Lcup003567.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- -
- Assembly
- GCA_001187945.1
- Location
- JRES01000955.1:320364-327851[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.04 2.7 8.3 1.9 1 23 280 302 280 302 0.98 2 15 0.00084 0.056 13.6 1.5 1 23 308 331 308 331 0.96 3 15 2.9e-06 0.0002 21.3 1.1 1 23 336 359 336 359 0.91 4 15 2.8e-05 0.0019 18.2 0.7 1 23 365 388 365 388 0.97 5 15 0.027 1.8 8.9 2.8 2 23 396 418 395 418 0.95 6 15 0.0051 0.34 11.1 0.6 1 21 424 444 424 445 0.94 7 15 6.7 4.4e+02 1.3 0.2 1 8 669 676 669 699 0.82 8 15 7.3e-06 0.00049 20.1 0.6 2 23 830 851 830 851 0.97 9 15 0.00019 0.013 15.6 3.9 1 23 857 879 857 879 0.94 10 15 1.4e-05 0.00094 19.2 1.7 1 23 885 907 885 907 0.98 11 15 10 6.7e+02 0.8 7.5 1 23 913 936 913 936 0.95 12 15 6.2e-05 0.0041 17.2 1.6 1 23 942 964 942 964 0.98 13 15 9.8e-07 6.6e-05 22.8 3.8 1 23 970 992 970 992 0.98 14 15 0.00029 0.02 15.0 2.3 1 23 998 1020 998 1020 0.98 15 15 2.8e-06 0.00019 21.4 0.2 1 23 1026 1048 1026 1048 0.98
Sequence Information
- Coding Sequence
- ATGTCTTGGCATatgaaaATGTGTGATACCGCCGAAGATATGGATGAATATATTGAATATGAATTTGCACGCGATTGTATAGAAATTGCAGATGATTGTGAGGATATAGACGATGGCGTAGTGGTGGACAACGATTTGTTAATACAACGTCACACGGAACATTTGCCCGAAGAGACTTTTCTCTATGAAGAAGACGATGAGGAAGAACAGCAGCTGGAAGACCAGGAGGAGGATGAAATGCATGATTATGAAATTGTAGAAGAATTGGATGAAGATGTAGAACAACTTTTAATATGTGATACGGCCTTAGATATTAAGGCAGAGGTAGTAGAACCCACACAGCAGGAAGAGCAGGAGGGGCAGGCGCCAGAAGAAaccaaaaatttcaaagatGAATTTATGGATCAAGATGTAGAAGAAGATCATTTAATAGATGAAGATACAGCAAATGGTTTTGGTCCAGAGGAGGAATTTCAGGAAGTAGAATATGAGGAAGTGGGTTTAGAGGAGGAGCAGTCAGCTATTGATGTAGAAGAACAGCTAATAATACCAGATAAAAAGGAAGTAAAACAGGAAAAACCCAAAAAACCACCACCACAACCCTGTCCCGAGGATAAGGGACCCAAAGGTGTAGCCAGAAAGTATATGCTGTATGATGAACTAGTAGCCACTATAGTAGACTATGATCCCGACGGCACACCAATTGTAGAGTTTTCCGTATCCAATAATGAGGCTGATGAAAAATTACCCATGGAATGTGGCATTTGTCCGGATGTTATGAGTAGAACAAAAATTACCGCCCATCTTAAAACGCATCTAGTGCCGGGCACTAATCGTTATCAGTGTATTTATTGTGAGGAAACCTATAAAGATTGCAAATATTTGGCGGGACATGCTAGACGTCACATGGGCATACGACCCTATGTGTGTGAattgtgtaaattatatttttccactAAACAAGATCTAAGGGTTCACAATCAAAGACGCCACCAGGAAAAAGATCATATTTGCGAGGTGTGTGGTAAAACTTTTGCTCAAAATACTCAATTGAAACGGCACCGGGAGGCTACCCACGAAAAGAAACGACGTTTCAAATGTGACCTTTGTCCCAAgtcttattataaaaatttcagtcTGCAGGAACATATAAGAGCCGTGCACATGGGTAAACGGCGTATTATTGTGTGTCCCTTTTGTGGTATGCAGTGTAGGGATGCTCACAAAATGGCACGACATCGCAAACAATATCATTTGCATCAGACGCACTTTGAATGTCATATTTGTAATGAAGAATTTACCGATATCAATTATTTTGATGCTCACAAAAGATCTATACAATGTCGCAATAATACACGACGTAAACTGGAAGAAGAGggtcaacaacaacagcagcagcagcaagagGAACAACAGCTTTTACAGCAGGCAGAAGATGCCAAGCAACACATACTCAACGAAGATGATAGTAGTCAACAATATTCTCAACACTCCAATGAACATAACCTGCTACACacgcaacaacaacagccacaaCAACACCTGCTTCATGGCCATGATGATGGCGAAGAGGATGCTGATAATGCTTTAGAAACAGTACAAATTATAGATGAATGtgattataaacatttaataacatCATCACCTACACACCACCAGCACCAGCAACATCATCATACAGgacaatttatgttaaataatgaTTTACTGCAACATCATAAAATCGAAGAAATCTCACCAGATGATGTGGCCGATGATGAGGAACTAGTTTATGAAATAACCATAGATaatTTCATTAATGAACACGAAAATATCGGTTATGATATATTATCAGAGTTACATAAATTCGATATGTATATTAAGGGCTATAAACATCCGGCATTTCCCTCGGATGCCCTTAATGAAGAACCTATCGAATtggaatattataaaaaatcacttaataatgataaaattataaTGGATTATGCACGTTACTCTTGGAATTGTCAGGGTGAAATGATATATAGTTGTCAAATTTGTGAGAAAATGaaagtaacaacaaataaagatTTCAATGTTATGGATGAGTTTTTGACACATGTCGAGCATATGCATGGAACGAGCATTAAACAGGAACAGGAAGAACAAAGAATGGATAAACAGACGGAAGAGTTGTGGGTGGGAGAATTGGAGAGAATGAAAAAGACTGCTTATAAAAAACATAGTGAAGAGTTTCTCAAGGAAATCGATGAGATCCTGGGTGTAGAAGATTTTGATGCTAAtggtattttaaattctttggaATCCCACAAAACTTCAGAACAAGATAGTAGTTCTGAAATTCTATCGGATTCTAGCAAAGAAAATGCCTTATCACCCTCtagcacaacaacaacaaccaactcTAATGCCAGCTACAGCCCGACCCCAAAAATCTACAGTAAACCCTGTAAATTGTCGCAACAAGAACGtcaaacgaaaagaaaaaagaaacgtaCTTCGGGTCAATGTGACATCTGTAATCGTACCTTTAATGATCTCTACAATTTGCGTATACATAAAATGATCCATACGGGCGAAAAGCCCTTTCAGTGTGAAGAGTGTGGCAAACGTTTTCGCCAATACAATAAGCTAAAAATTCACTGTATTACACACACCAATGAGAAACCCTTTAAATGTGATATATGTGGTAAAGGTTTTCGTTTTCGCAATTATCTATCCGTACACAAACGTTTACATTCTGGTGAAAATCcctataaatgtaaattttgtgaagaatATTTTCATTCGTTACACTCAAGACGTTTGCATACAAAACTCAGGCATACAGAGGCGAAAACATTTACCTGCTCGATTTGTGGTAAAATCTTGACAGCTCAATGTTATTTGACAGCTCACATGAAGCGGCATACGAATCAGCGTGATTTTAAATGTGACAATTGTGGTAAATGTTTCTTTAGTCAATCACAACTTAAGGATCATCAGTTGGTGCATACCAACCTTAAGCCGTTTGAGTGCGAAGTTTGTCGGTCCCGTTTTCAGCGTAAATCGAATTATACACAACATTTGAAAATACATACGGGCGAAAAATCCTATGTCTGCTCTATATGCAATAAATCGTTTGCTCAAAATGCCGGCCTTTATGGACATATGAAGTCACatgctaaataa
- Protein Sequence
- MSWHMKMCDTAEDMDEYIEYEFARDCIEIADDCEDIDDGVVVDNDLLIQRHTEHLPEETFLYEEDDEEEQQLEDQEEDEMHDYEIVEELDEDVEQLLICDTALDIKAEVVEPTQQEEQEGQAPEETKNFKDEFMDQDVEEDHLIDEDTANGFGPEEEFQEVEYEEVGLEEEQSAIDVEEQLIIPDKKEVKQEKPKKPPPQPCPEDKGPKGVARKYMLYDELVATIVDYDPDGTPIVEFSVSNNEADEKLPMECGICPDVMSRTKITAHLKTHLVPGTNRYQCIYCEETYKDCKYLAGHARRHMGIRPYVCELCKLYFSTKQDLRVHNQRRHQEKDHICEVCGKTFAQNTQLKRHREATHEKKRRFKCDLCPKSYYKNFSLQEHIRAVHMGKRRIIVCPFCGMQCRDAHKMARHRKQYHLHQTHFECHICNEEFTDINYFDAHKRSIQCRNNTRRKLEEEGQQQQQQQQEEQQLLQQAEDAKQHILNEDDSSQQYSQHSNEHNLLHTQQQQPQQHLLHGHDDGEEDADNALETVQIIDECDYKHLITSSPTHHQHQQHHHTGQFMLNNDLLQHHKIEEISPDDVADDEELVYEITIDNFINEHENIGYDILSELHKFDMYIKGYKHPAFPSDALNEEPIELEYYKKSLNNDKIIMDYARYSWNCQGEMIYSCQICEKMKVTTNKDFNVMDEFLTHVEHMHGTSIKQEQEEQRMDKQTEELWVGELERMKKTAYKKHSEEFLKEIDEILGVEDFDANGILNSLESHKTSEQDSSSEILSDSSKENALSPSSTTTTTNSNASYSPTPKIYSKPCKLSQQERQTKRKKKRTSGQCDICNRTFNDLYNLRIHKMIHTGEKPFQCEECGKRFRQYNKLKIHCITHTNEKPFKCDICGKGFRFRNYLSVHKRLHSGENPYKCKFCEEYFHSLHSRRLHTKLRHTEAKTFTCSICGKILTAQCYLTAHMKRHTNQRDFKCDNCGKCFFSQSQLKDHQLVHTNLKPFECEVCRSRFQRKSNYTQHLKIHTGEKSYVCSICNKSFAQNAGLYGHMKSHAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -