Lcup004881.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- -
- Assembly
- GCA_001187945.1
- Location
- JRES01001701.1:1248019-1281741[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.00027 0.018 15.1 1.4 2 23 248 269 247 269 0.97 2 27 7e-06 0.00047 20.2 0.3 2 23 278 299 277 299 0.97 3 27 6.5e-05 0.0043 17.1 1.2 1 23 307 329 307 329 0.98 4 27 8.9e-05 0.0059 16.7 0.3 2 23 335 356 334 356 0.96 5 27 2.8 1.8e+02 2.5 0.4 2 23 374 394 373 395 0.76 6 27 0.38 25 5.2 1.1 2 14 401 413 400 416 0.88 7 27 4.6 3.1e+02 1.8 0.9 3 23 603 623 601 623 0.82 8 27 0.01 0.7 10.2 0.2 2 23 632 653 632 653 0.97 9 27 2.3e-06 0.00015 21.7 0.5 2 23 662 683 661 683 0.98 10 27 1.3 90 3.5 0.5 2 19 693 713 692 716 0.61 11 27 0.0088 0.59 10.4 0.2 1 23 942 964 942 964 0.95 12 27 4.9e-05 0.0032 17.5 0.4 2 23 973 994 973 994 0.97 13 27 0.00011 0.0073 16.4 0.6 1 23 1002 1024 1002 1024 0.99 14 27 0.00046 0.03 14.4 0.2 2 23 1030 1051 1029 1051 0.96 15 27 7.9 5.3e+02 1.1 0.1 2 13 1068 1079 1067 1088 0.81 16 27 0.00087 0.058 13.6 0.9 2 23 1095 1117 1094 1117 0.97 17 27 3.9 2.6e+02 2.1 0.3 1 23 1352 1374 1352 1374 0.94 18 27 0.00071 0.047 13.8 2.2 2 23 1383 1404 1383 1404 0.98 19 27 1.2e-05 0.00079 19.4 0.8 1 23 1412 1434 1412 1434 0.99 20 27 0.0011 0.075 13.2 0.2 3 23 1441 1461 1440 1461 0.96 21 27 0.2 13 6.1 0.3 2 23 1478 1498 1477 1498 0.85 22 27 0.12 7.9 6.8 4.4 2 23 1505 1527 1504 1527 0.95 23 27 1.2 78 3.7 0.1 1 23 1745 1767 1745 1767 0.95 24 27 3.9e-05 0.0026 17.8 0.4 3 23 1777 1797 1776 1797 0.97 25 27 0.0015 0.1 12.8 0.6 1 23 1805 1827 1805 1827 0.99 26 27 0.00078 0.052 13.7 1.4 3 23 1834 1854 1832 1854 0.96 27 27 0.062 4.1 7.7 0.6 2 23 1898 1920 1897 1920 0.96
Sequence Information
- Coding Sequence
- ATGAATTCTTCGGAATTTAAAGATACAGTTTGTCGCATTTGTTTGGATGAAAATATAGCTTTAGATTGGAATAATACATTGACTGAACATGGCGATATAACATACAAAGATTGTTACTACAAATATACACAATTGGAATGCATTGaaactgATCCTTTTTCCTGTATGTTATGccaaaaatgttcaaatggcttaaaatatatacacaatttaattttaaaagctttagatTCCTATAACTTCCTGCTGGATGTAAATAGCATTCATAATGAAGTGGATATTTATAGCCAAGATGACCCTGTGTTCATTGAGGATATAACAAATATTGCAGAAAAAGATGTAAATTGTGATTCAACTAATTTTGAAACAGTTCTAGTAGAAAAAATCGATACAGAATCCGTTGATTATTTTCATAGTGAACATTCGGATGATAATGATATGATATACAATTATTCTACTGTAGAAATCCAAAGATCTTTTGACACTGAAAATAATGAGGAATGTGATATTGATTTAGCTTTAAAAACAGAGTATTCAGAATGCGAGGAGCCACTATCCACGCAAGGAGCGTGTGCCATAactaaaggaaaaaataatacCTCTGGTAACCAGTGCAAAAGCAAAACAgtgaaaaaatgccaaaaatctCCAAGAAAAGGtcgttttaaaaaagtaacttCTGAAACTGATGCATTTGATGACCAAaatctaaaaatgaaaaataaatatgatacgCCGAGTATGTGTTCTATATGCTCTaagattttaaacaacaaatatacattgCAAAAACATGAAAGAACACATGCCGTAAATCGTGAACGTAAGGTTTCTTGTCCTGAATGTGGCGTtaaatttttcgacaaaaattaTCTCAAATCTCATATGCGAATTCACAATGAAAATCGAATAAAGAGACATAAGTGTGAATTTTGCGGTAAAGCCTTTTTTGAGAAGGGTGGACTCAATGTCCACAGACGTATACATTTGGGTCAAATGATACCCTGCACTTTGTGTTCAAAAGAATTTTTCCGCAAAGTCGACTTGGAAATACACATGAATTCGCATTCAGCGGTATCGATAAATTCAAATGGTAAAAAGAGGtccAGATACTGGGTGCGCTGCAAGTATTGTGATAAAAACATTCTAAGCACCAGTTTTAAATCTCATACAGCCGCTCACTTAAATGAACCTTTAATGAAGTGCACTATATGTGATAAGGAATTTTTCCGAAGAGATTGGATTTGTTTGGATGAAAACGTTGTTTTGAACTGGAATAATATGTTATTTGATTACTATGGGATAACTTACAAAGAGTGCTACTACAAATACACCCAATTGGATTGTAatgATCCTGATATATTCCCCTCAATGTtatgtcaaaattgtttaaatggtTTACAAAATATCCATACTCTTATCTTAAGAGCTATAGAATCgcataaatattttgaagaaacACATCTCATCAATTTAGAAATAGAGGAAGACCAATGTCAAGATGTAATTGATATTAAGTGTAATCCAACAGAATTCGAAACTGTATTAATGGACGAACAAATAATAGATGAAACAAATGAACAAcacaaaaatttcgaaaaatctgttaaagataaaataaaatctgttgATTTGGATAGCACTGACGATGAAAGTATTGCAgcTGTGGATAACAATGAAAAACGAATTTCACCAGATGAAAACAAAGACAAACCAAAAGATAGAAAAaccagtaaatttaaaaataactgcaAGAGTATTAAAAACAAGAAGGATCGTATAAAGCAAAAAGATCAAAAAATTATATGCTCTGTTTGCTCTAGAGAATTCGCCAATAAATGTATAGCAAAAAAACACGAAGTGACACATGCTAAAAATAGGGAACGTAAAGAAACATGTGAAATTTGTGGTCTTAAGCTCTATACTAGAAATAGTCTTCTTCAACACCTGGAAATACATGATAAAAATCGTGAAAAGACACAGAAGTGTGAATATTGTCCGAAAGCCTTTTATAGAAAAGGAGAACTTAATATACATCGGCGCATACATTTGGGACAAATGtcaaaatattttgtacgcTGTAAGGATTGTGGCAAAAACATACTTAGTACAAGTTACAAATCTCATAAAGCTGCTCATCTAAAAACTCCTCTAGTCAAATGTTCCCTCTGCAATAATGAGTATTACAGTCGAAGCagaaatataatgGAACCGTCGAAATTCAATCAAAATATATGCCGTATTTGTCTGGAAGACAATGTAACTGTAAACTGGAACGAAGAAATTGAAATATCATGTGGTTTCAGCTACAAAGATTGTTACTACAAATACACAAAGATACCGGAAGATGatacaTATCCTTTACCAATAAATTTATGTGCAAAATGCTGCAGTGGTCTTAAAAATGctcatttattatttgaaaaagcaTATGAATCATATAAAAATCTCTGTGATGATCTCTTCGCAATAGAATTAGAAAGTGATTTGGTGAATGGTGaaacaatgaaatttaaaataaagtttattgatGATCGTGATTTTAGTGATAGAATTGAGCAGGATACTCTGACAAATGATGCAACAATTACGAATGTAGAAGAGGAATTGTTGGACCACACAAGTGATTACGATAATGAACAGAATGACAGCAccgaaaataatatacataatagTATTACTAGAGAAATTAAAATGAGTGAAGAcgaaacaattgaaaatttaccaAAAGACAAAATGACTTCCGGTCAAGAGTTTTCCAAAAGTTCTTATTCAAACCTTTCAGCCTCATCGTCTGCTagtaaaaagagaaaacaaaagaaatatttgtgtgcATATTGCTCTTTAGTAGTCAACGATAGATCATCTCTTAAAGTTCATGAATCTACACACAGTGAAAATAGAAAACGTAGTGAAACCTGTCCCCAGTGTGGACTtaagttctatacaaaaatgGCATTGAGAAATCATATGGACATTCATGCACAAAATcgtgaaaagaaatttaaatgtgaattttgtGTTAAAGCCTTTTTTAATCGAGGAGCCCTTAATGTTCATAGGCGTATACATCTGGGCCAGATGATACCGTGTAAGCTATGTCCAAAAGAATTCTATCGACAAATTGATTTAGACAAACATTTGGCAAAACACTCAACAGCTCCTCTGCATAAAAAAGCTGAAAAGtcCAAATATACAGTACAATGTCAGTATTGTAATGAGACAGTTGCCACTGCAAAATGGAAGACACATAAAGCTATTCATCTCAATCAACCTCCGGTGAAGTGTAAAGTTTGCGACAAAGAATTCTTTTCTAGAGACAGgGTAGTACGACATTTAAGAAAAGTACATGGTAAAACTATAGAGGAATATGATGAATTTATTGAATATCTTGATTCAAACATACGTATGTCGCACTTAATgatacaacaacaagaaatagtAGACGAAATGAATTTAAGTAATAAAGGTTGTCGCATTTGTCTTAAGGGCAAGGTATTATTAAACTGGAACGAAGAAATTGACGACATCTCTGGTATGACATACAGAGATTGTTACTACAAATACACAGAACTGCAGTCAAttgatTCAGATCCTTTGCCACCGAATTTATGCAGAACATGTTGTAGAGGTCTTAAAAATGCGTACCTATTATTTCAAAAAGCTATAGAATCATTTAATATACTACATAATACTCTTAAAACTCCTGAATTAAAACCAATATCATGTGTGAAGGAGGAAATATCAATGGAAtttgaacataaaatattggGCGATTataatttagataatttaattaatgaagATACTATTAAGGATAAAAACCtggaagaagaagaagaagaagagtcCAATTCTATAAATTATGACAGTAATAACGAAATATCTTCACAAAATGAAGAAGAAATAGCACCAGTAGATTTTattgacataaaaaattatgaatcatCAGCGGAAGACTTATTGGAGGAAAGGACAAATGCAGATTCTAATACAGAATCTGCTGTGGACTCAACAAGTAAAAAGGCTGTCAAAAggaaaaaacagaaattatacATGTGTGCATATTGTTCTTTAAAAGTCGAGcacaaaaatattctaataaggCATGAAGCAATACACAACAAAAATAGACAGCGCACTGAAACGTGTCCTCAttgtaaacttaaattttacaataaattggGTTTAAATAATCACATCAAAATACATGATGTAAATCGCGAAAAGAGATTTAAGTGTGAATTTTgtgataaagctttttttaaccgAGGTGGACTTAATGTTCATAGGCGTATACATCTGGGTCAAATGGTAGCTTGCAAACTTTGTCCAAAAGAATTCTATAGACAAATTGATTTAGACAGACATCTGTTGGGACATTCAGCAGGTCCTCTGCAAACAAAAGTTTCAAagGTAAAATACGAAGTACAATGTCAATATTGTGATAAGTCGGTTAACTCTGCAAAATGGAAACAACATAAAGCAGCTCATTTGGGTCAACCTCAGGTGAAATGTAAAATTTGCGAAAAAACATTCTTTGCcaagaaaaaTTGcactaaacatttaaaacaggtACATCAGAAAACCAGGGATGAATATGAACAATTTATACATTACTATGTTGTTTATACTCAAAGAATGTCGCATTTGATGAttcaacaacaagaaaaagtacaattagaaaatatatgCCGCATTTGTCTGGAAGACAATGGAACTCAAAACTGGAACgaagaaattgaaatattatgCGGTTTCAGCTACAAAGATTGTTATTACAAATACACAGAGTTACAGGCAGATGattcaGATCATTTACCAACAAATTTATGTGCAACATGTTCCAGTGGTCTTAAAAATGctcatttattatttgaaaaagcttttgaatCATATAAGATTCTTAACGAGATGATCTTTACTATAAAAGAAGAATGTGATGTGAGTATTGGGAGTAAAGAAACcacaatgaaatttgaaattaatgttattgatgATTATGATACTACGTCAAATGATACGACATATACAGATATCGATGAAGAATTAATGAACGCTACAAATGATAACGATAACGAACAGGATGTTAGCACAGAATATTCTATAAACaatagtatttttaaagaaattacaatgAGTGAAGGCGAAACTATTGAGAATCAATCTGAACAAGAATATAGCGAAAGTTCTGCCTCATTAAATAcggttaaaaagaaaaaattacaaaaatatttatgtgcatATTGCTCATTAGAAGTCAAGGAGTTAGCCTCCCTTAAACTTCACGAATCTACACATTGTGAAAATAGAAAACGTACAGAAGCCTGTCCCCAGTGTGGACTtaagttctatacaaaaaattcattaagaACTCACATGGACATTCATGCTAAAAATcgtgaaaagaaatttaaatgtgaattttgtattaaagcattttttaatcGAGGAGCACTTAATGTTCACAGACGTATACATCTTGGTCAGATGATAGCTTGTAAACTATGTTCAAAAGAATTCTGCCGACAAGTTGATTTAGACAAACATTTGGCGAAACATTCAACAGCCCCTCTACATAAAAAAGCTGAAAagTCCAAATATACTGTACAATGTCAATATTGTAATGAATCGGTTGCCACCACAAAATGGAAGACACATAAAGCTATTCATCTCAATCAACCTCCGGTGAAATGTAAAGTTTGTAACAAAGATTTCTTTGCTAGAAGCagGGTAGTTGAACACTTAAGAAGAGTACACGGTAAAACTATAGAGGAATATGATGAACTTATTGAATATCTAAATCCAAATATACGCATGTCCCATTTAATGATACGACAACAAGAAACAGTAGTACcaattttagaataa
- Protein Sequence
- MNSSEFKDTVCRICLDENIALDWNNTLTEHGDITYKDCYYKYTQLECIETDPFSCMLCQKCSNGLKYIHNLILKALDSYNFLLDVNSIHNEVDIYSQDDPVFIEDITNIAEKDVNCDSTNFETVLVEKIDTESVDYFHSEHSDDNDMIYNYSTVEIQRSFDTENNEECDIDLALKTEYSECEEPLSTQGACAITKGKNNTSGNQCKSKTVKKCQKSPRKGRFKKVTSETDAFDDQNLKMKNKYDTPSMCSICSKILNNKYTLQKHERTHAVNRERKVSCPECGVKFFDKNYLKSHMRIHNENRIKRHKCEFCGKAFFEKGGLNVHRRIHLGQMIPCTLCSKEFFRKVDLEIHMNSHSAVSINSNGKKRSRYWVRCKYCDKNILSTSFKSHTAAHLNEPLMKCTICDKEFFRRDWICLDENVVLNWNNMLFDYYGITYKECYYKYTQLDCNDPDIFPSMLCQNCLNGLQNIHTLILRAIESHKYFEETHLINLEIEEDQCQDVIDIKCNPTEFETVLMDEQIIDETNEQHKNFEKSVKDKIKSVDLDSTDDESIAAVDNNEKRISPDENKDKPKDRKTSKFKNNCKSIKNKKDRIKQKDQKIICSVCSREFANKCIAKKHEVTHAKNRERKETCEICGLKLYTRNSLLQHLEIHDKNREKTQKCEYCPKAFYRKGELNIHRRIHLGQMSKYFVRCKDCGKNILSTSYKSHKAAHLKTPLVKCSLCNNEYYSRSRNIMEPSKFNQNICRICLEDNVTVNWNEEIEISCGFSYKDCYYKYTKIPEDDTYPLPINLCAKCCSGLKNAHLLFEKAYESYKNLCDDLFAIELESDLVNGETMKFKIKFIDDRDFSDRIEQDTLTNDATITNVEEELLDHTSDYDNEQNDSTENNIHNSITREIKMSEDETIENLPKDKMTSGQEFSKSSYSNLSASSSASKKRKQKKYLCAYCSLVVNDRSSLKVHESTHSENRKRSETCPQCGLKFYTKMALRNHMDIHAQNREKKFKCEFCVKAFFNRGALNVHRRIHLGQMIPCKLCPKEFYRQIDLDKHLAKHSTAPLHKKAEKSKYTVQCQYCNETVATAKWKTHKAIHLNQPPVKCKVCDKEFFSRDRVVRHLRKVHGKTIEEYDEFIEYLDSNIRMSHLMIQQQEIVDEMNLSNKGCRICLKGKVLLNWNEEIDDISGMTYRDCYYKYTELQSIDSDPLPPNLCRTCCRGLKNAYLLFQKAIESFNILHNTLKTPELKPISCVKEEISMEFEHKILGDYNLDNLINEDTIKDKNLEEEEEEESNSINYDSNNEISSQNEEEIAPVDFIDIKNYESSAEDLLEERTNADSNTESAVDSTSKKAVKRKKQKLYMCAYCSLKVEHKNILIRHEAIHNKNRQRTETCPHCKLKFYNKLGLNNHIKIHDVNREKRFKCEFCDKAFFNRGGLNVHRRIHLGQMVACKLCPKEFYRQIDLDRHLLGHSAGPLQTKVSKVKYEVQCQYCDKSVNSAKWKQHKAAHLGQPQVKCKICEKTFFAKKNCTKHLKQVHQKTRDEYEQFIHYYVVYTQRMSHLMIQQQEKVQLENICRICLEDNGTQNWNEEIEILCGFSYKDCYYKYTELQADDSDHLPTNLCATCSSGLKNAHLLFEKAFESYKILNEMIFTIKEECDVSIGSKETTMKFEINVIDDYDTTSNDTTYTDIDEELMNATNDNDNEQDVSTEYSINNSIFKEITMSEGETIENQSEQEYSESSASLNTVKKKKLQKYLCAYCSLEVKELASLKLHESTHCENRKRTEACPQCGLKFYTKNSLRTHMDIHAKNREKKFKCEFCIKAFFNRGALNVHRRIHLGQMIACKLCSKEFCRQVDLDKHLAKHSTAPLHKKAEKSKYTVQCQYCNESVATTKWKTHKAIHLNQPPVKCKVCNKDFFARSRVVEHLRRVHGKTIEEYDELIEYLNPNIRMSHLMIRQQETVVPILE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -