Lcup000010.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- znf711
- Assembly
- GCA_001187945.1
- Location
- JRES01000349.1:90520-95224[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.024 1.6 9.0 0.1 6 23 192 209 192 209 0.99 2 19 0.062 4.1 7.7 1.8 1 23 215 237 215 237 0.96 3 19 0.00038 0.026 14.7 1.8 1 23 248 270 248 270 0.98 4 19 0.0059 0.4 10.9 0.3 1 21 278 298 278 301 0.87 5 19 9.3e-06 0.00062 19.8 0.6 3 23 309 329 308 329 0.96 6 19 0.00042 0.028 14.6 0.2 2 23 338 360 337 360 0.96 7 19 1.2 82 3.7 1.8 2 23 369 391 368 391 0.83 8 19 4.6e-05 0.0031 17.6 1.9 1 23 397 419 397 419 0.96 9 19 9.7e-05 0.0065 16.6 4.4 1 23 425 448 425 448 0.96 10 19 0.79 53 4.3 0.9 2 23 656 678 655 678 0.95 11 19 0.11 7.2 7.0 0.9 6 23 687 704 687 704 0.99 12 19 4.9e-05 0.0032 17.5 0.2 1 23 710 732 710 732 0.98 13 19 0.0079 0.53 10.5 3.2 1 23 739 761 739 761 0.97 14 19 0.034 2.2 8.6 1.1 1 21 769 789 769 792 0.85 15 19 5.5e-06 0.00037 20.5 1.7 3 23 800 820 799 820 0.96 16 19 2.1e-05 0.0014 18.6 0.4 2 23 829 851 828 851 0.96 17 19 0.74 50 4.3 0.5 3 19 861 877 859 882 0.52 18 19 6.2e-05 0.0042 17.2 2.2 1 23 888 910 888 910 0.96 19 19 7.2e-06 0.00048 20.1 2.8 1 23 916 939 916 939 0.97
Sequence Information
- Coding Sequence
- ATGAAACAAACATCAGCCCATGGCTCACCATGGATTTGTCGTCAATGCTGGCAGGAGCTGTCCAACTTTCATGCATTTTATCTGAAAGTAAAAAAGGTACACAAACAATATGATTTGCAAAAGTGGCCGCAGCTGAAATGTTCTACTAAGGATAATGATGAATATGTGTCtaagacaatatttttatattctgtaAAAGAAGAATTCAAGCTAATTGATAGCACACTAGAAACAACACTTGAGGAAGATTTGGTGCCTTTGgataaattcaaaagaaatattcaaaataacaattcagcagtaattaatgaaaatattgaaataaatgaacTACCGATCATAGAATCTGTTAAAGATGAAGATTTACCCGAAGATAGTGATGAAGATGGGCAAAGCAATAGGGTGGATAATGATTCGTGGGATAATAATTTGGATGACAATGTCGGTAATAATGAGATAACTACAgcgaatagaaaaaaagaaacaactaaaAAACTTAATCTTAAAATTGattttctaaaactaaaaaccCACTATCGCCTTGAACACCAAACTCTCGGCTATGCAATGTGttgtaataagaaattttacaatCGCGGACCACTGGCCGATCATTTGCGAGTTCATAAAAATccaaattactttaaatgtacAATTTGTCAACGTATTTTGGCTCATCGCTTGAGCTACGAAAATCATCTTGAATTTCATAAACAGGAGAACAAGACGCGTGAAAGAATCTTCCGGTGTGAGAAATGCGAtaagtcattttttaaaaaagcagtCTACGATCGACATATACTGTCACATGTTCCCGAAGAGGATCGAAAATTTCAATGTGATGAATGTGATAAGAAATTTGCAGCCGAGTATTTGGTTAACCAGCACAAAGCTTTTGCTCATCTAAATAAGTACGGAAAAATATGTGATATTTGTGGTAAAACATTTCGTGAACGTTTCTCTTTCACACGCCATATGGCTGAACATAATGGTAAACCGCCGGAGAAAGTTCCATGTGATATTTGCGGAGTCGAATTAACCAGTAAATATCTATTGAATCGtcataagaaaaaaatgcacaCAGAAGAAAATCAACAAGAGCAAAAATGTCCCTACTGTTCTAAGGTATCACCCAATATGCATGCCCATCGTCAACACGTAAACTATGCACATACAATGAAACGTAAACATGCTTGCAACATGTGCGAGAAGAAATTTAAACGGCCTCTGGAATTGAAAGAACACTTAAGTACCCATACCGGTGAGCCATTGTATACTTGTCCCCATTGTACGCGAACATTTATATCAAGTGCAAATATGCATAAACATCGTAAAGCATCACATCCCAAGGAATGGCAAGAGtcaagattaaaaaaattaaatgatcaAAAATTAAGAGAACTAACAATTAAAGAACATTTAAATCGCTGTGCCACTACAAATGATGACGTTGCAACCATTTTAGAATGTTCTCAAGAAAATGGTATGCAAGCAAGTTCCGGAAAGGAAACTAGCAATGTCAACGTTAAACAGGAATCGGAGCGTGAGGTGGAATATTCTGCCAAAGTTcgcgaaaaaattaaaactcgcaaaaaatttaaaaccattgAAAATGATGATATGAATCTATTAGAggttaaaagtgaattttactTTAATCCAGATGAAAATGATGGGCAGTTAGAGAAAGACGTTTTATGCTTTGACGCATTAGATGTACAAACTTTTGAAGATTGCAAAGAAGTTTCGGATGAGTTAGAAAGTGATGAAGACAATAAGCGgcatacaaaaaaatctagaaaagtAAACCAACGAGAAAAGACTAAACGAAATACTGAACACCATCCTGATGTTAAAAAACcccaaaagaaattaaaacaaaataaggcCAAGGAAGAGCTGCATGCTAACACCATAAGTGAAAACGTTAAATCTGATATTTTCACTGATAATGAACATAAATTGGAATGTTGTATTTGTAATGTAACTCTTGAAGATTTCCGAGCAGTTAAACAGCATTATCGTAATGAACACAATACTAAGGGTTATACCATGTGTTGTggtaaaaagtactttaaacgCTGCTTACTCATCGATCACTTAAGAGTACATAAAGatccaaattattttaaatgcacAGAATGTGCAAAAGTGTTTGCCACTCGCCGAGGCTTGGAAATGCATTTGGAAATACATCAAACCCGCGAACGCAAATTTAACTGTGATGAATGTGGAAAATCGTATTTTAAGCTACACGTCTTTGAACGTCATAAATTAAGCCATGTGCCAGAGAGTGAAAGACACTACAATTGCTCGCAATGTGATAAGAAATTCGCTTCCGATTATTTACGCCGTCAACATGAAGATTTAACGCATGAAAAGAAATATGACAAAATTTGCGATATATGTGGCAAGTCATTTCGTCACCGTTTTTCTTTTGCACGTCACATGGAAGAACACGATGGAACGACGCCCACCTTGGTATCCTGTGAAATATGTGGTGCTAAACTAACCAATAAATACGGTCTACGACGACACATGAAAATGCGACATTTGGAAGAAAATATGCAGGAACAGATATGCCCCTATTGCTCTAGGGTTTCGCCAAATCTCAATGCTCATCGTATGCACATCAAGTACAATCACACCATGCAACGTAAACATGCTTGCCATTTGTGTGAAAAGGCTTTTAGACGCCCTCTGGAGCTGAAGGAACACTTAAGTACTCATACCGGTGAAGCATTGTATACCTGTCCACATTGTCCTCGTACCTTTATATCAAATGCTAATATGCATAAACATCGAAAAATAGCCCATCGTCAGGAATGGGAAGAGGCACGTTTGAGAAAGTTGAATGAAAAGGGTATGAAGTGCGTGAACGTCTCCGAAACTCTGCCCAGTGTTGTGGACGAAATCCAGAAACGTCCAGAAAATCTAGTGTATATAGTGTAG
- Protein Sequence
- MKQTSAHGSPWICRQCWQELSNFHAFYLKVKKVHKQYDLQKWPQLKCSTKDNDEYVSKTIFLYSVKEEFKLIDSTLETTLEEDLVPLDKFKRNIQNNNSAVINENIEINELPIIESVKDEDLPEDSDEDGQSNRVDNDSWDNNLDDNVGNNEITTANRKKETTKKLNLKIDFLKLKTHYRLEHQTLGYAMCCNKKFYNRGPLADHLRVHKNPNYFKCTICQRILAHRLSYENHLEFHKQENKTRERIFRCEKCDKSFFKKAVYDRHILSHVPEEDRKFQCDECDKKFAAEYLVNQHKAFAHLNKYGKICDICGKTFRERFSFTRHMAEHNGKPPEKVPCDICGVELTSKYLLNRHKKKMHTEENQQEQKCPYCSKVSPNMHAHRQHVNYAHTMKRKHACNMCEKKFKRPLELKEHLSTHTGEPLYTCPHCTRTFISSANMHKHRKASHPKEWQESRLKKLNDQKLRELTIKEHLNRCATTNDDVATILECSQENGMQASSGKETSNVNVKQESEREVEYSAKVREKIKTRKKFKTIENDDMNLLEVKSEFYFNPDENDGQLEKDVLCFDALDVQTFEDCKEVSDELESDEDNKRHTKKSRKVNQREKTKRNTEHHPDVKKPQKKLKQNKAKEELHANTISENVKSDIFTDNEHKLECCICNVTLEDFRAVKQHYRNEHNTKGYTMCCGKKYFKRCLLIDHLRVHKDPNYFKCTECAKVFATRRGLEMHLEIHQTRERKFNCDECGKSYFKLHVFERHKLSHVPESERHYNCSQCDKKFASDYLRRQHEDLTHEKKYDKICDICGKSFRHRFSFARHMEEHDGTTPTLVSCEICGAKLTNKYGLRRHMKMRHLEENMQEQICPYCSRVSPNLNAHRMHIKYNHTMQRKHACHLCEKAFRRPLELKEHLSTHTGEALYTCPHCPRTFISNANMHKHRKIAHRQEWEEARLRKLNEKGMKCVNVSETLPSVVDEIQKRPENLVYIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -