Basic Information

Insect: Lucilia cuprina
Gene Symbol: -
Assembly: GCA_001187945.1
Location: JRES01000301.1:44101-49590[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00032 0.021 14.9 1.4 2 23 454 475 453 475 0.96

2 10 1e-05 0.00067 19.7 3.7 1 23 481 503 481 503 0.98

3 10 0.00019 0.012 15.7 2.9 1 23 509 531 509 531 0.99

4 10 4.6e-07 3e-05 23.9 1.4 1 23 537 559 537 559 0.99

5 10 0.00028 0.019 15.1 4.4 1 23 565 589 565 589 0.93

6 10 5.6e-05 0.0037 17.3 0.2 1 23 1017 1039 1017 1039 0.98

7 10 1e-05 0.00067 19.7 3.7 1 23 1045 1067 1045 1067 0.98

8 10 3.1e-06 0.00021 21.3 2.0 1 23 1073 1095 1073 1095 0.98

9 10 2.2e-06 0.00015 21.7 3.0 1 23 1101 1123 1101 1123 0.98

10 10 0.0067 0.44 10.8 1.5 1 23 1129 1153 1129 1153 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00032	0.021	14.9	1.4	2	23	454	475	453	475	0.96
2	10	1e-05	0.00067	19.7	3.7	1	23	481	503	481	503	0.98
3	10	0.00019	0.012	15.7	2.9	1	23	509	531	509	531	0.99
4	10	4.6e-07	3e-05	23.9	1.4	1	23	537	559	537	559	0.99
5	10	0.00028	0.019	15.1	4.4	1	23	565	589	565	589	0.93
6	10	5.6e-05	0.0037	17.3	0.2	1	23	1017	1039	1017	1039	0.98
7	10	1e-05	0.00067	19.7	3.7	1	23	1045	1067	1045	1067	0.98
8	10	3.1e-06	0.00021	21.3	2.0	1	23	1073	1095	1073	1095	0.98
9	10	2.2e-06	0.00015	21.7	3.0	1	23	1101	1123	1101	1123	0.98
10	10	0.0067	0.44	10.8	1.5	1	23	1129	1153	1129	1153	0.92

Sequence Information

Coding Sequence: atGGAAATAAATATAACTTGGAATATTTGCCGAGTATGTTTGcaggaagaaaataaaaatgccaAAGAATCTAATAACCAATTGAGAAACTTATTTAATGAAGATAAAAAATTGGCTCAgcatatttatgatttttctgGGATTATGaTGAAACCAAAAGATTCCTTGCCGGATAAAATCTGTTTGAagtgtataaaaattgtaaataatgcaGTGCAGTTTCGAAAAACGTGTCGTGCCTCTAATAGTTATTTACAAAACGTGTTGGAACGCACTAAATCGGCTAGCTCATTGTTTAAACCTGCTATACACACTAGCGTTGctagtgatgatgatgatggtttgGAGGAACAAATGGAAACAGAGGCTGTTGGGGGAAATGAGCATTCCCGAGTAGAAAAGGCTATAGAAAGTGAGTGCGATGAAAAGATTGTCGATTATTCTGAAGCAGCTCACAAACAGTCTGCTCTTCAAGAGAAAATAGCTGAAGTGATTGAAAGTAGTGAACAGAATGTGGCAGACGAAGTGGTTAATGATACTGGCGTAAATCTTGTAGAAGTGATGGAGCATTCTGATGATTTAATAAACGAAATCATTGATGATAATCCAGACAAATCATTGACAaatgcaaaacttttaaaaaaagaaactaaagaaatttcaaaaattaccaAATCTGAAACTTCGCAATTACAAAAGTTCTATATGAAtgctaaatttacaaaaattaaaaatactgaaGAGGATTTTGAAGAATGTAATGAACAGGACTTGATACAGGCTGACTTAGCAGCGGAACAAGAAACTACAAAAGAAGACCAAAAAGAGGATGATTTATATTATCTgcttaaagatattaaaaatgaaCTTGCCAACTGTAATGAAAACCAGGAAGTCATACAAGAAACAGAGGAACAAAGTCCCCAAACTGATGAGAGTATTGAATATTATGCTATCGAAGATGAAGAAGATATAGAGGAAAATATTGAACAGGAAGTGGATGAGGAGGATGATAATGATTTAATGTTACATTTCGAAACAAACAATGAGGATAATCCAAACCAAGTTACTTCAACTGTCGATACAAATGATGAGTCTGAATATAATGaacaaaattcaaatacttCCAATATGATAAGTGATTTAGAGGAGGAATATATTGTGGATGATAGTGTtagtaattataatataatatctGACGCCgaagatgaaattaaaataaaatcactaGATGTCTCTACTACGGCCGGAAACACTGGCTGTATTACTATGTCTTCTAGCAGACGTAAACCTAAACGCTATTTAGCTAAAGTTTCAGATAGTAATTCTACTACAGCTCGTGTTCAGCAGCAAGTTTGTGTTTGTGAAATATGTGGTAATCAATTTACCAATCGAAATCTTATGAATTTACATATGAAGGTTCACTATCAGGAGAAGAATCATCAGTGCGAattgtgttttaaacgttttattacTGCCTGTAATCTGCAAGCACACATGCGCATTCATACGGGAGAAAAACCTTTTCAGTGCCGCTACTGTGGCAGACGTTTTAATGATCGTAGTTCTAGTTTAAGGCATGAAAGGACTCACACCAATGAAAAGCcttttaaatgttcaaattGTGGTAAAACTTTTACTTTGGCTACAACTCTACAAAATCACATGAAGGTGCATACGAATGAAAGATCCTACagATGTGAACCTTGTGGTAAATCCTTTAAATTGTCTCATCATTTAAAAACCCATCAAAATACTTCGTTACATCAGCCGAAAAAACAAGGTCTAGCGACAGATGAGGGATCTATAATGCGTCATCTATTCAATGAGGATAAAATGTTGGCTAAACAAATCTATGAATGTTCCGGCATTATGaTGAAACCCAATGATAGTTTACCcgagaaaatatgtaaaaaatgctttGCAATGGTTAAACAAGCAATGAATTTTCGGAAAAACTGTCGATCCTCTAATGCGTTTTTACAATCTGTTTTGCAACGCACCAAATCGACTAGTATATTGTTTAAACCGGAGAGGCCTCAATTAGAAGACTTTGAAGAGGATGTAGAGGAAACCATAGAGGAAGATAAAAATGAAAGTGTTAACACTGTAGACGTTTCTACCACCGTTAAAAAAGCAGAACAAAAACGTTCGACCACACCTTTAGAACATACgcctaaaaaattaaaaaaggattcCCTCACCAATGAAATAAATAGTAATACCGATGATCTTATAGCTCATGAAATTGAAGAAGAGGAAATGACGGAGCAGGACTTACATAATATAGTAGAAATGGAAGAAATATTACAACCAAATGTAATTGAAGAAAATCACAAGCATAAAGTAGGGGAAAAAGGGGACAATAcaaatattgataaacaaaCAGTAAATAAGCTTAAAGTTAAAGGATCAAAAGATAATTCTTCCCAAAAACAACTACAAGATTTTCAAATTGATGAAGTTAATGCCGAAAAGGATTTAAATCAAATGGAAGAGGAAAACTCAGCAGAAATCAACAATCAAGAATTTTTCTTACTTAAACACATTAAAGATGAAAACGAAACTAATCTCCACAATGATAATGATGTGGAAGAAGAAGAGCAGCAGGAAGAACTTATAGAAACGGATGAACAAGAAGATCAAGAAAATGTACAATTTCTACCCCTAGAAGATGAACCGGAAGAAGTTGAAGAACAACTTATGTTAAACTCTGATTCCGATATGGAAGATAATCAAGCACAAGTAAGTTCAACTGTTATCACCAAACAAGAGGAGGAAGAAGAAGAAGCAGAAGCTGGTTTTATCGAACTAGAACaagaaacaaattcaaatttatccAATGCCAGTCATAATTTATCCACTGAATATATAGTAGATGAATATTTAATTGATGATTCCAATAATAGTAATATATCATCACAAAATTCGGGTGTGGTAGTGGTTAATTCAAAAATATCCAAATTTGTAACAACCACAAGTAAAAAACGACAAACCGATCCTGATAAGACAAATCATAAAGATGTTACACAACAACAGCCGCAAGTATTTGTTTGTGATTTATGTGGCAATACGTTTACCAGTCGTCAGCTAATAAATGCACATATGAAAGTACATCGTCAGGAAAAGAATCATCAATGCGAattgtgttttaaacgttttattacTGCCTGCAATTTGCAGGCTCACATGCGCATCCATACGGGAGAAAAGCCATTTGAATGCCAATATTGTGGTCGACGTTTTAGTGATCGCAGTTCTAATCTAAGGCATGAAAgAACCCATACAAATGAAAAACCTTTTCACTGTAATGAATGCGGCAAATCATTTTCTTTAGCCACTACTTTAAAAAAGCATCAAAAAGTTCATACGGGAGAACGTTCCTATAGatGTGAACCTTGtgcaaaatcttttaaactacCACATCAATTAAAGGCCCATAAAAATACCACTTTACACAAAGCTGTAGAGCAATTAGGTCTATTATCTAATTAA
Protein Sequence: MEINITWNICRVCLQEENKNAKESNNQLRNLFNEDKKLAQHIYDFSGIMMKPKDSLPDKICLKCIKIVNNAVQFRKTCRASNSYLQNVLERTKSASSLFKPAIHTSVASDDDDGLEEQMETEAVGGNEHSRVEKAIESECDEKIVDYSEAAHKQSALQEKIAEVIESSEQNVADEVVNDTGVNLVEVMEHSDDLINEIIDDNPDKSLTNAKLLKKETKEISKITKSETSQLQKFYMNAKFTKIKNTEEDFEECNEQDLIQADLAAEQETTKEDQKEDDLYYLLKDIKNELANCNENQEVIQETEEQSPQTDESIEYYAIEDEEDIEENIEQEVDEEDDNDLMLHFETNNEDNPNQVTSTVDTNDESEYNEQNSNTSNMISDLEEEYIVDDSVSNYNIISDAEDEIKIKSLDVSTTAGNTGCITMSSSRRKPKRYLAKVSDSNSTTARVQQQVCVCEICGNQFTNRNLMNLHMKVHYQEKNHQCELCFKRFITACNLQAHMRIHTGEKPFQCRYCGRRFNDRSSSLRHERTHTNEKPFKCSNCGKTFTLATTLQNHMKVHTNERSYRCEPCGKSFKLSHHLKTHQNTSLHQPKKQGLATDEGSIMRHLFNEDKMLAKQIYECSGIMMKPNDSLPEKICKKCFAMVKQAMNFRKNCRSSNAFLQSVLQRTKSTSILFKPERPQLEDFEEDVEETIEEDKNESVNTVDVSTTVKKAEQKRSTTPLEHTPKKLKKDSLTNEINSNTDDLIAHEIEEEEMTEQDLHNIVEMEEILQPNVIEENHKHKVGEKGDNTNIDKQTVNKLKVKGSKDNSSQKQLQDFQIDEVNAEKDLNQMEEENSAEINNQEFFLLKHIKDENETNLHNDNDVEEEEQQEELIETDEQEDQENVQFLPLEDEPEEVEEQLMLNSDSDMEDNQAQVSSTVITKQEEEEEEAEAGFIELEQETNSNLSNASHNLSTEYIVDEYLIDDSNNSNISSQNSGVVVVNSKISKFVTTTSKKRQTDPDKTNHKDVTQQQPQVFVCDLCGNTFTSRQLINAHMKVHRQEKNHQCELCFKRFITACNLQAHMRIHTGEKPFECQYCGRRFSDRSSNLRHERTHTNEKPFHCNECGKSFSLATTLKKHQKVHTGERSYRCEPCAKSFKLPHQLKAHKNTTLHKAVEQLGLLSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -