Basic Information

Insect: Lucilia cuprina
Gene Symbol: Lip3
Assembly: GCA_001187945.1
Location: JRES01000147.1:115206-140360[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.014 0.96 9.7 0.1 3 23 458 478 456 478 0.96

2 17 0.0073 0.49 10.7 2.0 1 23 484 507 484 507 0.95

3 17 0.26 17 5.8 0.2 3 23 512 534 511 534 0.86

4 17 0.0038 0.25 11.5 0.1 1 22 542 563 542 563 0.95

5 17 4.4e-06 0.00029 20.8 0.9 1 23 571 593 571 593 0.97

6 17 0.00012 0.0078 16.3 3.5 1 23 599 621 599 621 0.98

7 17 0.0001 0.0069 16.5 1.1 1 23 627 649 627 649 0.95

8 17 0.49 33 4.9 1.8 2 22 656 676 655 676 0.94

9 17 0.22 15 6.0 0.3 2 23 1137 1159 1136 1159 0.95

10 17 0.31 20 5.5 0.6 1 10 1183 1192 1183 1205 0.79

11 17 0.49 33 4.9 3.4 1 23 1213 1237 1213 1237 0.92

12 17 2.1 1.4e+02 2.9 1.0 3 23 1243 1264 1243 1264 0.95

13 17 0.19 13 6.2 0.3 2 21 1277 1296 1276 1297 0.91

14 17 0.0002 0.013 15.6 0.9 1 23 1305 1327 1305 1327 0.98

15 17 6.3e-06 0.00042 20.3 1.8 1 23 1333 1356 1333 1356 0.97

16 17 6.5e-05 0.0043 17.1 1.3 1 23 1362 1384 1362 1384 0.98

17 17 0.00042 0.028 14.6 1.1 1 21 1390 1410 1390 1411 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.014	0.96	9.7	0.1	3	23	458	478	456	478	0.96
2	17	0.0073	0.49	10.7	2.0	1	23	484	507	484	507	0.95
3	17	0.26	17	5.8	0.2	3	23	512	534	511	534	0.86
4	17	0.0038	0.25	11.5	0.1	1	22	542	563	542	563	0.95
5	17	4.4e-06	0.00029	20.8	0.9	1	23	571	593	571	593	0.97
6	17	0.00012	0.0078	16.3	3.5	1	23	599	621	599	621	0.98
7	17	0.0001	0.0069	16.5	1.1	1	23	627	649	627	649	0.95
8	17	0.49	33	4.9	1.8	2	22	656	676	655	676	0.94
9	17	0.22	15	6.0	0.3	2	23	1137	1159	1136	1159	0.95
10	17	0.31	20	5.5	0.6	1	10	1183	1192	1183	1205	0.79
11	17	0.49	33	4.9	3.4	1	23	1213	1237	1213	1237	0.92
12	17	2.1	1.4e+02	2.9	1.0	3	23	1243	1264	1243	1264	0.95
13	17	0.19	13	6.2	0.3	2	21	1277	1296	1276	1297	0.91
14	17	0.0002	0.013	15.6	0.9	1	23	1305	1327	1305	1327	0.98
15	17	6.3e-06	0.00042	20.3	1.8	1	23	1333	1356	1333	1356	0.97
16	17	6.5e-05	0.0043	17.1	1.3	1	23	1362	1384	1362	1384	0.98
17	17	0.00042	0.028	14.6	1.1	1	21	1390	1410	1390	1411	0.95

Sequence Information

Coding Sequence: aagaaacaaattttcaacaaaatgttattaaaatcgGGCAATTTTATGTTCCTTTTAATCCTGCTGTTAAATTTTGCacgtaaaatacaaaaagcgGAAGCATTTAAAGTAACgGCTAAATTAATCTCCAATTATAATTACCCAGTCGAAGAGCATACAGTACACACTCCCGATGACTATATTCTAACCATTTATCGTATACCCGATTCACCGAAATTAAAACATCACAATAATACGGTGAAACCAGTTGTCTTTCTACAACATGGCATTTTATGTGCCTCCGATGATTGGATTATTAATGGTCCTGAAACTTCGCTAGCCTATATGTTTGCCGATCAAGGCTATGATGTTTGGCTAGGTAATGCTCGTGGTAATACCTACTCACGCCAACACAAGCACAAACATCCCGATTCTTCGGATTTCTGGAATTTTAGTTGGCATGAAATTGGAGTTTACGATTTAGCCGCCATGTTGGATTATGTTCTAGAGGAAACGCAACAACACTCACTACATTTTGTGGCACATTCTCAGGGTACAACAACTTTCTTTGTGCTTATGTCTTCGCTACCGTGGTATAATGAAAAAGTCAGAACGGTACATTTGTTGGCACCGATAGCTTTCATGAAAAATCATTCATTTTTACTATCGAAAGTGGGGCGTTTATTTTTGGGTTATCCCTCGTTTATGAGCATGATTTTGAGTGGTTTCGAGCTTTTGCCTACGACTAGTATACAGAAATTATTCTGTGAATATGTTTGTTCGCATGATTcgttgaaatttttatgttcgGGAATTTTGGATTTCATTGGTGGTTGGGGTACAAAGCAATTAAATcatACGCTATTGCCACATGTTTGTGAAACACATCCCGCCGGTGCCTCCACCACACAAATCATACACTATCTACAGCTCTACACTTCCGGAGATTTCAAACAATTCGATCATGGCATCGATATAAATCTCAAGAAATACAATCAGGAGACCCCACCCCACTACGAAGTTAGCAATATCAAAAGTTGTGTTAATATGTATTACAGCAACAATGATTACATGTCAGCAGTGGCAGATGTTGAATACTTAGCCACACTATTACCCTGTGTGGAATTGTATCGTATGCCCTATGATGATTGGAATCATTATGATTTCCTATGGTCGGTTAATGTTAAAGAGGTCATAAATGAtagaataatagaaaaaattgaagCATACGAGCAGACTCATAgtcatattttataCCAAACAAGCAAGCCAGTTGTTAGATTTAaggttatttttgttaaaatggCCGATGACGTTGCCTCCACCTCTACAGCAGCTGCTACGCAGGACATGCTGGTCAAACTATCCACAGATGGAGTACCTAAACTTTTCTGTCCCGTTTGCAATAAAGCACTCGTCTCTCTAGCCGGCTACGTGAAGCACGTCAAAAAACATGAACCGCCTGGTGGTTTCATTTGCCGCTATTGTGAGGCTCGTTTCTGTTCCGATGAAGAGCTTAAAAAACATCGTGAATCTGAACACACTACCATAGCGTGTCGCCTGTGCAAAACGGCTACCTTTACCAATGAGGACGATTATCGAGCTCACATTCGTGACATACATCAGGGTGTGGATcgtgaaatatttaaatgtgaaaaatgtggAGCCGCTTACAAGACTATCGATCCATATCGGCGTCACATTGAGACAGAGTGTGGCCGTATTAAACCGTATAAATGTGATAAATGTCCCATGGCATTTGTGAcgaaatataatttgaaacaacATTTGGATAATCATTCGGgtgaattgaaattttgttgcaGTTATTGTGGTAGGAATTTTAAGCAGAAGGCCAGATTGGTGGAACATGAGCGGACACATACGGGAGAGAAGCCGTATACTTGTGATGTTTGCGGCAAAAGTTTTTCACATCGTGAAAGTATTGTTACACATTCGTCCATTCATACCGGCATACGTTTGGTAGAGTGTCGCGGCTGTAGTTCTAGATTTTCATGTTATTCCAATCTCATCAAACATCGTCGTAGTCGCCCGGATACCTGTGGTTTGCCAGAATTTGATCCACCCAGAAATCGTATTAGAAAACATACTTCCAGAAGTAagtttagcaaaaacaaaaaaaacttaactcaTTACATTCTAAAACAAACACTAATCATATTTTTCATCTGTCCAGTTCCAGCCACTTTAAATCCCACCTCCGAAATCAAGGTggttaatgttaataaaatcattaaaccCGATGATCAGGTAAAAGTTCAAGCCCTAAAAAAAGAATCACCCAACAAACCAACCAGCAGTAAGCCAATGAAACCAAAACCTACAGCTCGTAAACGTACAGGACTTGGACCATCATCATCGACAGCACCCACATTACGTAAGCGTACACTAAGAAAAAAGGCCATTAGTTTGGATGTAGTCGATGATAAAGTGTATGATAATGAGTTCAAGGTAGAGGAGCTTGAAGATGAGGACATGGATGACGATGATGAGGATTATCTACCTTTGAAGTCCAAACAAAAGCCAGAAGAGACCAAATATATTATAGAAGAGACCAGTGAAATATCTTTGTCCGATAAAAACTTGTTACATCAATGGTCGGATGATAGTGAGGATGAATATGTGCCAGACTTTGAAACGGCCGATACGGATACAGAAGATGaagataaagattttaaaataacaatgcCAGACATTAAGATAGAAAACGATGATGAGGCTGAAGATGAAGTGGTAATAACCACTAATATACAAATAGAACCTTTAGGGGAATTTGAGTACACACGCATGGATTCCTATGCAGCTGAGGTGAAGTATGAAGATGAAAAGGATAATCTGTTTGAGGAGAAAGATCGCATTTTAGAgcatttgttaaatgaaaatgattATACTCCTTTGGAGGAGGGAGAGGCAGGTGGTGCTTATGAGGTAACAACCAGTAAAACGAAAAAAGGTAAAAGATTATCACGTAATGCTAAAGATTCCTTGGATTCTGAGGATATATTAAAAGAGACCGAAGtagcttttattaaatttgaggATAGTGATGATATTGAGGAACCTGGAGAAGATATTTTACAAGAGCggcaacaagccTTAGAAGTCACCAAGGATGATATAAAAGATTGCTATGTTTTACTAGAGGATATCACCAATTGCTTCCCCTCTTTAAAGGAAACGGCAAGTGTTAAGGTGCCACGTAATTTCCAACCCTTTTTCTCAAAAtcggaaaaaatcaaaaagtttattaaaaagcgTGGCAAATATCGACCCAGACGTCCGAAAAATGAGCCCGGATCTGATGAGGATAGCAAATCTGGCAATGTTAAATCTTATCGTTTGGCTTCGATATCAGCTAAACAATTGAGGGAGCGCATGAAGTTACTAAAGAAACGTGATAAATCTTGGAAATGTCCAGATTGcattaaaatctattatatGCGCAAACCTTTTGAGAAACATTTACGTGAAGATCATAAAAAATCTGAAGATTTTATTAaggaaatattcaaaaatgAATTGGAAGAAGTACAGACCAATGATGTGTTCAAATGTCATATATGcgataaaatctatttaatggAGAAACGTTTACTCTCGCATATACCCAAACATGGTCCGGATGGCACTTTGATACACAAGTGTCCTTGCTATTGtactttatactttaaaacACGTGAAGAGGCCACGGCTCATGCCCAGGATAAGCATAAGGATATGTTGTGGTGTGAAATATGTGAGAAATTTATGACCGGCTGTGATGCTCTCAAATCGCATAAGGCACGCATTCATGGCGGTAATAaggattataaaaataatcgtAATTTGATTTGTATGAAATGTGGCAAGAAATTTTTGGGACGTACCCAACTCACCGATCATGAGCGTTCCGATTGTGGTCGTTTGCCTTTGTATCAGTGTCAGGAATGCGGTAAATGTTTAACCACAGCGGGTATACTTAAAACTCATATGTTATTGCACAGTGATGCTAGACCTTATCAGTGTGATAAATGTGGTAAAACATTTAAGATTAAGGCGCAATATAAGACACATATAAAATATGCCCATACCAAGGAGAAGCGCTTTAAGTGTCATctttGTCCCAAAGAGTATCCTTATCGTGAGAGTCTTTTGACCCATATGTCAGTGCATACAGGCATTAAACGTTTTATGTGCAATGGTTGTGGTAAACGTTTTACTTGTGTTTCCAATCTGCAGGCACATCGTAAGGTTCAAGCAGAAACCTGTGGTCTATTGCCCTTAAATGCCAAGGCTACACAATATATGGGTGTACAAAAGGGCAATTTGTTAATGGGTGCCAAACCAGAGCCAGGTTTGGATTATGTAGAGACTCGCACCTTTATAGCGAAAAATGTTATTACACACGATTCACCCATGGCTATAGAACTTAATAATCAAGCACGCAACATGCAACAGGATGGCTCTTTGAGTGATGGCATTCCCTTGAACTATGTAACCTCGGGTTCTGAaattatacttatgtataatagagattaa
Protein Sequence: KKQIFNKMLLKSGNFMFLLILLLNFARKIQKAEAFKVTAKLISNYNYPVEEHTVHTPDDYILTIYRIPDSPKLKHHNNTVKPVVFLQHGILCASDDWIINGPETSLAYMFADQGYDVWLGNARGNTYSRQHKHKHPDSSDFWNFSWHEIGVYDLAAMLDYVLEETQQHSLHFVAHSQGTTTFFVLMSSLPWYNEKVRTVHLLAPIAFMKNHSFLLSKVGRLFLGYPSFMSMILSGFELLPTTSIQKLFCEYVCSHDSLKFLCSGILDFIGGWGTKQLNHTLLPHVCETHPAGASTTQIIHYLQLYTSGDFKQFDHGIDINLKKYNQETPPHYEVSNIKSCVNMYYSNNDYMSAVADVEYLATLLPCVELYRMPYDDWNHYDFLWSVNVKEVINDRIIEKIEAYEQTHSHILYQTSKPVVRFKVIFVKMADDVASTSTAAATQDMLVKLSTDGVPKLFCPVCNKALVSLAGYVKHVKKHEPPGGFICRYCEARFCSDEELKKHRESEHTTIACRLCKTATFTNEDDYRAHIRDIHQGVDREIFKCEKCGAAYKTIDPYRRHIETECGRIKPYKCDKCPMAFVTKYNLKQHLDNHSGELKFCCSYCGRNFKQKARLVEHERTHTGEKPYTCDVCGKSFSHRESIVTHSSIHTGIRLVECRGCSSRFSCYSNLIKHRRSRPDTCGLPEFDPPRNRIRKHTSRSKFSKNKKNLTHYILKQTLIIFFICPVPATLNPTSEIKVVNVNKIIKPDDQVKVQALKKESPNKPTSSKPMKPKPTARKRTGLGPSSSTAPTLRKRTLRKKAISLDVVDDKVYDNEFKVEELEDEDMDDDDEDYLPLKSKQKPEETKYIIEETSEISLSDKNLLHQWSDDSEDEYVPDFETADTDTEDEDKDFKITMPDIKIENDDEAEDEVVITTNIQIEPLGEFEYTRMDSYAAEVKYEDEKDNLFEEKDRILEHLLNENDYTPLEEGEAGGAYEVTTSKTKKGKRLSRNAKDSLDSEDILKETEVAFIKFEDSDDIEEPGEDILQERQQALEVTKDDIKDCYVLLEDITNCFPSLKETASVKVPRNFQPFFSKSEKIKKFIKKRGKYRPRRPKNEPGSDEDSKSGNVKSYRLASISAKQLRERMKLLKKRDKSWKCPDCIKIYYMRKPFEKHLREDHKKSEDFIKEIFKNELEEVQTNDVFKCHICDKIYLMEKRLLSHIPKHGPDGTLIHKCPCYCTLYFKTREEATAHAQDKHKDMLWCEICEKFMTGCDALKSHKARIHGGNKDYKNNRNLICMKCGKKFLGRTQLTDHERSDCGRLPLYQCQECGKCLTTAGILKTHMLLHSDARPYQCDKCGKTFKIKAQYKTHIKYAHTKEKRFKCHLCPKEYPYRESLLTHMSVHTGIKRFMCNGCGKRFTCVSNLQAHRKVQAETCGLLPLNAKATQYMGVQKGNLLMGAKPEPGLDYVETRTFIAKNVITHDSPMAIELNNQARNMQQDGSLSDGIPLNYVTSGSEIILMYNRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -