Lcup006722.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- -
- Assembly
- GCA_001187945.1
- Location
- JRES01001123.1:176717-189087[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0015 0.097 12.9 1.0 2 20 255 273 254 277 0.88 2 26 1.6 1e+02 3.3 3.8 6 23 287 304 287 304 0.98 3 26 1.5e-06 0.0001 22.2 2.5 1 23 310 333 310 333 0.97 4 26 5.2e-06 0.00034 20.6 1.8 1 23 342 364 342 364 0.98 5 26 0.17 11 6.4 1.0 1 23 370 393 370 393 0.88 6 26 0.0038 0.25 11.6 0.4 3 23 399 419 398 419 0.96 7 26 0.043 2.9 8.2 2.5 2 23 428 450 427 451 0.94 8 26 0.00056 0.037 14.2 0.1 1 23 457 480 457 480 0.96 9 26 2.9e-05 0.0019 18.2 0.5 1 23 486 508 486 508 0.99 10 26 8.6e-05 0.0057 16.7 8.3 1 23 514 537 514 537 0.98 11 26 0.0087 0.58 10.4 0.7 2 23 800 822 799 822 0.94 12 26 0.074 4.9 7.5 2.1 6 23 832 849 827 849 0.98 13 26 8.8e-06 0.00058 19.8 1.6 1 23 855 878 855 878 0.96 14 26 0.0033 0.22 11.7 0.1 2 23 888 909 887 909 0.97 15 26 0.015 1 9.6 0.4 1 23 915 938 915 938 0.94 16 26 0.04 2.7 8.3 2.7 2 23 943 964 942 964 0.95 17 26 0.079 5.3 7.4 0.1 2 23 973 995 972 995 0.93 18 26 0.0013 0.087 13.0 0.0 1 23 1002 1025 1002 1025 0.97 19 26 0.00017 0.011 15.8 1.6 1 23 1031 1053 1031 1053 0.98 20 26 8.8e-05 0.0058 16.7 3.8 1 21 1059 1079 1059 1080 0.95 21 26 0.0012 0.078 13.1 2.8 2 23 1262 1284 1261 1284 0.93 22 26 0.047 3.2 8.1 0.3 6 23 1294 1311 1294 1311 0.99 23 26 1e-05 0.00068 19.6 4.0 1 23 1317 1340 1317 1340 0.97 24 26 0.0016 0.11 12.7 0.4 2 23 1447 1469 1446 1469 0.96 25 26 1.2e-06 7.8e-05 22.6 1.6 1 23 1502 1525 1502 1525 0.97 26 26 0.013 0.85 9.9 2.1 2 21 1532 1551 1531 1552 0.92
Sequence Information
- Coding Sequence
- atgtctCTGGACACATTGTGTCGTTTATGCGTATGTCCTTTTCATGACTGTAAACAATTATTCGATGAAAATGGTCAGTGCAATGAGGCTTATGATATAGCCACCAAATACTTTGATCCAATGctattaaactcggaacaagaACTCAACTCGGCCGTAATATGTCTAGAATGTTGGCAGCACATCAGTGACTTTTATAATTTCCAACAGACTGTGTATACGGCACAGTCAAAGTTAGAGGATGTTAAGCAAATTGTACCCCTTATTAAACTAGAAGAAGAACTAATAGAAGAAACACCGATTGACAGTGGAGAACTACAAAatgatgttttattaaatgatgaAGAACTTAAGGACGAGGATCGCATATCTGATGTAGAAGATACTTACGATGTAAGAGATGATAATCCTTTTAGTTCCGATGATGAGAGGCCACTATTGGAAAGTATTAGAAAAGTaagcaagaaaaaaactaaaagaaataaaaaggagGAATCCGAAGACAATACAGACAAGTCGAAAACACCTccaaaaaagaaagagaaacgCATTAAAAAGGagaataaaagcaaaacaaaatctaaagcTGGCGACTCAGAGATTAAAGCAGAAGAGGCATCAGAAGATCCTAACGATTCAGCGAATAATAATGAACAAAGTGGTAGTCAAAATGAAAACTCTACATCAACAGATAAAATTAGTTATAATAAACAAAGAACACTGGAGAATGATGCTTATATAGCCGCTTGGCGCAGTGAATTGGAATGTGAAATATGTCATGCCTCATTCTCAAATTACACATTGCTGCGTAAACATTTTGTCCAGGAACATCCCGGAGAAAAATTCTATGTTTTATGTTGTCAACGAAAATTTACCCATCGTTTTCATATAGTGGAACACATACGCCTGCATATGGATCCAAATGCCTTTAAATGTGAAATATGTGGTCGCTGCAGTACTAACAGTCGCAATCTAACTAAACATATAAGAGAACTACATACTGAGGAAGGAAAGCTGCGTCCATTTGAGTGCAACGTATGtcataaatcttttataaacaaGACAGTATTAAGAATACACATGGAAACTCATGAGACCAATCTTACACATATGTGTAGAGAGTGTGGCAAAGGTTTTCCCTCCGAACAAAGGCGAAATCTTCATGAAAAATCCGTACATAATGCAGATCGAATTTGTGATCAGTGCGGCAAAACATTACATGGTCCCTATGCTCTGAAAAAGCATCTTCTCGAGCATGCTGGGGTACAGAAACGTAAATGGCCTTGCGATATCTGTGGTGCCGAATTACATTCGCACTCTAGTTTAAAGAGACACAAACTTATTACACATCACGATGGTTCCACCGTTTATGTTTGCAGTGAGTGTGGTAAGGTGGCCACTACCGAAATGGCATTACGTAGTCACAAGAAAAATGTTCATCAAACTGAGCGTAAATTTAAATGTACAATATGTgagaaaagctttaaatttgcCATTGTATTACGCGAACATATGGCTACGCACACGGGCGAGGATTTATATCAATGTCCACATTGCACAAAAACCTTTAAGACAAATGCCAATATGCATCATCACCGCAAGAAGGCACATCCTAAGGAATGGGCAGAAGCGCGTATGAATAAACCTCAGTCGACAAAGGCCATTTCAAACAGTGTAAAGAAGATAAAAcatgttataataaatttacccTTGAGAGTCTGTAGACATGTTAAGTGTCACTTAGGAGCATTCCAAGATGATTGCCAACATTTAATCGATGATACAGGTCAATGTAATGATGCTTATGATATTGCCAGTAAATATTTTGATCCAATGTTGTTGATTTCTGATCAAGAAAACAGTTCTCCTATTATATGCGCAATTTGTTGGCGACATATACAGGATTTCTACTATTTTCAACAAACAGTATTTGAGGCTCATGCCAAACTGGAAGATGTTAAGGAAATCGCCTTAGATGTTAAAGTGGAGCTGGAACAAATTGATGATAAGCAGCCAAAAGCAGATGGTAGTTCATCTGAGAAATATGTTAAACATGAATTAGATGACAATCGAATAGAATCCTTTGATATAGAAGAAGATAATGTATTTAGTTCTGATGATGAAAGACCCTTAATGAGAAGTTCTAATCTGGTAAAAGAAAAATGCTCAGCTAAACAAAATTCCAAAGAAATAGTAAGtctaaacaaaagtaaaactcCTAAGAAACATGACAAGAGgcgtaaaaagaaaaagttagaAACAACagagaaacaattaaaaagaaaaacttcaacATTATTGGATGAGGATGATGCTTGTAATATCAGTGAAAAAACAGATGCTCAACAGAAAACCTTAGAAAATGATGCATTTATAGCTGCCTGGAGAAGTGAGTTGGAGTGTGTGAAATGTAATGCAACATTTGCAAATTTCACCTTACTACGCAAGCATTTCCTCAAGGATCATTTAGAGGAAAAGTGTTATATTATTTGCTGTGATCGAAAATTTAGCAGTCGATATCATATTGTGGAGCATATACGATTACATATGGATCCCAATGCATATCGCTGTGATGTCTGTGGCAGATGTAGTACTAACAGCCGAAATTTGGCTAAACATATTAAAGAATTACACAGTGAAGAGGGTGAACGGCGCGGTCTGGAATGTCCAAcatgtttaaagattttagccAATAAAAACTCCTTGAGAGTTCACCTGGAAACTCACGAAACAAATCTAAACTATATTTGCCGAGAATGTGGCAAAGGTTTTCCCTCCGAACAAAAACGTACGCTACACGAACGTTATGTTCACAATGCATCTCTTATTTGTGATCAGTGTGGAAAAACTCTACACAATCACTATGCCATGAAGCAACATCTTCTCCAGCATGCAGGCGTTCAAAAACGTAAATGGCCCTGTGATCTTTGCAGTGTTGAATTGAATTCACGCTCTGGTCTTAAACGTCACAAACAGCTAATACATCAAGATGGCTCTACGGTATATGTTTGTAGTGAATGTGGTAAAGTTGCTAGCTCCGAAATTGCATTACTCACACACAAACGTAACGTTCATATATCAGGACGTAAACATAAGTGTACACTTTGTGAAAAAGCCTTTAAATTTCCTAGAGTCTTGCGGGAACATATGGCAACCCATACGGGAGAGGATTTGTATAAATGTCCGCATTGTGAGCGTACATTTAAGACAAATGCTAATATGCATCATCATCGAAATATTGTGCAATTTATAAAAGTGGAATTTTTTTCATCATACAAACATTTACTATTTAATACGCTTTTTGTAATTATGAATCAAACTGCATTGTGTCGTTTATGCATACGTTTatataatgaatttataaatttattcaatgaTAATGGTGAGAGCAATGAAGCCTATGATATTGCCGTCAAATATTTTGATCCCATGTTATTGAAACCACAACATGAACATGACACTACCTTAATATGTATTGTATGTTGGagtcatataaataattttcacaacTTTCAAAATTCGGTTCTCAATGCACAAGTGCAACTGGAAAACAATATCGAACATATACCAATGATTAAGCTCGAAGATGAAGCCTGGATGGATCAAATAACTATTGTcgataatgaaaataatacattaacaaATACAACTCATTCATATGTATACGGTAAAGAAAACGAAAATCAGGAACTGGCTTCCTCCAGTAGACACAACGAATGTAAACCTAATATGGATAAAACTCAAGAATATGAGATGTTAATAAAGAAATGGAAAGGTGTATTGGAATGTGAAATATGTCActataaattcaataattttagtGATTTACGTCAACACTTTCAACAGCAACATCCTAgagataaattatatattaaatgttgCAAACGTAAATTTTACAATCGTTATGATATGGTCGAACATATACGAGTACATTTAAATCAGAATACCTATCAGTGTAATATctgtaataaaacattttcttgtaATCGCAATTTAAATCGTCATATACGACAAGTACATATTGAAAAAGTTCAGCAAGTgtttgaattaataaataataccaATAAATCCGAAAAATATCATCCTCCTATGGGTTTATTAAAGGCAGAAGAggagaataaaacaaataacaaaaagccCTTTACTAGATCGACAAAGGTGCCACGTGGCAAAATAAATATCACACCACAAACTGATGAAAAAATTGCTGGCAATTTAGAGGTGAAAAAAACACGACGTCACCATCAGGAtctgaaatattttcaacttaaaatttcatcaaacaaaaaaacccCATTGGAATATGATACACAAATAGCCGAATTAAAAAGTGTATTAGAATGTCCTGTCTGCCaaagaaattttccatattATACTACATTGCGAGAACATTTCCAAACGGATCATGCCGAAACGAAATTCCATATAATGTGTTGTCAACGTAAATTTGGCAATAGCTATCAAATATATGAGCATTTTCAACTTCACAATAATCCCAATGCATTTAGATGTGAAATATGTGAACACACTTTTTCCCGAAGCGCCAGTTTAACCCGACACATACGGGAGTTACACATGCAAAATGTTCAATGGTCATGCGATCATTGTGGTGTTAGCTTTAAGTCTTGCTCAGTTTTGGGTAGACATAAAAAGAGATGTTtaggaaaaatatgtaaaaagttgCAGCCACAACACAAAGTGGAATGTCTTAATGTAACGGATAACTATGTTGgtgcaacattttcaaattatacTTTACTGCAAATTGCACCGTaa
- Protein Sequence
- MSLDTLCRLCVCPFHDCKQLFDENGQCNEAYDIATKYFDPMLLNSEQELNSAVICLECWQHISDFYNFQQTVYTAQSKLEDVKQIVPLIKLEEELIEETPIDSGELQNDVLLNDEELKDEDRISDVEDTYDVRDDNPFSSDDERPLLESIRKVSKKKTKRNKKEESEDNTDKSKTPPKKKEKRIKKENKSKTKSKAGDSEIKAEEASEDPNDSANNNEQSGSQNENSTSTDKISYNKQRTLENDAYIAAWRSELECEICHASFSNYTLLRKHFVQEHPGEKFYVLCCQRKFTHRFHIVEHIRLHMDPNAFKCEICGRCSTNSRNLTKHIRELHTEEGKLRPFECNVCHKSFINKTVLRIHMETHETNLTHMCRECGKGFPSEQRRNLHEKSVHNADRICDQCGKTLHGPYALKKHLLEHAGVQKRKWPCDICGAELHSHSSLKRHKLITHHDGSTVYVCSECGKVATTEMALRSHKKNVHQTERKFKCTICEKSFKFAIVLREHMATHTGEDLYQCPHCTKTFKTNANMHHHRKKAHPKEWAEARMNKPQSTKAISNSVKKIKHVIINLPLRVCRHVKCHLGAFQDDCQHLIDDTGQCNDAYDIASKYFDPMLLISDQENSSPIICAICWRHIQDFYYFQQTVFEAHAKLEDVKEIALDVKVELEQIDDKQPKADGSSSEKYVKHELDDNRIESFDIEEDNVFSSDDERPLMRSSNLVKEKCSAKQNSKEIVSLNKSKTPKKHDKRRKKKKLETTEKQLKRKTSTLLDEDDACNISEKTDAQQKTLENDAFIAAWRSELECVKCNATFANFTLLRKHFLKDHLEEKCYIICCDRKFSSRYHIVEHIRLHMDPNAYRCDVCGRCSTNSRNLAKHIKELHSEEGERRGLECPTCLKILANKNSLRVHLETHETNLNYICRECGKGFPSEQKRTLHERYVHNASLICDQCGKTLHNHYAMKQHLLQHAGVQKRKWPCDLCSVELNSRSGLKRHKQLIHQDGSTVYVCSECGKVASSEIALLTHKRNVHISGRKHKCTLCEKAFKFPRVLREHMATHTGEDLYKCPHCERTFKTNANMHHHRNIVQFIKVEFFSSYKHLLFNTLFVIMNQTALCRLCIRLYNEFINLFNDNGESNEAYDIAVKYFDPMLLKPQHEHDTTLICIVCWSHINNFHNFQNSVLNAQVQLENNIEHIPMIKLEDEAWMDQITIVDNENNTLTNTTHSYVYGKENENQELASSSRHNECKPNMDKTQEYEMLIKKWKGVLECEICHYKFNNFSDLRQHFQQQHPRDKLYIKCCKRKFYNRYDMVEHIRVHLNQNTYQCNICNKTFSCNRNLNRHIRQVHIEKVQQVFELINNTNKSEKYHPPMGLLKAEEENKTNNKKPFTRSTKVPRGKINITPQTDEKIAGNLEVKKTRRHHQDLKYFQLKISSNKKTPLEYDTQIAELKSVLECPVCQRNFPYYTTLREHFQTDHAETKFHIMCCQRKFGNSYQIYEHFQLHNNPNAFRCEICEHTFSRSASLTRHIRELHMQNVQWSCDHCGVSFKSCSVLGRHKKRCLGKICKKLQPQHKVECLNVTDNYVGATFSNYTLLQIAP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -