Lcup007848.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- -
- Assembly
- GCA_001187945.1
- Location
- JRES01001001.1:210798-218402[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.016 1.1 9.6 0.1 2 23 242 264 241 264 0.91 2 21 0.28 19 5.7 0.0 6 23 273 290 273 290 0.97 3 21 0.00013 0.009 16.1 0.4 1 23 296 319 296 319 0.97 4 21 0.001 0.068 13.3 4.8 1 23 329 351 329 351 0.99 5 21 7.9e-05 0.0052 16.8 3.8 2 23 358 380 357 380 0.94 6 21 0.00033 0.022 14.9 1.0 2 19 387 404 386 408 0.93 7 21 0.34 23 5.4 0.3 2 23 417 438 416 438 0.96 8 21 0.019 1.3 9.4 0.7 3 23 445 466 443 466 0.89 9 21 1.5e-05 0.00099 19.1 0.6 2 23 473 494 472 494 0.96 10 21 7e-06 0.00047 20.1 1.8 1 23 500 523 500 523 0.98 11 21 0.34 23 5.4 0.3 10 23 553 567 552 567 0.91 12 21 2.2e-05 0.0015 18.6 3.1 1 23 573 595 573 595 0.97 13 21 0.2 13 6.1 3.2 2 23 604 625 604 625 0.96 14 21 4.8e-05 0.0032 17.5 1.8 2 23 631 653 630 653 0.92 15 21 2.8e-06 0.00019 21.4 0.4 2 23 660 681 659 681 0.96 16 21 0.46 31 5.0 5.5 1 15 687 701 687 717 0.93 17 21 6.6e-05 0.0044 17.1 2.8 1 23 723 745 723 745 0.95 18 21 0.26 17 5.8 3.4 2 23 754 775 754 775 0.96 19 21 6.1e-06 0.00041 20.3 1.3 3 23 782 803 780 803 0.94 20 21 1.7e-05 0.0011 18.9 0.4 2 23 810 831 809 831 0.96 21 21 8.9e-05 0.006 16.7 3.4 1 23 837 860 837 860 0.98
Sequence Information
- Coding Sequence
- atgatttgtCGTCTATGTTTAAAAGACATTCCCAAAGAATCTAGtattaaattgtatgaaaatttagACACATCAAGTGATTCCCTAGAAATGGTCAAACTAATCGAAAAGTATTTGGAAATTGAAATTAAACAAAACGATATTGTGTCGACTATAATATGTCAAGATTGTTATGATCACTTGGAAGAGTTTCATCGATTTTCGCAACAAGTGGCTGAGAAACAGCTAACACTGCGTAATGAGTTTATGGATGTAAATCTGaagaaagaatttaattttgatgATGATGGCGATGCTTGGGATAATGATGATCAAGAGGATAAAATTGAAATGGACCCAAAAGAAACTACACAAATGACCATAAACTGTCCCATAAGTATGTTTAAGGATGAATCGGaaaatgacgatgatgatgatgataatgacgaAAAGGAAATGCCTACAGAGGACTTAATGGATACTGTTATAGGTAATGTGGAGAAAGATATTATAGCACCTGATAGTGTAGCGGTCAATGAAGAAGAGGATGATGATTATCTACCAGATCAAATTTCTTCGGAagATGATGATGTGCCCTTGATAAAACTTAAATctactaaaaaaactaaaaatgcaaaaacaaaacgtaAAAGAACTCCTGCAAAAACACGCGAGCTTAAAGAAAAGAAACCTGCTAAAAAGAAATTATCCGCACAAGAAGAAGTGGCCATGTCTATGGATCTAGTATGTGATATATGTCAGACACGCGTTGAAACCTGGAAAGAATTAAGAGAACACTTTCTGTTGGCACATACTAAGACACCATATATTAAATGTTGTGACATTACCTATCGTAAACCACGAGAACTTATTGAACATCTTGAGTGGCATAAAAATCCAGATATGTTTAAATGTcaaatttgtgataaaaatatgtCAAGTGCTCGTAATCTAACAATACATATTACTTCAGAACATCCCGATGAAGCTGATTCAGTTGAATTCTACGAATGCGAACACTGTTCCAAACGTATACGAAATTATAATctatttaaaaagcatttacGTTCCCACAACAAAGATAAAGAAGTTGAATGtcatatttgcaataaaagATTCCAATCAGAATATCATTTAGAACGACACCTTAGTAACTTTCATAAGAAAGCAACACCGCTTGTCTGCGACATATGTGGACGTGTCTACAAAAATAAAGCCGCTTTTAAACGTCATTGTGATGAACATCAAGGTATAGTCTCTCAGGCTGTACAATGTTCGATATGCAATACATGGCTTAAGAATGAAGAAGGTTTACGATTACATCGTTTTACACACGAAGAACAACCAACTGCTTGTGATGTTTGCGGAAAACTATTTCAAACTAAACGTAGATTATATAGACATAAAGTCTATTGGCATACATtagatacaaatttaaaatgtactttttgtgATAAAGTTTTTCGGGAAAAACGTAATCTTGATGAACATATGGCCATACATACGGGTGTTCAACTCTATACGTGTCCGCATTGTGGCAAAGATTCACGTTCCaaatcaaatatgtatgttcatattaAAAGAATACACCCGGAAGAATGGTGGAAATCAAAAATGGAACGTTTAAATTTAGTACCTAAAGATGAGCAAACGAAAGAGATGGTGGTGGAAGATAAatTTTGCTCGGAAAATAACTTAACTCGTCATATccaaaatatgcataaatatgcaaaatatcatGTTTGCGATGTTTGTggtcaaaagtttaaaaataaagattcaTTCAAAAACCACTATGCTAAACATCAAGGCATTATAGAACCAGCCGCTCAATGTTCTATATGCAATCGATGGCTGAAAAACAAACATAGTTTAAGATTACATCGTTTTGTACACGAGAAAAATCCAACACCCTGCGATATCTGTGGCAAAGTATTTGATACTAAACATAGACTACGCAAACATAAATCCTATTGGCATAAATCCGATTTGAATTTACAGTGTAATTTTTGTGAGAAAGTTTTTCGTCAGGAACGTAATCTGCAAGAACATATGGCAATACATACGGGTGTACAACTCTATAAATGTCCTCACTGTCAGAAGGAATCACGTTCAaaatcaaatatACTATCTTCGGAAAATAATTTAACGCGTCATATTGATAATacacacaaatatataaaatatcatgtttGTGATATTTGTggtcaaaagtttaaaaataaagattcaTTTAAATTACACTACGATCAACATCAAGGCATCATTGAACCGGCCGCACAATGTTCCATCTGTCAAAAGTggcttaaaaacaaacacacccTACGATTGCATCGTTTTGTTCATGAGAAAAATCCTACAGCATGTAACATATGCGGTAAAGTATTTGAAACCAAACACAGATTACGCCGTCACATATCCTATTGGCATAATTCGGATGTAAATTTACAATGTAACTTTTGTGAGAAAGTTTTTCGTGAGGAACGTAATCTAAAAGAACATATGGCCATACATACGGGTGTTCAACTCTATAAATGTCCTCATTGTCAAAAGGAGTCACGTTCGAAATCAAATATGTATGCTCATGTCAAGAGACAACATCCGGCTGAATGA
- Protein Sequence
- MICRLCLKDIPKESSIKLYENLDTSSDSLEMVKLIEKYLEIEIKQNDIVSTIICQDCYDHLEEFHRFSQQVAEKQLTLRNEFMDVNLKKEFNFDDDGDAWDNDDQEDKIEMDPKETTQMTINCPISMFKDESENDDDDDDNDEKEMPTEDLMDTVIGNVEKDIIAPDSVAVNEEEDDDYLPDQISSEDDDVPLIKLKSTKKTKNAKTKRKRTPAKTRELKEKKPAKKKLSAQEEVAMSMDLVCDICQTRVETWKELREHFLLAHTKTPYIKCCDITYRKPRELIEHLEWHKNPDMFKCQICDKNMSSARNLTIHITSEHPDEADSVEFYECEHCSKRIRNYNLFKKHLRSHNKDKEVECHICNKRFQSEYHLERHLSNFHKKATPLVCDICGRVYKNKAAFKRHCDEHQGIVSQAVQCSICNTWLKNEEGLRLHRFTHEEQPTACDVCGKLFQTKRRLYRHKVYWHTLDTNLKCTFCDKVFREKRNLDEHMAIHTGVQLYTCPHCGKDSRSKSNMYVHIKRIHPEEWWKSKMERLNLVPKDEQTKEMVVEDKFCSENNLTRHIQNMHKYAKYHVCDVCGQKFKNKDSFKNHYAKHQGIIEPAAQCSICNRWLKNKHSLRLHRFVHEKNPTPCDICGKVFDTKHRLRKHKSYWHKSDLNLQCNFCEKVFRQERNLQEHMAIHTGVQLYKCPHCQKESRSKSNILSSENNLTRHIDNTHKYIKYHVCDICGQKFKNKDSFKLHYDQHQGIIEPAAQCSICQKWLKNKHTLRLHRFVHEKNPTACNICGKVFETKHRLRRHISYWHNSDVNLQCNFCEKVFREERNLKEHMAIHTGVQLYKCPHCQKESRSKSNMYAHVKRQHPAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -