAATGGTATCATATTGCAACAACACATACGTATACATACCATAGATGATGGCTCGGGTGGTTGTGGTTCCCAGTTGCCTGGACAATCCAGTGAAATGGCCGCTGCTATAGCGGAACACAATAATAGAATGCGTGCTCACATGGAGGCAGCCATATTGGAGGATCAAAATTCCAATAAATCATTAGGAGCTTcagaaaattttgacttttcaaCCACCTCCGAATATTCGGGACAAAGATCAGAATCATCACAAGGAGATTTTGATGAGTACATGACCATGGAGAGTACGGATGATTCGAGAGAGAATTCAACTTCGGTAACGCCTTTGGAAAAGAGAATTTCCGAAGATGGTGAAGATAAAGTAGAACAAGATATGGAACGATCAGAATCAGTGCGTTCAGAGGCAATAGATCTGACAGCACGCAATGGTTCACAACAGACGCATAAAGCTTTAGATCACTTACCCCATTTAATGGGTATGCCTCATAATCTTTGGTTAATGGCGGCTGCCAGAgaggaaatacaaaatttaggaAATCATGGTAAATTTCCATTGTTACCATTTGGACCTCTAGGATTTATGGGTTTACCACCTCAAGCCCATATCTGCCAATTGTGCTTTAAATTATTTCCGAGTCCCTCGGCATTGGAGACACATTTTCAAAATGATCATACCAaagatgctgctgctgcttctaCTGCAGATGTTGCAGCTTCAGTAccaacatcatcgtcatcatcaataTCATTGGCTACCAACACTTCGACAACGACCACATCTGCTACGACTGCTAATGATGGCAGTGCTACAGATTCCTTGGCAATTGagaatttcgataaaaattgtGATACAATAGCGGAGAACTCGGGTTCAATAGCCTTCAATAATAAGCTTTCTTTGAAtccaaatttatttcataaatttcaaacaCCCTCCGAGGAAGATCAGAATTCCCGCAAAACTCCGTTTGAGCGCAGAAGCAGTAATAGCAATGAAGATTGTCGTGAACAGCAAAGTAAACGGCTAGATATGGAACCACTTAAGAACCACATCAAATCTGAACCTTTTATGGATGGCGAAGAAGCAACTGCTAAATCTCCCCAAATGATAGACGACATAGACGATGAGGATGATGTATTTCGTAATTCCTCAACACCCCCATCGATATATGCACCCCATTCGTCTCTGCTAAGTCACTCTCAAACGGATAATTCAGAACATTCTCTGATGAAAATGCAAATGCTAACAACAATTCCTCATCAATTTTCGACCTCCCATCCTGCGATGCCTCCCCACATAGAAGCTCATCGTTTTCCAGCCACCCCACTCGATTTTCAACAGGCCCTGATGTCAGTGGGACCTCCAACATCTAGCCTCGATCCTCCTGtcaataataaacatttctgTCACATATGTCGTCGTAATTTTAGCTCCAGTTCAGCGCTACAGATACACATGCGCACACATACGGGCGATAAACCGTTCCAGTGTAATGTGTGCCAGAAAGCTTTTACCACCAAAGGAAACTTAAAGgTTCATATGGGCACTCATATGTGGTCGAATCCCACCTCCCGTAGGGGCCGACGAATGTCTTTGGAATTGCCTATTCATAGACCTGGTGGAAGTTTGGCATCAGATTCCGATTTTTTACCCAGACGGCCagatatattttttccatatttaccGCCATTTTTCAATGGCTTGCCACCAAAGCCTGGCGATTTAAATTCGACGCCACCATTTCCACCCCACATTACGCCTCAACACTTAGCCAATGGCTCTGCCGGACCTCCCAAATACCCACCAGGTTTACCCATGGGATTTCCGCCATTTCTACAACCTCCCTACAGCTTTAATCCAATGCTAAATCAATCATCAACGACCTCTTCATCATTAGAACGACAAACGAATGCAAAAACTCCTCTCAGTACAGAGCGAGAGGAAGACGAACCAAAGAATACAACACATTCATCGCCTAAACATCACCAACACAGCACACATATGACAGCTGATAAAGCAGATTCCCCACCGATTTCATCGGCCTGGAATCccatgttaaaaattaaaactgaaaacaatCAAAATGATATTAATCATCTTGTAGATCATAATGCAGAGTGTAGTAATCAAGATTAG
Protein Sequence: MCSIFRNRINYRGTPSSNSPGSPPILTKDLEADSNNNDNDNNNIMSRKTESPQETRESNSKSPAVEHSNNNDGVEEHADDIEEGERMDPKEDDEMDRDLTIEKQHKDEALDLSVLPPNGLPIKGHVSLEALQHTKVAVAQFAASALAQTPYFGEGSNDLTTILNVQRQHLMQLQFIQHLQSQLKRRDQVRECSEDDEGHEEDEEQEREDIGEDMEEEADEEGLNEDYLQQEELDLSQSKTGLRENKEDEKKNGLESNTFLRAEKLKTDDNVLSKSPKESVDKVQSPNYQPLLSGISSSLASTIITNHDPIPPPHEPNCLEMLQRRTEEVLDSASQSLHASQMQEEYEYIQKDGQGRGEIFKHRCKYCGKIFGSFSALQIHLRSHTGERPFVCNVCGSKFTTKGNLKVHYQRHTQIYPPILMPPGVGPPLEMPPSMREPLGPQAHHQHAHHQATPLPPPPSSASAMSSLNNMPLRLPFNEKPLTKEAEDENEIPINTKECEISIEDHAKEITVEVSQPIEEHPEDLSKPQTKDEEPKPKPLVRVKTPQALMEPAVELPNEKPERPATSVTPKRSTSQRKRSSTAGTPPQELRKICMDSDIPEHHLSKLYRRSSLSRNSSMEHLSGDFCQVEQFVDKSWEDLIEIDTTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTIDDGSGGCGSQLPGQSSEMAAAIAEHNNRMRAHMEAAILEDQNSNKSLGASENFDFSTTSEYSGQRSESSQGDFDEYMTMESTDDSRENSTSVTPLEKRISEDGEDKVEQDMERSESVRSEAIDLTARNGSQQTHKALDHLPHLMGMPHNLWLMAAAREEIQNLGNHGKFPLLPFGPLGFMGLPPQAHICQLCFKLFPSPSALETHFQNDHTKDAAAASTADVAASVPTSSSSSISLATNTSTTTTSATTANDGSATDSLAIENFDKNCDTIAENSGSIAFNNKLSLNPNLFHKFQTPSEEDQNSRKTPFERRSSNSNEDCREQQSKRLDMEPLKNHIKSEPFMDGEEATAKSPQMIDDIDDEDDVFRNSSTPPSIYAPHSSLLSHSQTDNSEHSLMKMQMLTTIPHQFSTSHPAMPPHIEAHRFPATPLDFQQALMSVGPPTSSLDPPVNNKHFCHICRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWSNPTSRRGRRMSLELPIHRPGGSLASDSDFLPRRPDIFFPYLPPFFNGLPPKPGDLNSTPPFPPHITPQHLANGSAGPPKYPPGLPMGFPPFLQPPYSFNPMLNQSSTTSSSLERQTNAKTPLSTEREEDEPKNTTHSSPKHHQHSTHMTADKADSPPISSAWNPMLKIKTENNQNDINHLVDHNAECSNQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00200111;
90% Identity: iTF_00922348;
80% Identity: -