Lcup013890.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- -
- Assembly
- GCA_001187945.1
- Location
- JRES01000088.1:25716-45642[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.033 2.2 8.6 6.6 1 21 377 397 377 399 0.95 2 23 0.39 26 5.2 1.3 1 15 406 420 406 429 0.81 3 23 3.2e-05 0.0021 18.1 0.4 1 23 434 456 434 456 0.98 4 23 0.0014 0.095 12.9 5.0 1 23 462 485 462 485 0.95 5 23 6.7e-05 0.0044 17.1 1.1 1 23 490 514 490 514 0.95 6 23 0.0037 0.24 11.6 0.2 1 23 519 542 519 542 0.97 7 23 0.024 1.6 9.1 4.0 1 23 601 624 601 624 0.96 8 23 0.002 0.14 12.4 1.1 1 21 631 651 631 652 0.95 9 23 0.014 0.95 9.7 0.9 1 23 661 683 661 683 0.98 10 23 0.00027 0.018 15.1 1.1 1 23 689 712 689 712 0.97 11 23 4.6e-05 0.0031 17.6 0.8 1 23 717 741 717 741 0.96 12 23 3.2e-07 2.1e-05 24.4 3.0 1 23 747 770 747 770 0.98 13 23 0.038 2.5 8.4 2.1 1 23 906 929 906 929 0.96 14 23 4e-05 0.0027 17.8 1.3 3 23 945 966 943 966 0.96 15 23 0.25 16 5.9 1.0 1 23 971 994 971 994 0.93 16 23 0.018 1.2 9.4 2.8 1 23 1007 1030 1007 1030 0.96 17 23 0.0037 0.25 11.6 1.0 1 23 1046 1069 1046 1069 0.97 18 23 2.7e-05 0.0018 18.3 0.5 1 23 1205 1227 1205 1227 0.98 19 23 1 70 3.9 0.7 1 22 1234 1257 1234 1259 0.80 20 23 0.00021 0.014 15.5 1.7 1 23 1264 1286 1264 1286 0.97 21 23 7.7e-06 0.00051 20.0 1.6 1 23 1292 1315 1292 1315 0.97 22 23 0.00019 0.012 15.7 0.2 1 23 1320 1344 1320 1344 0.96 23 23 0.00032 0.021 14.9 2.3 1 23 1349 1372 1349 1372 0.96
Sequence Information
- Coding Sequence
- atgtCTGCAGCCGCTTTTGTGATGCCTAATGACTTGTCTGATTTGTGTCGCGTGTGTTTGCAATTGCCAGAGGAGTCTCAATATTTGGATTTGACCACCATATATGATGAAGATGATCATTTAACTTACGGTGAATGTTTTACTATATGCACACAAATCGATTTAAGTGCCGGCGAAGGAGTGCCTCATCATTTGTGCAAACCTTGTGGTTTAGAACTGCAAATGTCctatgattttcataaaaaaattgaagaatCCAAAAGGGTGATAGAACAATGTCAAAAGCAaatagaagaacaaaaaaggaATTCTAACACAGATGAGTCGGAAGGACTACATACAAATACTAGTGGAGAAGGGCGGGAGGTGGTTCAGctactaaatgaaaaatatgtcatAAGTGATGACGAGGAGGATGTTGATGAAGAGCGGGCGGTATCTTCTCAGGAAATGCAAAATGTTAGCATAATGCAATCGGAATTCAATACACCAGCCCAGGAGGATGATGAGACTGATGaaatgaatataataaataaaatttgtcatatAGAGGATAAAGATACGAACACAACTATGGAACACATGGATGAACATGATGTGGCCAATGATGCTGAAGAAATGGATGATTATCAAAATTTGGAAACACTAGAGGATGAAGAAACGGAAACACTACAAATAAAATGTGGTGAAAACACAATACCCATACAAGTAACAAAATACAATACTATTAAATGTGGCGTAAATGAAGAATATGTGGAATATGCTGAAGAAGAGGAAAATGTGGAGGATGAGGGAGTGGCGGAATCAGAGCaggataaaatattaaatgaggAATATGCACAAGAACCAAATGATGAAGATATAGCGGAACATTTAAGGTGGCAAGATAATGTTGTAGCTGTAGCCAGTAAAGAACATTTACCCATTGAAAttgaggatgatgatgatgatgataatgatgaacaGGAGGAGGGAGATGATGAACATGAGGCAATATatgaaacaaatgaaaatcACATAATAATAGAAGATAGTTCACATGATGACAAAGTTGAAGATGAAACAATTGAAACAGTAAATAACAACGATGGTAATAACACTACAACACGTAAACGTCATGTAGGTTCCTACAGCTGTGACTATTGTCATCGTGTCTTTCCCAACTATTCACGCATGAAAACTCATCGTCGTTGTCATGAAAAAGATCGTCCTAAATTCTCTTGTTCTCAATGTGGTCGCATGTATGCCACCAAACAAGCCCGAGATTGTCATGTGCAAACGGCTCATGAAAAATCTGGGTTTACCTGTAGCATTTGTAATAAAGTTTTTGCCATACGCAAAAGTCTAGAGATACATGTACGCTATCATACGGGTGATTTTCCACATGCTTGCAATTTATGTGATAAAAAGTTTGCACAAGTCTGTCATTTGAATACCCACATTAATgttaaacacaataaaatacGTTTTTCCTGTGATTATCCGGGTTGTGGGAAGTTTTTCACCTCCTCTACATCCTTGCGTAATCATGAATTTACTCATGGCATAATGCCATTCGAATGTGAATATTGTCAGCAGGGTTATCCGGCTAAagcaaagtTAAGAATACATATATTACGTAAGCATGGCATGGACCTCAGTAAAGATCAATTGGAAAATATGCACCTTCCATCTTTTATGTTTAAAGAGGAACGTTTAAATGACGACATCGTCCCCCCAGAGGAAGAAATCATAACGAACACCACAATAACACCTTGTATACCAGCTGGTATTAGACTACCTTTACCTGCAGGGCCTCCatttatatgtgaattttgTGGACATAGTTCCAAAACGAAAGCCCTATTGGCCTCACATCGTCATAGGAAACATCGTCATAAAGAGTCTGCCTACCAATGTGAAAAATGTGATCAACAATTTAGTTCCAAGGATGTCTAtgacaaacatttaaaacgTGTATCTTGTCAAAAATATCCCGAATTTCAATGTGAATTTTGTTCGAAGAAAATTATAGGATCggcaaattataaaattcatttaagatttcacaaaaaaatctatCCCTTTGAGTGTGATCAATGTGGCAAAGGTTTTATGTTGGCCGTACACTTAAAGGTTCACAAACAAacgaaacatgaaaataaacgTTACGTATGCGAAGAGGcaaattgtggaaaatttttcaaatcacaacaatctttaaaaaatcatacataTGTGCATTTGGGCTCTTTGCCATATTCATGTGAATATTGTGGGAAAATGTTCACGAATAGAGGAAGTTTACGTTGGCATTTAAAAACATGTCATGGTAGGGAAGTTACTGGGCAAGATTTGGAACaaaaaagaacaagagttgaaactaatttaaaaataaaaactgaaaccTTAAATGAAGAGGAACAAACTATGCTAAAAGAAGAGATATTAAAAGTATCAACAGAAACATATTTCTTAGCAAATGATATTAATAAaggaattaaaactgaaatatcAATGGAAAATAATGATAATCAGGATCCCTTGAGGGGCGAACACTTTATCATTAGACATGTTGAAGAGGAAAATGCAACTGCTgatgttattaaaattgaaaatgacaCATTTAGTGAATATATTGTAGCAAGTCCACCCACCATAATACCAGAAGTTGTTGTTCCGCCTCTAGCTACTCACCAGCAACTCTATGAGCGGAGTCAACCTATGGGACCTTCATTTGTATGTGAATTCTGTGGTCACAGTATGCCAACCAAGAATGCCTTATACAAACATCGTTTGCGGAAACACAATGTAAAGGGCTTTTCAGTGCAACAGACACCCTTAACCGTAAATTGTAATTTGTGTTCTAAAGAGTTTGCTAACAGGTCCTTGCTGAGACATCACATAAATAGCATTCATGTAAAAAAGGGTTTTGTTTGTGAGCATTGTGGTTATAATTTACCCACAATGAATGCTGTCTATCAACATCGTTTACGGAAACATCGTGATCCtaagaaacaacaaaagcaacttTTGCGTTACAAATGTACTCACTGTTCAGAGTTATTTGAAACGGCTAAGAGTTTAAGTTTACACAAGGCAAAGAAACATGAAAAGAAAAGTACTgtggcagcagcagcagaagCAAACGATTGTTTTGAATGTGAAGATTGTGGTTATAAATTGCCCacgaaaaatgcattttatcaACATCGTCTAAGAAAACACAAACctAAAAATGTAACTTTACCTCAAACCTACCACCATAATAACatggatttaaataattttattcatataaatcgACCCGATTTTTGTGCAAATGTACAACGTTATGTGCCACCTCTTTCCGAAGAAACCGTTATTGAAGAAGAAATATCACAAGATGCCACGGACAAGTGGTTATACACTCTAGCTGATATGGAAACAGAAATTCAACCAAATACCACTAATAGTAAAGAAATATCTcagttaaaaatgaaattaagatcGACAACAAACTCAGTGAATAAAATTAACGAATGTAAAGATAAAAATCACGATAATTCCGAacataaactaaaagaaaaaactatagattCAATAACATTTACGGTGGAAGCAACATCTTTTGATCAAGCcaatttaaaatcatatatttgtaaaatttgccTTAAACCATTTGAAAGTAATAATCGACTAACATGGCACATGCGTATGCATGATAAGAATCGCAAACGTTTTGTGTGTCCCGTACAAATATGCGGACGTATATATGCCTCCAAACAAGCCTGTGATCTTCACTATAAACAATCGCATCTGGATGAGGGATTTATTTGTCTCTTATGTCACAAAATCTTTTCGGCGAAGCAAACTTTAGAAGTCCATATGCGTTATCATACAAAAGAGTTTCCGTATCAGTGTAATCTTTGTGAGCGAAAATTTGCCCAAAAGGGTCACTTAACGCAACACATTGAGGTCAAACATCAGAATATAAGATACATTTGTACCGAACCCGATTGtggtaaaatatttcaaaatagcGTTTCTCTGCGCAATCATGCTTATACACATTCATCGATGCCTTTTAAGTGTAATCGTTGTGATAAGGAGTATCCTCAGAAGAACAAgttaAGATCCCACCTATTGAATAAACACAAGTTAGATTATTCTCTGAAAGATTTAGAGTCCATGCGCCAATTTAATATTGTACGTACGCGTCATGCTTATGTTAAGGTGCAAACAATAGCCGCCGACGAATCAGTAAACGATGATTCCGAGGATACATGA
- Protein Sequence
- MSAAAFVMPNDLSDLCRVCLQLPEESQYLDLTTIYDEDDHLTYGECFTICTQIDLSAGEGVPHHLCKPCGLELQMSYDFHKKIEESKRVIEQCQKQIEEQKRNSNTDESEGLHTNTSGEGREVVQLLNEKYVISDDEEDVDEERAVSSQEMQNVSIMQSEFNTPAQEDDETDEMNIINKICHIEDKDTNTTMEHMDEHDVANDAEEMDDYQNLETLEDEETETLQIKCGENTIPIQVTKYNTIKCGVNEEYVEYAEEEENVEDEGVAESEQDKILNEEYAQEPNDEDIAEHLRWQDNVVAVASKEHLPIEIEDDDDDDNDEQEEGDDEHEAIYETNENHIIIEDSSHDDKVEDETIETVNNNDGNNTTTRKRHVGSYSCDYCHRVFPNYSRMKTHRRCHEKDRPKFSCSQCGRMYATKQARDCHVQTAHEKSGFTCSICNKVFAIRKSLEIHVRYHTGDFPHACNLCDKKFAQVCHLNTHINVKHNKIRFSCDYPGCGKFFTSSTSLRNHEFTHGIMPFECEYCQQGYPAKAKLRIHILRKHGMDLSKDQLENMHLPSFMFKEERLNDDIVPPEEEIITNTTITPCIPAGIRLPLPAGPPFICEFCGHSSKTKALLASHRHRKHRHKESAYQCEKCDQQFSSKDVYDKHLKRVSCQKYPEFQCEFCSKKIIGSANYKIHLRFHKKIYPFECDQCGKGFMLAVHLKVHKQTKHENKRYVCEEANCGKFFKSQQSLKNHTYVHLGSLPYSCEYCGKMFTNRGSLRWHLKTCHGREVTGQDLEQKRTRVETNLKIKTETLNEEEQTMLKEEILKVSTETYFLANDINKGIKTEISMENNDNQDPLRGEHFIIRHVEEENATADVIKIENDTFSEYIVASPPTIIPEVVVPPLATHQQLYERSQPMGPSFVCEFCGHSMPTKNALYKHRLRKHNVKGFSVQQTPLTVNCNLCSKEFANRSLLRHHINSIHVKKGFVCEHCGYNLPTMNAVYQHRLRKHRDPKKQQKQLLRYKCTHCSELFETAKSLSLHKAKKHEKKSTVAAAAEANDCFECEDCGYKLPTKNAFYQHRLRKHKPKNVTLPQTYHHNNMDLNNFIHINRPDFCANVQRYVPPLSEETVIEEEISQDATDKWLYTLADMETEIQPNTTNSKEISQLKMKLRSTTNSVNKINECKDKNHDNSEHKLKEKTIDSITFTVEATSFDQANLKSYICKICLKPFESNNRLTWHMRMHDKNRKRFVCPVQICGRIYASKQACDLHYKQSHLDEGFICLLCHKIFSAKQTLEVHMRYHTKEFPYQCNLCERKFAQKGHLTQHIEVKHQNIRYICTEPDCGKIFQNSVSLRNHAYTHSSMPFKCNRCDKEYPQKNKLRSHLLNKHKLDYSLKDLESMRQFNIVRTRHAYVKVQTIAADESVNDDSEDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -