Lcup002044.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lucilia cuprina
Gene Symbol
-
Assembly
GCA_001187945.1
Location
JRES01000586.1:159748-163103[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.021 1.4 9.2 2.0 1 23 137 160 137 160 0.97
2 13 3.6e-05 0.0024 17.9 1.4 2 23 166 188 165 188 0.97
3 13 5.5e-07 3.7e-05 23.6 3.4 1 23 197 220 197 220 0.97
4 13 3.9e-06 0.00026 21.0 5.0 2 23 473 494 473 494 0.98
5 13 3e-07 2e-05 24.5 3.2 1 23 500 523 500 523 0.96
6 13 9.4e-05 0.0063 16.6 2.1 1 23 528 551 528 551 0.98
7 13 3.3e-05 0.0022 18.0 1.2 1 23 562 584 562 584 0.95
8 13 0.00035 0.024 14.8 4.1 1 23 589 612 589 612 0.97
9 13 1.8e-05 0.0012 18.9 0.8 1 23 618 640 618 640 0.96
10 13 8.1e-05 0.0054 16.8 1.9 1 23 646 668 646 668 0.98
11 13 4.1e-07 2.8e-05 24.0 1.6 3 23 676 696 675 696 0.99
12 13 2.9e-07 1.9e-05 24.5 0.3 1 23 702 724 702 724 0.99
13 13 0.00099 0.066 13.4 0.2 1 23 729 752 729 752 0.98

Sequence Information

Coding Sequence
atggaaataatttataactcgcaaaattataataaaaataacatttgccGTATTTGCATGCAGGAAGATGGCAATTTATATcccatatttaaagaaatattcctTGGCAACAGAACCACCACTATAGCTCAGATAATTACCGAGTGTACAAAATATCCAGTGACACACAATGACCAGCTACCAGCACAAATATGCAATGCCTGTATGGAGGCGGCCCGCAACGCCCATCAATTTAAAAGTCAAACCGAGGAGGCCTACTGCCAGCTAAAGGCGTTGTATGATATAACATGGATTCCCAAACAGGAGAAGGGTAATGTTAGTGGTTGTATTAGAAGTGAGGCGGCAGCAACGGTGAGGGTGAGTGCCCTCACCACAGACAAGTATACACAAACTGAAAAAAGCACAGTATTTCAGTGTGAGTGTTGCccgaaaaagtttttcattgaaTCGGAATTAAGGCAACATCGTGCCACCATCCATGTAAATGATGCCAAAAAATGTCGTGTTTGCGGTGAGACCTTTAATCATTTAGGTCAATTGAAGGTTCATTTATCCACAGAGCATCCCAGCGAGGGTATACGTTGTGATTTTAAGTGTAATATATGTTCGAGAGAATTTACACGCAAGGACCATTTGAAAAGGCATTTAATACGGGTACACAAGATCGAAGatgataaattaaatatTTCCAAAGTATCGCTGGATGAACCGGAAATTGAAAATCCTCCTCAACTATCTGCTAGCTTAAATAACTACAGCAGTCATTGGCCCGATTATCAAGAAGATGATGACAACGAAGCTACTGCGCCAAATGAAACAATGGCCGCTACAAATCCTTTCTCGAGTGAAGATGAAGGTCTCGAGCATCACAATTTCAATGATATGGATGAAGAAGATGTTAAGCAATTTGTAGAAACTATAGCCCATCCAGAAATATCCATTAAAGTTGAAAATCCCGATTACACTGACAATATTTCAACCAGCATAACTAAACAAGAAAAACTAGCAAAAAGTATCAATCTTTCAAATGAAACTACATTAAAGCCAGAGTTAGCAgaggaaaatatagaaataaaagaaaatgctaAAGAAAAGGAGGACGAGGAGGAGGAGGAGCAGGAAGAAGAGAATATAGATAATCTTAATACATCTTATCAAGAGCATCATAGTAATAATACAAGTGATGAAGATACAGATGAAGATTACCAACATAGCAGTGATGATGAGGATCAGGATGACAAAttcgaaattacaaaaaaaccgCCTAAAGACAACTTAATGACTGATGTTAAACAGGAACAGGATAATGAAAAACAAGACATTGCTACTAGTTCTAAGgataaacttaaaactaaacttaaggCAAATACAAAAACACCCCGACGACGACATGGTTCCACTAAAAATGAAGATAATCGTTGTAAGGAATGTAATCGAACCTTTACCCGTTACAATCATCTTCTACGCCATATGCTAACACACAGTGATGAAAAGCCacatgtttgtaatttctgtggcAAAGGATTTTCACGTTCAGatcatttacaaaaacacatacagaGTATACATTGCGAAAAGAACTATAAATGTGATCAGTGTTCGAGTGCTTACGGACGCAAGGATCATTTGCAGCGGCACATCGAAACGCGTCACAATAAAGATCCCACCATACAGAAACCTCAATTCGATTGTGATATGTGTGAGAAGAAGTTTACCACCAAGGCCTATTTggcaaaacataaattattgcATACCGATCGTCTGTATGCTTGCAAACATTGTTCGGAAACCTTTACCGAAAAGGAACAAATGAAAGAgcatcaaaagaaaaaacatgccCAACCGCGTAATTTCCTGTGCAATATTTGTGGTGATTCGTTTCAGCGTAATGAATATCTTAAGATACACATGCGTCGTCATACCGGAGAGAAACCGTATAAATGTCGTTTTTGTGAAAAAGGTTTTCCGCGCAGTACCGATTTGAAAATGCATGAAAGATATCATATAGGCCACAAACCTAATTTGTGTAATTTATGTGGCAAAGGTTTTCATCGTCCCTACAATCTAACCATACACATGCGCACGCATACCGGTGAAAAACCCTATAAATGTAATCAATGTCCTCAGGCGTTTGCTCAAAGTAATGATCTGAAAGCTCATATAAGACGTCATACCGGAGAACGTTTTCGTTGTGATATGTGTAGTGCAGCATTTTTGCAACGTTATGGTTTAAATGCTCATTTAAGAACTGTACATGGTATTATTGTTACCTCATTTACGGGGCGTTTACGTAAAACCGAACAACCTATAGATGGAGGCGGAGGAGGTGGAGAACAACTTGATCAAACAACAACAGCGGCTGTAGTGACAACACCAACCACACAACAATTAGCCCCTGCACAACAAGAACAGTCGCATACATCGTTGTCATCTCCTCATATAGACAGTACTATAACACCACCGCCTTTGTATTTAGGTCATCATTTCATAGCACCAACAGTTGGTAGCACATCAACATCTCCCCCCATTGATATATCATCTACAAGTGCTACTACGTCGTCGTCGTCATCGTCGTTGCCTCCACTTCCATTAGCTCATCCTTCAGCGCAACAAAtgtaa
Protein Sequence
MEIIYNSQNYNKNNICRICMQEDGNLYPIFKEIFLGNRTTTIAQIITECTKYPVTHNDQLPAQICNACMEAARNAHQFKSQTEEAYCQLKALYDITWIPKQEKGNVSGCIRSEAAATVRVSALTTDKYTQTEKSTVFQCECCPKKFFIESELRQHRATIHVNDAKKCRVCGETFNHLGQLKVHLSTEHPSEGIRCDFKCNICSREFTRKDHLKRHLIRVHKIEDDKLNISKVSLDEPEIENPPQLSASLNNYSSHWPDYQEDDDNEATAPNETMAATNPFSSEDEGLEHHNFNDMDEEDVKQFVETIAHPEISIKVENPDYTDNISTSITKQEKLAKSINLSNETTLKPELAEENIEIKENAKEKEDEEEEEQEEENIDNLNTSYQEHHSNNTSDEDTDEDYQHSSDDEDQDDKFEITKKPPKDNLMTDVKQEQDNEKQDIATSSKDKLKTKLKANTKTPRRRHGSTKNEDNRCKECNRTFTRYNHLLRHMLTHSDEKPHVCNFCGKGFSRSDHLQKHIQSIHCEKNYKCDQCSSAYGRKDHLQRHIETRHNKDPTIQKPQFDCDMCEKKFTTKAYLAKHKLLHTDRLYACKHCSETFTEKEQMKEHQKKKHAQPRNFLCNICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHIGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDMCSAAFLQRYGLNAHLRTVHGIIVTSFTGRLRKTEQPIDGGGGGGEQLDQTTTAAVVTTPTTQQLAPAQQEQSHTSLSSPHIDSTITPPPLYLGHHFIAPTVGSTSTSPPIDISSTSATTSSSSSSLPPLPLAHPSAQQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-