Lcup000017.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lucilia cuprina
Gene Symbol
PRDM15
Assembly
GCA_001187945.1
Location
JRES01000349.1:84928-89941[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 1 69 3.9 0.5 2 23 250 272 249 272 0.92
2 20 0.065 4.3 7.7 0.2 6 23 281 298 281 298 0.99
3 20 2.5e-07 1.7e-05 24.7 1.6 1 23 304 326 304 326 0.98
4 20 0.041 2.7 8.3 1.0 1 23 336 358 336 358 0.92
5 20 0.014 0.91 9.8 3.4 1 23 366 389 366 389 0.96
6 20 0.044 2.9 8.2 0.1 3 23 397 417 396 417 0.96
7 20 0.12 7.9 6.8 0.5 1 23 425 448 425 448 0.96
8 20 2.2 1.5e+02 2.8 1.3 3 23 456 477 454 477 0.90
9 20 9.3e-06 0.00062 19.8 4.6 1 23 483 505 483 505 0.96
10 20 2.6e-06 0.00017 21.5 0.9 1 23 511 534 511 534 0.97
11 20 0.12 7.7 6.9 1.0 2 23 866 888 865 888 0.96
12 20 0.26 17 5.8 0.1 6 23 897 914 897 914 0.99
13 20 5.2e-05 0.0035 17.4 1.6 1 23 920 942 920 942 0.99
14 20 0.0088 0.59 10.4 1.3 1 23 952 974 952 974 0.96
15 20 0.0023 0.15 12.2 1.1 1 23 982 1005 982 1005 0.91
16 20 0.0034 0.23 11.7 0.2 3 23 1013 1033 1012 1033 0.96
17 20 0.00094 0.062 13.5 0.5 2 23 1042 1064 1041 1064 0.96
18 20 3.3 2.2e+02 2.3 1.3 3 23 1074 1095 1072 1095 0.76
19 20 3.8e-05 0.0025 17.8 3.7 1 23 1101 1123 1101 1123 0.96
20 20 3.8e-05 0.0026 17.8 4.0 1 23 1129 1152 1129 1152 0.96

Sequence Information

Coding Sequence
ATGGATAAATGTATAGTGTGCTgtaaatcaaatgaaaatttatcttcTCGAATAACTATGCAATCAACTGAATGGAAAGAGTGGAATATACAGCGTATTATAGAGAAACATTTGTGGTGGTGGTATTTAAGACCAGCCTCTAGTAATGAAGCAGAACAATGGATATGTCTTCAATGTTGGCAGAACTTATCAACATTtcacaacttttataaaaaagttgaaaaagaacataaattatattatacattattattacacataAAAAGTGATACTGACCAAGAGGTTATTCAAGATATTAAAGTAGAGGATCAACATTTTGAAAATGGATCTTCAACACTTGAGGAAAATCCAGTACATATAGTGAAACCCAAAAGGGGTAGAAAGAAGAAAACTGTTTATGTAACAGAGAGCATACAATTGGAAGAACTAAATATTGTTGAAGTCAAAAGCGAAAATATAATCCATGATACTGCTGAGGAGCTAGCATCAGAAGAGATTTGTTTCTCAAATCACAGCGCAGATAATACGCCAGAGGAAGATgacttaaaagattttaaaggtGATGATAAACATGTACCAAGTGAAAAACTTAAGCGTAAAAGTCAAACTAAATCTAAGATTATTAATAaatgtagaaaagaaaaaataaaagctatCAAGAAGGAGAAGAAAGAGaaagttgtaaaaaatgaaaacaattcaaGGAATAAAAATGATGAATTCCTGGCAAACAGTGACTTTGTACTATCCTGTAGTATTTGCAATGACATTCTGGATTCCTTTTATAATCTTAAGATTCACTTTCGTGACAAACACAACACAGTGGCTTATGCTATGTGCTGTAATAAGAAGTTTTACCGACGAGATGTTTTGGTTGATCATCTAAATGTTCATAAGGATCCCAATTACTTTAAATGTCCGAAATGTGGCAAAACTGTAACAACTCGTTACAGTTTAACAAAACATATGGAAAATCATCAATTACATGAAACTCAACAGAATTTGTTTAATTGCGACAAATGTGACAAATCCTTCTTAAAAAAGATAGTTTTTGAACGACATGTCTTATTGCATATTCCAGAAGAAGAGCGAAAATTCCAATGTAGCATGTGTGTTAAGAAATTTGCTACAGAATATTTACGTAAACAACATATTAACCATACACACTCCAAAAAATACACCAAAATATGTGATGTATGTGGTGTAACAGTGTGGGATAAATATTCGTTTAATCGTCACATGGCCCAGCATAATGGTGTTAAAccagttaaatttaaatgtgatATCTGTGCTGCTgaattaacaaatatatatttcctaAATCGTCACAAGAAATTAATGCATACTGTACAACAAGAGCAAATATGTCCCCATTGTTCGAAAATATCACCCAACTATGTTGCCCATAAAACTCATATTAAATATGCCCACACATTGGAACGCAAACATGCATGTCATATGTGTGATAAGAAATTCCGTAGACCTAAAGaattaaaagaacatttaagCACTCACACTGGCGAGCCATTATATACATGTCCTTACTGTCCTCGCACATTTATATCGAATGCTAACATGTATAAACATCTTCGATTGAAACATGAAAAGGAATGGGAAAAGAGACGCATTAAGAGGGATGCAAAATCATTAGCTTGCAAAGAGTTTCTTAAAACAGTTGTATCACAACAAAGTGAATCTTGTGGCTATGAAGAAATAGTGCAACTTGAGAGCAGTGATGTGGTAAAAAATTTAACCGAATTAAACATGGAGTTTGAGAGCATTTGCTGTAAATCAAATGAAGATATATTTTCACGTATTACAACCGTATCTAGTGAATGGAAAGAATGGAATATACAACGTATTATAGAGAAACATTTATGGTGGTGGTATTTGAGGCCAGCCACTAGTAATGGAGTCGAACAGTGGATATGTCGTCAATGTTGGCAGGAGTTATCaacatttcacaatttttacaataaagttgAGAAAGAACAAAGGCTGTATGatagatttttaatatcaaacataAAAACTGATAACGAAAATATTTCATCGTCTGTTGACATAAAAGTGGAGGAGCAGAATTTTGAGAATGAAGCATCAATACTTACAGAAAACCTAATGCATTTAGAGAAACCCAAACGGGGAAGAAAAAAGAAGAGTGTAGATAAAACAGAAAGCTTAAATATAGAGGAATTAGCCGTTGTAAAGGTTAAGAgtgaaaatgacttgaatgaTAACACTGTTGATGAGGTGCCTGCAGTCGCTGAGGTAAATGTAAATGCTTTAGTAGCTGATGAAGTGACTTCGATAGATTGGGAGCATTGTTTTATAAATGATAGTGCAGCAGATGACACAGATGAGGAAGATTACGAACTCAAGGAATCGGAAGATGACGATAAACTTAATATATTACTAAAAACAAGAGCCTCACGCAAAGGtccaacaaaaactaaaactgttacaaaatttagaaaaaagtatacaaaatctaaaaaggaaaagaaagtAAAAGTTGTAAAGATTACCAATTCAAATGTCTCGGAAGCTATGAAGAAAAATGATGAATTTCTGGCAGACAATAATTTTGTATTGTCCTGTAGTATTTGCAGTGCGACTCTGGGTACATTTTACAAGCTTAAGAATCACTTTCGCAAAGAACATGACATTTTGGGTTATGCCATGTGTTGTAATAAGAAATTCTATAAGCGTGGCGTCTTAGTTGATCACATAAATGTCCATAAAGACcccaattattttaaatgcctGCAATGTGATAAAGCGCTATCAACTCGTCGCAGTTATGAAAAACACATGGAAACTCATCAATTGTACGAAAGTCAGCAAAACTTATTTACTTGCGATAAATGCGACAAGTCTTTCTTGAAAAAGGCAGTTTTTGATCGCCACGTCTTAACACATGTGCCTGAAGAGGAGAGAAACTTTCAGTGCAGCATGTGTGATAAGAGATTTGCCTCGGAATATCTGCGTAAACAACATGCCTCTTTAACACACTCCAAAAAATACGCCAAAATTTGTGATATGTGTGGAAAATTGCTGCGCGATAGTTTCTCGTTTATACGTCACATGGCAGAGCATAATGGAGAAACACCagcaaaagtaaaatgtgatattTGTGGGGCAGagttaacaaacaaatatcgCCTAAATCGTCACAAGAAAATGATGCATACCGAAGAAAATCAACAAGAACAAATATGTCCTTATTGTTCAAAGATATCGCCGAATTTGAATGCCCATAAACATCATGTTAAATACGCGCATACTTTAGAACGTAAACATGCCTGTCATATGTGCGATAAGAAATTCCGACGTCCTTTAGAATTAAAGGAACACCTTAGCACACATACCGGAGAGCCATTATATACTTGTCCCCATTGTCCGCGTACATTTATATCCAGTGCAAATATGCATAAACACCGTAAACTAACGCATCGAAAGGAATGGGAAGAGGGAAAAATGAAAAGGGAAGCAAAAGCATTGGCAGGCAAACAGTTTCTTAAATCTGTTATCGCATCTCAAAGTGAAACGCCCTATACAGGAATTTCTATAATGGAGCCGGTTGGCAATGAAACGGTACCAAATTTAACAGTGATGAATTTttga
Protein Sequence
MDKCIVCCKSNENLSSRITMQSTEWKEWNIQRIIEKHLWWWYLRPASSNEAEQWICLQCWQNLSTFHNFYKKVEKEHKLYYTLLLHIKSDTDQEVIQDIKVEDQHFENGSSTLEENPVHIVKPKRGRKKKTVYVTESIQLEELNIVEVKSENIIHDTAEELASEEICFSNHSADNTPEEDDLKDFKGDDKHVPSEKLKRKSQTKSKIINKCRKEKIKAIKKEKKEKVVKNENNSRNKNDEFLANSDFVLSCSICNDILDSFYNLKIHFRDKHNTVAYAMCCNKKFYRRDVLVDHLNVHKDPNYFKCPKCGKTVTTRYSLTKHMENHQLHETQQNLFNCDKCDKSFLKKIVFERHVLLHIPEEERKFQCSMCVKKFATEYLRKQHINHTHSKKYTKICDVCGVTVWDKYSFNRHMAQHNGVKPVKFKCDICAAELTNIYFLNRHKKLMHTVQQEQICPHCSKISPNYVAHKTHIKYAHTLERKHACHMCDKKFRRPKELKEHLSTHTGEPLYTCPYCPRTFISNANMYKHLRLKHEKEWEKRRIKRDAKSLACKEFLKTVVSQQSESCGYEEIVQLESSDVVKNLTELNMEFESICCKSNEDIFSRITTVSSEWKEWNIQRIIEKHLWWWYLRPATSNGVEQWICRQCWQELSTFHNFYNKVEKEQRLYDRFLISNIKTDNENISSSVDIKVEEQNFENEASILTENLMHLEKPKRGRKKKSVDKTESLNIEELAVVKVKSENDLNDNTVDEVPAVAEVNVNALVADEVTSIDWEHCFINDSAADDTDEEDYELKESEDDDKLNILLKTRASRKGPTKTKTVTKFRKKYTKSKKEKKVKVVKITNSNVSEAMKKNDEFLADNNFVLSCSICSATLGTFYKLKNHFRKEHDILGYAMCCNKKFYKRGVLVDHINVHKDPNYFKCLQCDKALSTRRSYEKHMETHQLYESQQNLFTCDKCDKSFLKKAVFDRHVLTHVPEEERNFQCSMCDKRFASEYLRKQHASLTHSKKYAKICDMCGKLLRDSFSFIRHMAEHNGETPAKVKCDICGAELTNKYRLNRHKKMMHTEENQQEQICPYCSKISPNLNAHKHHVKYAHTLERKHACHMCDKKFRRPLELKEHLSTHTGEPLYTCPHCPRTFISSANMHKHRKLTHRKEWEEGKMKREAKALAGKQFLKSVIASQSETPYTGISIMEPVGNETVPNLTVMNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-