Lcup000214.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- -
- Assembly
- GCA_001187945.1
- Location
- JRES01000755.1:518539-525902[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.1 1.4e+02 2.9 1.6 1 23 248 271 248 271 0.85 2 18 0.031 2.1 8.7 3.6 1 23 278 301 278 301 0.96 3 18 0.00019 0.013 15.6 1.1 1 23 309 332 309 332 0.94 4 18 0.019 1.3 9.3 0.4 3 23 343 364 341 364 0.94 5 18 1.2e-05 0.0008 19.4 0.5 2 23 371 393 370 393 0.91 6 18 4.8e-06 0.00032 20.7 2.8 1 23 401 423 401 423 0.99 7 18 0.14 9 6.7 0.6 2 23 431 455 430 455 0.94 8 18 0.03 2 8.7 1.5 1 23 461 483 461 483 0.95 9 18 1.4e-05 0.00091 19.2 1.3 1 23 489 511 489 511 0.99 10 18 0.00079 0.053 13.7 3.9 1 23 928 951 928 951 0.98 11 18 0.00053 0.036 14.2 0.2 1 23 958 981 958 981 0.96 12 18 0.0011 0.077 13.2 0.7 1 23 988 1013 988 1013 0.93 13 18 1e-07 6.9e-06 25.9 1.3 1 23 1022 1045 1022 1045 0.98 14 18 0.00051 0.034 14.3 3.1 2 23 1063 1085 1062 1085 0.95 15 18 0.00029 0.02 15.0 0.2 1 23 1091 1113 1091 1113 0.98 16 18 5.6e-05 0.0037 17.3 0.1 3 23 1120 1141 1118 1141 0.95 17 18 2.4e-05 0.0016 18.5 4.0 1 23 1147 1169 1147 1169 0.98 18 18 9.4e-06 0.00062 19.8 1.1 1 23 1175 1197 1175 1197 0.98
Sequence Information
- Coding Sequence
- ATGATGTTATCTGTGGAGCATTTGCGACAATATTGTCGTACCTGCCTAGCCAAGTTGGAGGCGAATAATGAAGATAATTCTACAACATTTATTCCCACAAATAAGTACCCAGAACTGGAGAATTTAATACAAGTCTGTCTTGCAAGGACTACCGCAGGTGACGATAGTTTGTGTTATTATGCACCATTTTTGTGTCGCTCTTGTTTCGATAAATGGTTAGATTTTTCAAAACTTCACCAATTGGCTATTGAAACTGACGAAAAAATAAGGAAGATTTTAGAAAGAGAAGTTCTTAAAAGCGATAACAAAGACGACGAGGCAAtggttataaataataaacaaaatgaacatatTAAGGAATTTCTAACGGATAACGAATCTTTAGTTGATATAAAtgagataaaaaaatatgaaacaaattcCACATTTGTACTCAATAGTCATTCAGATTCTCCAATCAATAACTGTTCCCGATCGGATGAAGAATTTACCTTTGGAAAACTTAATATAACATCCAAAGATTATGAAGACATTGATGTTCACTGCTCCTCCTCCGATAACGCAGATGATACTGATTTTATACCTATCGCACCACTGCACGACGAAGgcttaaaaagcaaaaattctcaaatcaaTAAGAAtaggaaattttgtaatttaaagaaaacctaCAAAAGAAGACAAACATTtgtagaatataataaaaattcggAAGTGGATAGTGGACAAAAAAAAGTGCGGTATGAATGTAAAACATGCAGCAAATATTTCTGGGAAAAGAACAAGTACGATGGACATATGAAACAAGTACACGAGGGCATCAAACGTCCGTATCAATGTCTGCAATGTGATAAGGCTTATAATCTATACAAAACACTTTTACAGCATAAACGTGAGTGTCATAGCGAAAAGTCGCAAGAAGTATTCAAATGTGAAAAATgtgataaaacatttaaaacagctGTAATTCTTAAACAACACTTGGCTAACAAGCATTCCGAACAAAAAGAGACCACGCGATCGATTTGCGATCAGTGTGGTTTTATTGCAGCTCATCAATATTCGCTCTCGCGGCATATTATTAATAAGCATACGGAAACAGACCAAATAAAATGCGACTATTGTCCCAAAGTTTTTAAAACGCGGTACTCACTTAAATATCACGTGATAGGCAATCACAACCCTTCGAATTCAAAGCCCTTCAAGTGTTCCGAGTGCCAAATGGCATTTACACGTAAAACACTGTTGAACCAACATAAACGAACTCATATCAAATACACAGAACGTATTAAATGCGACTTTGAGGGCTGTGAGGTGCGTTTCGTTAAACTTGGCGATAAAACTCACCATATGCGGTTGGTacatttaaaagttaaacaacaTGTTTGTGATTTTTGTGGCGAGGCATTTGGTGCCTTGCAAACACTGCGTCATCACCGATTTATACACACCGGTGAGAAACCTTATAAATGTAATGTTTGTGGTCAAGGTTTCCGGCAACGTACCGCTATGAAAACTCACAGAAAGATACATTTTGGAAAAGGCACAGAAGGTCatgatattattaataatttaccaGAAATTAACTTAAGCTTAGTAAATACAGTAAATGAATTAATAATGATAACATTAACGAAACTTAACGCAAAGGAAAGGTGTCGCACCTGTTTGTGTAAACTTCTAAAAGATGAAAGTAATTCAAGCGATTTTGACAATATAGTGACATCGTTCCCAAACAAGTTTGTCGACATCAATGTAAATAAGCATTTACAAGAGATGCTGGAAAAATATGTGTCCTTGGGGTGTGAAATGGATTTGTGCAATGAACAATCGTACCCGCAATATGTATGCATAGAGTGCTTGAAGCACTTGGAAACGTTTGATACGTTTCGAAATAAGGCGTTGGATAGTgctaaaaaactatataaagtaTTCAGTGACAATTTCAATGTtgctaaaatagaactgaacgaTGATGGACTCGAATTCAAAGACAATAAAACGGATCAATTAAATGTTTGCGTCAAAGAtgacattttcaatttatttctGAAAGATTCTTTGATGGAGACCGAAGCAATTATTCTAGGTAGCACCGATAacaataatgattttaatagtatggatcctgatccattccaaaacacacaaaaacaagaTCATTTGAGAAAACCCAGACCACGGAGGGCTAAAGGGAAAATCTATACCCTTCCCAATAGTAAATTAAGccgtaaatgtaaaaaatctaatGGCATAGAAGAAAGTGAatcgataaatttaaatttgaaaggaGTAACAACGAACTTAGAGCAAAAAAATAGAACGGAAATATGTCAGACGGAAAAGGAGGATATCGACTCGCAAGATTGTACGTTTCAAGATGCAGATGATAATTTGTCCGATAATGAAGTGTTAagtaataaaattcaacattccGAAAGAGCAGCCAGGGAAAGGCAACCGAAACTAAGAAAATGTAATATTAAACCAAATGATGAGAATACATTTTCGAACAGTGAATTTCGATTTGAGTTAAAGGAGTGTGaagaaaatactaaagaaaactcaaaagaaAGTAAACCCAAAAGTTCAACATATATAAAGAACGTCGAGTGTGAAAAGCAACATTCAGAAGCTataaaaactgaactgaactctGGTTGTGAATCATCAAGCGACGGTGaattcaatacaaatacacTGCCAAATATAACCGAggcgaaaaagaaaaaaagacacTATATTTTAAATAGCGGTCGAAAGAAAGGTCTGGCTAATAGATACAAGTGTGATCAATGTCAGCATAAGTTTGGTCATAAGCTTACCCTTGAGGCACACATCCGTAAAGTACATGAAGGACAAAAGAAGGCGTTTAAATGCCAACTTTGCGATAAGGCATATTCGTTTGTAGGAGGGTTGTCAACTCATATTAGAGACGTACACGAAAGGAAGCAGGATTCGTACGATTGCAGTATTCCGGGATGTGATAAAAAGTATAGCAACTTTATTACATTGCAACGTCATGTGCGTTTTAAGCATCTCAATATGGAAACAACTCATCAATACGTATGCGAACAATGTGGAGCCACATTTAAACAGAGTTCAAATTTACGCTACCATATGAAAACTCGACATCCGACTGAAGAGGATTTGAGGCGGAAAGAACTGTTGCCTAAAGATAGATTGGAATGCGAGGAATGTAAAAAGTCGTTCCATTCTCAATATACCCTTAAATACCACAAATTACGGGTACATGCAGACGAGAAAAAATTCGAATGCAAAATTTGCGGACGTCGGGTTGCAAAACAGTTTATGTTAGACTCACACATGTTGGTACACTCCGACCAGAAACTGGCGTGCAAGTTCTGCGGTCGAGAGTTCGTTCGCAAATATCAGGTCGAAGCTCACATTAGAGCAGTTCATCAAAAACTAAAACCTTTCCAGTGCCCCCATTGCAGTGAAAGCTTTGCTTCACGTAAAACTTTACGCCATCACATCTATATACACACTGGCGAAAAACCATACGTATGCGATATTTGCGGGCAGGCATATCGTCAAccaacttgtttaaaaaatcatCGTAAAATTCATAACAAACTTACTGCAAGTGATGCGGCCCCTGCTGTAGCCGCTAATCGCAGTTTCATAGATAACTTTGTTGAAAACAATGATGATGCGCTGGAGCAGAATTAA
- Protein Sequence
- MMLSVEHLRQYCRTCLAKLEANNEDNSTTFIPTNKYPELENLIQVCLARTTAGDDSLCYYAPFLCRSCFDKWLDFSKLHQLAIETDEKIRKILEREVLKSDNKDDEAMVINNKQNEHIKEFLTDNESLVDINEIKKYETNSTFVLNSHSDSPINNCSRSDEEFTFGKLNITSKDYEDIDVHCSSSDNADDTDFIPIAPLHDEGLKSKNSQINKNRKFCNLKKTYKRRQTFVEYNKNSEVDSGQKKVRYECKTCSKYFWEKNKYDGHMKQVHEGIKRPYQCLQCDKAYNLYKTLLQHKRECHSEKSQEVFKCEKCDKTFKTAVILKQHLANKHSEQKETTRSICDQCGFIAAHQYSLSRHIINKHTETDQIKCDYCPKVFKTRYSLKYHVIGNHNPSNSKPFKCSECQMAFTRKTLLNQHKRTHIKYTERIKCDFEGCEVRFVKLGDKTHHMRLVHLKVKQHVCDFCGEAFGALQTLRHHRFIHTGEKPYKCNVCGQGFRQRTAMKTHRKIHFGKGTEGHDIINNLPEINLSLVNTVNELIMITLTKLNAKERCRTCLCKLLKDESNSSDFDNIVTSFPNKFVDINVNKHLQEMLEKYVSLGCEMDLCNEQSYPQYVCIECLKHLETFDTFRNKALDSAKKLYKVFSDNFNVAKIELNDDGLEFKDNKTDQLNVCVKDDIFNLFLKDSLMETEAIILGSTDNNNDFNSMDPDPFQNTQKQDHLRKPRPRRAKGKIYTLPNSKLSRKCKKSNGIEESESINLNLKGVTTNLEQKNRTEICQTEKEDIDSQDCTFQDADDNLSDNEVLSNKIQHSERAARERQPKLRKCNIKPNDENTFSNSEFRFELKECEENTKENSKESKPKSSTYIKNVECEKQHSEAIKTELNSGCESSSDGEFNTNTLPNITEAKKKKRHYILNSGRKKGLANRYKCDQCQHKFGHKLTLEAHIRKVHEGQKKAFKCQLCDKAYSFVGGLSTHIRDVHERKQDSYDCSIPGCDKKYSNFITLQRHVRFKHLNMETTHQYVCEQCGATFKQSSNLRYHMKTRHPTEEDLRRKELLPKDRLECEECKKSFHSQYTLKYHKLRVHADEKKFECKICGRRVAKQFMLDSHMLVHSDQKLACKFCGREFVRKYQVEAHIRAVHQKLKPFQCPHCSESFASRKTLRHHIYIHTGEKPYVCDICGQAYRQPTCLKNHRKIHNKLTASDAAPAVAANRSFIDNFVENNDDALEQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -