Lcup011761.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lucilia cuprina
Gene Symbol
grau
Assembly
GCA_001187945.1
Location
JRES01000975.1:1841772-1858033[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 0.00039 0.026 14.7 3.4 1 23 293 316 293 316 0.97
2 35 0.0003 0.02 15.0 0.3 2 23 322 343 321 343 0.96
3 35 0.0011 0.073 13.2 0.2 2 23 352 374 351 374 0.95
4 35 0.027 1.8 8.9 0.2 3 23 382 402 381 402 0.96
5 35 0.0017 0.12 12.6 3.2 2 23 411 432 410 433 0.95
6 35 1.4e-05 0.00095 19.2 0.1 1 23 442 465 442 465 0.97
7 35 3.4e-06 0.00022 21.2 0.8 2 23 472 493 472 493 0.98
8 35 0.0048 0.32 11.2 4.0 1 23 499 522 499 522 0.96
9 35 3.9 2.6e+02 2.1 2.1 2 23 800 822 799 822 0.95
10 35 0.36 24 5.3 1.9 6 23 831 848 831 848 0.96
11 35 0.0085 0.57 10.4 2.9 1 23 854 876 854 876 0.98
12 35 0.0016 0.11 12.7 2.7 1 23 884 906 884 906 0.97
13 35 3.3e-06 0.00022 21.2 0.2 2 23 915 937 914 937 0.96
14 35 0.43 29 5.1 1.0 3 23 945 965 944 965 0.96
15 35 0.048 3.2 8.1 0.5 2 23 974 996 973 996 0.95
16 35 5.6 3.7e+02 1.6 0.8 1 23 1004 1027 1004 1027 0.87
17 35 3.1e-05 0.002 18.1 3.5 1 23 1033 1055 1033 1055 0.98
18 35 2.2e-05 0.0015 18.6 3.1 1 23 1061 1084 1061 1084 0.98
19 35 0.00064 0.043 14.0 2.8 1 23 1380 1402 1380 1402 0.99
20 35 0.015 0.99 9.7 5.5 1 23 1410 1432 1410 1432 0.97
21 35 2.5e-05 0.0017 18.4 1.4 1 23 1440 1463 1440 1463 0.92
22 35 2.8e-05 0.0019 18.2 0.1 3 23 1471 1491 1470 1491 0.96
23 35 0.0011 0.072 13.3 0.4 1 23 1499 1522 1499 1522 0.97
24 35 2.5 1.7e+02 2.7 1.4 1 23 1530 1553 1530 1553 0.87
25 35 1e-05 0.00068 19.6 2.5 1 23 1559 1581 1559 1581 0.98
26 35 0.00013 0.0089 16.1 3.2 1 23 1587 1610 1587 1610 0.98
27 35 0.61 40 4.6 1.6 6 23 1916 1933 1916 1933 0.98
28 35 0.0049 0.33 11.2 0.9 1 23 1939 1961 1939 1961 0.98
29 35 0.0015 0.1 12.8 1.7 1 23 1969 1991 1969 1991 0.96
30 35 1.5e-05 0.00098 19.1 0.5 1 23 1999 2022 1999 2022 0.97
31 35 0.12 8.1 6.8 1.1 3 23 2030 2050 2029 2050 0.96
32 35 0.0034 0.23 11.7 0.2 2 23 2059 2081 2058 2081 0.94
33 35 1.5 99 3.4 2.0 1 23 2089 2112 2089 2112 0.90
34 35 6.3e-06 0.00042 20.3 1.6 1 23 2118 2140 2118 2140 0.98
35 35 1.4e-05 0.0009 19.2 1.8 1 23 2146 2169 2146 2169 0.98

Sequence Information

Coding Sequence
atgaattgtttattgtgtttaaaaataattgaagatGTTAAAAATGGTATAGCAATCAATTCCAACGTTTGGCAAGAactaaatatacaatatattatagaaaaatacctTTGGAAAATGgaaaatttaaattctgaCTCGCATGTATGTCAAGCATGTTGGCAGGAATTGTTCAATTTCCATAACTTTTACACTGATATAGAAAAGGctcatacaaatttaaatactttaataaaaacgGAATTAATTTCCGATGATATTTCCAGCGAGAAGAACGAAGTAGTAGAGAAAATAGATAACACTCAACTAGAACCGGAAATACTTCTATTAAAAGAGGAAAATCCTTTGGAAATCTTTGAAAAAGAGGATGTAGAAGAATTTAGTAGTTCCAAGAAACGTTTAAAGCGTAAATGTACATCTAAAAGAGTTAGAAATGATGAACAAACTCCGGAGAAAATTGTTAGGAAAAAACGaactaaaaaggaaaaaagtaaagctgaaacaaaaaaaatagaaagtgAAACAAATCAAGAAAAAACTAATAAGGATTCGGAAAATATCACTAAAGAAAGCAATTCCAATGAAAGTTCTAATGAACAGGAAGATTCAAAATTTGAAAGTGATGATGAAGAACCCACAAATACGGTTGAATCGCTTAAATTGCATGCTCAACGTCAGGAATATGATAAATTCATAGCCGAAAATCTGGAAATAATCTGTACCATTTGTCAAATTCCACTAGAAACATTTTCCATTACCGTTAAACATTATAAGGAAGAACATAATCAACGTGGTTATGCCATTTGTTGTAATCGAAAACTGTATGATCGTTCTGAGATAATGGATCATTTTAAGCTGCATGAAGACCccgaatattttaaatgtaaatattgtaacAAGGTATTATCGAGTCGGGTTTGTTTGAAATTGCATATTAAAAACGTACACGAACACAAGGGCATTGAGTGTGACATCTGTGGAAAAAGTCTGTCAACGGAATTTAGCcttaaaatgcataaattgaTGCATGACgctgaaaataatgaaaaaatcccATGCAAACAATGTGATAAGTCCTACCTCTCGAAATATTCCTTAGCCAATCACATACGCGCTGTACATTTAAAAACTTATCACAAAATTTGTGATTTATGTGGTGCCTCTATATCCGGAAAGTCAAGATTTAAACGTCACATGCTTGAGCATGAAGGTAAACCGCCACCCATAGTAACATGTGAAGTCTGCGGTCGTCGTCTGGCCGATATGAAATGCTTAAAACGTCACATGAATTCTCATCATCCGCCCGAAGGTGTTAAGAATGAATTTAACTGTCCCATATGTAAGAAAATCTTTGCTAGCCCTTATAATgtaaaaatgcatataaaagTTGTACACGAAAATAGTTAtgaaagaaaatgtaatttatgtGAGAAAACCTTCAAAAGACCCGATGCTTTAAAGgATCACATGGCCAAGCATATTGGCAAACCGTTACATTCCTGTGGTTTTTGccctaaaacattttattcgaATGGCCAGATGCATGCTCATCGAAAAAGAGTTCATCCATTGGAATGGCAAGAATCGGATTTGGTAGGTAGTATACAAGTGGACTCCATTAAATGGCAAGAGTtaaatgtgcaaaatttaattgaaaaacatttctGGCCCATGGAATCTATACAAAAATCCGGTTCATGGCTATGTACCGGTTGTTGGCAAGAACTTTACGATTTTCACAAGTTTTACGTACGTGTAGAGGAAGCTCATGCAGAATTGGGAACGTCGTTGAAGAAAGTTGAATCGATCTGCCTAAAAACAGATGAGACACAAAATGAAGATTTTAAGCCTTCCATAGAAAACGTATCATTCAATGAAACACATTTTGAAccagaaatttcattaaaggAAACACTTCATAGTGAAAATCTTCTTGAGGAAGAAGATATGGttataaaagaagaagaacaaaGTGAAGAGCCTTTGGAAGAAGAAAATCTTCCATTTACCAGAAATAAGAAAACACGTCAAGCGAGGAATGTCTTAGAGGAAACTAGTACGGCTCCTGAAGATCCCTTAAGTAAGAagacacaaaacaaaaagaatgcCACTAGAAAACCGAGAACAGCAAAAGTAAAGGATTCTAAAAGATCTAGTGAAAAGGCTGAAACGAATACCACAAAGTTCACTGAAACTACAGAAGATAATCCCATTAAAGATGACCCTGATTTAATGGATACAAATGATGACGAGGGTAATAACTTGGACACAGATACAGACTCTAACTACGAGCCCGACAAAGATGCAACAGAAATCGATGAAAAGAAATCAGCAGGCAAATCTTCGAAGAGTACAAATCATGAAAATGATAAATTCCTAacggaaaactttaaaattacctGCAGTCTTTGTCAAGCTCCAGCTGAAACATTTCATGCTCTCTGCAAACACTTTAAAACAGTACACAAACAAATCGGTTTTGTTATCTGTTGCAAGAAGAAATTCTACAGACGTAGTCTTCTTGTCGATCATGTACATCAGCATGTAGatccaaattattttaaatgtactaTTTGCGATAAAGTAATGGCCGATCGCAAATGTTTGAATATGCACAATAAAACCCATAACGATAAAAAGGAAAAGGTACATCCTTGTGATATTTGCAACAAgaaatttagtatgtatatGTCATTAAAACTGCATAAAATGTCTCATTTATCGGAAGATGAAAAGCATGTGCCATGTACGGAATGTGGCAAGAAgtTTGCCAGTAAATCACTGCTGTCCAATCATGTGCGTTCGgtacatttaaagaaatatataaatatctgcGATATATGTGGCCGATCGATAAGATGTAAGGAAGTTTTTGAGCGGCATATGCTGCAGCATGAAGGCAAACCATTGCCCACAGTGAGTTGTGATGTTTGTGGCCTACTATTGGCTAATAAGCATAGCTTAAAGCAGCACAAACTTATGGTACATCCTGAGGGTGGCAAAAAGGAATTCTCCTGTCCTGTCTGTGCTAAGATCTCACCCAATTTGAAGGCTCACAAAAAACATGTACAATATAATCATGAATGGGGTTACGATCACAAATGTACAATGTgcgaaaaagcttttaaaacggCACACACTTTAACGgaACATATGGCTTCTCATACGGGTACAGTGCTCTATACCTGTCCTTGGTGTCCAAAAACCTTCAATTCAAATGCCAATTTCCATAGTCATCGTAAAAAGAGTCATCGTAAAGAGTGGGAGGAGGCTACACGTAAAAAATATTCAGGCAATTTACCACCAAATTATAATCCACCACCTCCTGCTCCACCTTCAAACAATACTAATGATTGTGAAATACCTCTTTATATCATGGATAAATGTTTGCTTTGTTTATCCATggataaattgtttataaaaattaattcattgcAATGGCAAGAATTCGATGTAAAGTATTTAATAACTAAACATTTGTGGCCCATGGAATTTGCAATACCCACAACAGGTGTTTGTCGAAAGTGTTGGCAAGAACTATATAACTTTAATAAGTTCTATAAGGAAATACAAGAGTCTCACTATAAATTTGatcttattaaaagttttaatgaaaaagaattACAAGAATCTAAAGAAGAAACCTATGAGGAGGAATTAAAAACTCTCGATCatctgaaaaataaaacagaaataacaCAAAACTCCATTGAATACGAGATAGAAGAAATCgaacaaattgaaataaaacaagatCAAACTACTGAAATTACAACAGAGGATCCCCTTAATGAACTACGAGAATTTAAATCAGTTGGAGATAATATCGATTATCACCAACAGGAAAACAGTTTAATGGACAGTTCACATTCAGATTTGGAAACTTTGGAAAATAAAGACGACACTGCagcaacaaattttaatgaatacaaAATTGATGAAAAGGATAAATTTATTGCGGAAAACTTTAATATCAACTGCTGTTTATGCCAAATTACCATGAAAACATTCCATGAGATGTGTCAACATTTCAaagtaaaacacaaaattcGTGGTTATGTGATATGTTGCAACAAAAAGATTTTTAGACGTTGCTATCTGCTCGATCatataaatttccatttaaatccAAACTATTTTAAATGCAATCAATGCGATAAGGTTTTAGCCGATCGCTTATGCTTAAAATCCCATTTGAAGACGCATGAAGATAGTGTGGCAAAAAATCATTCTTGCGATATATGTGGCAAGAGTTTTATGTGCCAATCGAAATTGAAAATTCACAAAACAACACATTTGCCCGATGAAGAAAAACCATTTTCTTGTACAGATTGCGGAAAAAAattTGCCAACAAATATCTACTATCAAATCATGTACATGCGGTACATTTAAAGGTTTATGCCAAAATATGCGATATTTGTGGAAAATCTTTAAGTTCAACGGATGATTTGGAGCGACATATGTTAGAGCATGAAGGTAAACCAGCACCTATGTTTAGTTGCGACATATGTGGACTGATTCTAACAAGTACGAAAGGTTTGAAACGACACAAAAACACAATACATCCAGTAGGTGGACATCAGGAATATACTTGTACAATTTGCTCAAAGATATCACCGAATATTATGGCCCATAAAAGACATATCAAGTTTTCACATGTTATGGGTTTAGACCATAAGTGTAAAATATGTGAAAAGGCTTTTAAAAAAGCAAGAACTTTAAAGGAACATATGGCTACGCATACAGGAACAGTTTTATATACATGCAGCTGGTGTCCAAAAACATTCAATTCAAATGCTAATATGCATAGTCATCGTAAAAAGATGCATCCTGTAGAATGTTGTTTATTATGTTTGGAAACATACAAGGAGCTTGCCGACTGCATAAgtataatttcaaatgaaaaacagGAACTGGATATTAAAAACATCGTAGAGAAACATTTATGGACCATGaaccATATGGAGACACAGTCCTGGTTATGTACTTCTTGCTGGAGAGAATTATatgaatttcataaattttatttgcgtATAGAAGATGCTCACAGAGAATTTGGTTTGCTGATGAAAAATGTCGATGAAAATGAAATTCAACTCAAGAAGACTACAGCAGAATTGGATGAAAGTCCTATAGAcgattttaaggattttttaaatgattatgaATTAAGTGATAATCATTTAGAAGAAGGCAGCATAAtaattgaagaacaaaaaacattaataaaagatGAATTGAATGAAGAGCAAATTAAAGATGATATGCCCCTACTTCAACGGCGTCGAAGAGGTCGTCCTCGCAAAGAAGAAGGTAAAGAGGTCAAGGTAACTAAAACCAAAACGAACAAATGTAAACAACGTAATATCAAAGCAATATTTAATGGTGGTGATGCAGCTATTACtatcttaaataaaactaatgaaaTTGATAACAACCTCTCCACTTGCGGTATTAAACAAGGACCACAAGTGCTAAACTTAGAAGAAGGAAACACTAATTCACTTGATAACAATGattatgaaacaaattttaatgatgATAGCGATCGGGAATCCTTAGAACATAATGATACTCAAACTAATCATTCTGATGCTCCAAAAACCAAACGCAATGAAAGAGACAAATTTCtagaggaaaattttaaaatcaccTGTTTCCGGTGTAATATTCCAATGAAATCCTTCTTTGCTATGTGCAAACATTTCGAGGAAAAGCACGAAGAACGAGGTCATGTCAAATGttgtaataagaaattttatagacGTAGTGTTCTAGTCGATCATGTACATCGTCATTTGGATCCCAACTATTTTAAGTGCAATCAATGCGGTAAAGTGATGGCTGATAGACGTTGCCTGGAGTTGCATGTTGAAATGCATGAAGGTAATGCCGAGAAGAATCATTGTTGTGATATTTGTGGAAAAGGTTTTGCTAAAATTGGTGTTTTAAAAAAGCATAGAATGATACATTTGTCGGAAGAGGAGAAACGTTTTCCATGCTCCGAATGCGGCAAAAATTTTGGCACGAATTATTTACTTTCCAGTCATTATCGTTCAGTTCAccaaaagaaatatgtaaaaatatgtgATATCTGCGGAAAATCTATACGCTGTAAAGACGTTTTCGAACGTCATATGTTACAACATGAAGGTAAAAGTGCTCCCACGGTAAGCTGTGACGTATGCGGTTTACGTTTGACTGATAATAAAGCCTTAAAACGCCATAAAGATATGATACATCCGGTGGGTGGAAAAAAAGAATATACTTGTTCAATATGTTCAAAAATATCACCCAATCTGAAGGCCCACAAACGGCATGTACAGTACAAACACGTCATAGGATATGATCACAAGTGTACGATATGTGAAAAGGCTTTTAAACGAGCTCAAACTTTAAGGGAACATATGGCTTCTCATACGGGTACAGTTTTATATACCTGCCCTTGGTGTCCGAAAACTTTCAATTCTAATGCCAATATGCATAATCATCGTAAGAGGGTTCATCCCAAGGAATGGGAGGAAACATCAAGAAAAAGATATTCTGGAAATTTGCCACCTAATTTTAAACCTCCAACAATAACCCAGTCTACAGATTTTAATGTGCCAATAGATATGTAA
Protein Sequence
MNCLLCLKIIEDVKNGIAINSNVWQELNIQYIIEKYLWKMENLNSDSHVCQACWQELFNFHNFYTDIEKAHTNLNTLIKTELISDDISSEKNEVVEKIDNTQLEPEILLLKEENPLEIFEKEDVEEFSSSKKRLKRKCTSKRVRNDEQTPEKIVRKKRTKKEKSKAETKKIESETNQEKTNKDSENITKESNSNESSNEQEDSKFESDDEEPTNTVESLKLHAQRQEYDKFIAENLEIICTICQIPLETFSITVKHYKEEHNQRGYAICCNRKLYDRSEIMDHFKLHEDPEYFKCKYCNKVLSSRVCLKLHIKNVHEHKGIECDICGKSLSTEFSLKMHKLMHDAENNEKIPCKQCDKSYLSKYSLANHIRAVHLKTYHKICDLCGASISGKSRFKRHMLEHEGKPPPIVTCEVCGRRLADMKCLKRHMNSHHPPEGVKNEFNCPICKKIFASPYNVKMHIKVVHENSYERKCNLCEKTFKRPDALKDHMAKHIGKPLHSCGFCPKTFYSNGQMHAHRKRVHPLEWQESDLVGSIQVDSIKWQELNVQNLIEKHFWPMESIQKSGSWLCTGCWQELYDFHKFYVRVEEAHAELGTSLKKVESICLKTDETQNEDFKPSIENVSFNETHFEPEISLKETLHSENLLEEEDMVIKEEEQSEEPLEEENLPFTRNKKTRQARNVLEETSTAPEDPLSKKTQNKKNATRKPRTAKVKDSKRSSEKAETNTTKFTETTEDNPIKDDPDLMDTNDDEGNNLDTDTDSNYEPDKDATEIDEKKSAGKSSKSTNHENDKFLTENFKITCSLCQAPAETFHALCKHFKTVHKQIGFVICCKKKFYRRSLLVDHVHQHVDPNYFKCTICDKVMADRKCLNMHNKTHNDKKEKVHPCDICNKKFSMYMSLKLHKMSHLSEDEKHVPCTECGKKFASKSLLSNHVRSVHLKKYINICDICGRSIRCKEVFERHMLQHEGKPLPTVSCDVCGLLLANKHSLKQHKLMVHPEGGKKEFSCPVCAKISPNLKAHKKHVQYNHEWGYDHKCTMCEKAFKTAHTLTEHMASHTGTVLYTCPWCPKTFNSNANFHSHRKKSHRKEWEEATRKKYSGNLPPNYNPPPPAPPSNNTNDCEIPLYIMDKCLLCLSMDKLFIKINSLQWQEFDVKYLITKHLWPMEFAIPTTGVCRKCWQELYNFNKFYKEIQESHYKFDLIKSFNEKELQESKEETYEEELKTLDHLKNKTEITQNSIEYEIEEIEQIEIKQDQTTEITTEDPLNELREFKSVGDNIDYHQQENSLMDSSHSDLETLENKDDTAATNFNEYKIDEKDKFIAENFNINCCLCQITMKTFHEMCQHFKVKHKIRGYVICCNKKIFRRCYLLDHINFHLNPNYFKCNQCDKVLADRLCLKSHLKTHEDSVAKNHSCDICGKSFMCQSKLKIHKTTHLPDEEKPFSCTDCGKKFANKYLLSNHVHAVHLKVYAKICDICGKSLSSTDDLERHMLEHEGKPAPMFSCDICGLILTSTKGLKRHKNTIHPVGGHQEYTCTICSKISPNIMAHKRHIKFSHVMGLDHKCKICEKAFKKARTLKEHMATHTGTVLYTCSWCPKTFNSNANMHSHRKKMHPVECCLLCLETYKELADCISIISNEKQELDIKNIVEKHLWTMNHMETQSWLCTSCWRELYEFHKFYLRIEDAHREFGLLMKNVDENEIQLKKTTAELDESPIDDFKDFLNDYELSDNHLEEGSIIIEEQKTLIKDELNEEQIKDDMPLLQRRRRGRPRKEEGKEVKVTKTKTNKCKQRNIKAIFNGGDAAITILNKTNEIDNNLSTCGIKQGPQVLNLEEGNTNSLDNNDYETNFNDDSDRESLEHNDTQTNHSDAPKTKRNERDKFLEENFKITCFRCNIPMKSFFAMCKHFEEKHEERGHVKCCNKKFYRRSVLVDHVHRHLDPNYFKCNQCGKVMADRRCLELHVEMHEGNAEKNHCCDICGKGFAKIGVLKKHRMIHLSEEEKRFPCSECGKNFGTNYLLSSHYRSVHQKKYVKICDICGKSIRCKDVFERHMLQHEGKSAPTVSCDVCGLRLTDNKALKRHKDMIHPVGGKKEYTCSICSKISPNLKAHKRHVQYKHVIGYDHKCTICEKAFKRAQTLREHMASHTGTVLYTCPWCPKTFNSNANMHNHRKRVHPKEWEETSRKRYSGNLPPNFKPPTITQSTDFNVPIDM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-