Lcup002196.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lucilia cuprina
Gene Symbol
-
Assembly
GCA_001187945.1
Location
JRES01001419.1:201322-217492[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.034 2.2 8.6 0.2 2 23 263 285 262 285 0.91
2 28 2.1 1.4e+02 2.9 1.5 6 23 294 311 291 311 0.98
3 28 1.6e-05 0.0011 19.0 1.6 1 23 317 340 317 340 0.97
4 28 3.9e-07 2.6e-05 24.1 1.7 1 23 346 368 346 368 0.98
5 28 8.2e-05 0.0054 16.8 0.1 1 23 375 398 375 398 0.97
6 28 0.027 1.8 8.9 0.3 2 23 403 424 403 424 0.96
7 28 0.00088 0.059 13.5 0.1 1 23 432 455 432 455 0.91
8 28 0.0028 0.19 12.0 0.2 1 23 462 485 462 485 0.95
9 28 2.8e-06 0.00019 21.4 2.8 1 23 491 513 491 513 0.98
10 28 0.00015 0.0098 16.0 6.7 1 23 519 542 519 542 0.98
11 28 0.057 3.8 7.8 0.8 2 23 793 815 792 815 0.94
12 28 0.35 23 5.4 0.2 6 23 824 841 824 841 0.98
13 28 2.9e-05 0.0019 18.2 1.6 1 23 847 870 847 870 0.96
14 28 0.0023 0.15 12.2 1.6 2 23 877 898 876 898 0.97
15 28 8.6e-05 0.0057 16.7 0.1 1 23 905 928 905 928 0.98
16 28 0.1 6.9 7.0 0.4 2 23 933 954 933 954 0.96
17 28 0.017 1.1 9.5 0.1 1 23 962 985 962 985 0.91
18 28 0.00065 0.044 14.0 0.0 1 23 992 1015 992 1015 0.96
19 28 1.3e-07 8.7e-06 25.6 2.1 1 23 1021 1043 1021 1043 0.98
20 28 0.00034 0.022 14.9 5.9 1 23 1049 1072 1049 1072 0.98
21 28 0.0016 0.11 12.7 0.3 2 23 1368 1390 1367 1390 0.93
22 28 3e-05 0.002 18.2 3.9 1 23 1423 1446 1423 1446 0.95
23 28 3.3e-05 0.0022 18.0 4.6 1 23 1455 1477 1455 1477 0.98
24 28 0.00041 0.027 14.6 0.8 1 23 1483 1506 1483 1506 0.97
25 28 0.074 4.9 7.5 0.2 2 23 1511 1532 1511 1532 0.95
26 28 0.016 1.1 9.6 0.7 2 23 1541 1563 1540 1564 0.93
27 28 0.0025 0.17 12.1 0.1 1 23 1570 1593 1570 1593 0.96
28 28 4.5e-05 0.003 17.6 0.1 1 23 1599 1621 1599 1621 0.99

Sequence Information

Coding Sequence
atgtctataaaattatattgctGCTTGTGCTGCTCACCTAGCAATGAATATAAATCATTACAAAACGAACTGGGGGAATGCAATGAAATCTATGAAAtgacagtaaaatattttgatccCATGTTACTCACAGagtataataatacaaaatgtttgaatgataataaaatactttGCCAGGACTGTTGGTTGCACATAAAAGATTTTCATGAATTTCAACAGAACGTAATAAAAACAAGAACTTTACTGGAAGAGACAGAGATTAAGCAGTTGccattgcaaataaaattagaGGAGGAACAGGTTTGCTCTGgaacaaataatgaaaacaaagatGTGGCTCAAGGTGATGAGGAATTGACacattttgaagatattttaataaaaaatgactCAGAAGATGATGAAGACGCCCTAGGCGATAATGATGTTGGAATATTTGATCATGAAGAAGATTATGACGATGATGAGGATGAAGATGATCAAAAAcctttaattgaattaaaaaaatctaaaaagtcTGTGAATTTAACCGACAAACATCAAACTGAAGATAAAGCACAAAATGGGCCAGATGATGAGAAACCTAAAGCACGTAGAGGTCGTAAAcctaaagattttaataaagaacaagAGGGAGAAAATATCGATTATTTGGAAAAACCAcctagaaaaaagagaaaaatgaaTGACACAGAAAAACCTAAAAAGAATTCTCGCATCAATTCTGGTCTAGAGAAAGGTCGAGAATCTGATGAATTTATAGCGGAATGGAAACCTTTACTGGAGTGTGATATCTGTAATGAAACATTTCCTGTTTTTGATTTATTGAAAGGacattttaaagataaacaTAATGCAAGATGTTATATTAAATGTTGTGAACGTAAATTTTATCGACGTTGTGTGCTAGTCGATCACATACGGTTGCATATTAATCCGGAAACCCATAAATGTGATATATGTGGTAAACCCAGTTCTAGTAAATACAATCTGAAACTTCACAAGAAAGTTGTGCATGAAGAAACTGAACAATTTGAATGTGAAATTTGTCATAGGTCGTTTAATCAAAAACCCAATTTGGAACGTCATTTACTAACACATGCTACGGGCAGTAAAgatttcatttgtaaggaatgCGGTAAGGGTTATGTACTAGAAGTTCAACTTAAATCACACATCAAAACGGTACATAGTGATAATCGTGTATGTGATCAATGTGGTAAAACTCTGCATGGAATTGGAGCACTCAAGAAGCATCTAATGGAACATGCTGGCATTGAAAGACCTAAATATCCATGTGATGAATGTGGTGCCCAGTTAAGATCTCGCGGCAATTTAAGACGTCACAAAGCAGCGTACCATAATGATGGTTCTACCATTTATGTTTGCAGTATTTGTGGTAAAGTAGCAGCCAGTGAATATGGTCTATTGACACATAAAAAACATGTCCATCAAGAGGAGCGTAAGCACAAATGTACATATTGCGATAAGGCATTTAAACGTCCGAAATTTCTTCGTGAACATATTGCCACACATACCGGCGAGGATCTGTATCAATGTCCTCATTGTCCACAAACCTTTAAGGTTAGCTCCAATATGCATCATCATCGTAAAAAAGCTCATCCCGTAGAGTTTGAAGAGGGCAGGAAAAATCGTTTACAATTGCGTAAAGTCGATATAACACAATTAATTACCGACgaagaatttcttaaatatcCACAAGAAAATAAAGTTCTTTGCCACGACTGTTGGGTGCCTATTAAAGAGTTCCATGAATTTCAGCAGAATGTTATAAAGACACGTACATTGCTTGAGAAATCGGATATAAAACAATTGCCATTAACTATTAAAACGGAAAGTGAAATTGGGCTGGATGAGGagaaagtaaattttgaatatgatgatgatagatattttgataaaagtGACGATGATAAAGAGGATGATTATGAAATTGGTTTCGATGATATTAGTGTTAAAAATGATTTAGAGGAGAACTCAGTAAGTACAGATGATGAAGATGACGAGAAGCCTTTAATAAGCTGGAAAACAAGAAAGGTAGttgataataaaacaaatgaaaatgatgCGAGTAATAAGAGAATAGATTCCGAGAGCTCTATTCAAAAACCAAAAGGAAAACGAGGTAGAAAACCCAAAAATGTAGCTAAGACAAAGGGAAAAGGAGAACAGAATGATAATGAAACTGAAAATACAGACCAGGATGGAAAcgataataatataaaaacaaaaaaagctaaattaaataataatgatgttgacgatgataaacaagaaaaaagcaattctaaatttaatttagaaaaagcaCGAGAATCTGATGCATTCATCAGGGAATGGAAACCCATATTGGAATGTGATTTATGTGAAGAGTCATCTACAAGTTTTGATAAATTGCGTACACattttagagaaaaacataaaactagaTTCTATATAAAGTGTTGTGAGCGTAAGTTCTACCGACGTTATGTCTTAGTTAATCACATACAGCTACATCTTAATCCGGAAACACACAAATGTGACATATGCGGAAAAGTAAGtgctaataaaaataatcttaaattgCATAAACGATTAATGCACGAAGAAATCGAACAGCTAGAATGTGAGGTttgtcataaattatttaatttaaaaacctcATTAGATCGTCATTTACTCACCCATGTAACGGGCGATAAGGACTTTGTGTGTCAAGAGTGTGGCAAGGGTTATGTGCTGGAAGTTCAACTTAAGTCACACATTAAAACCGTTCACAATGTGGATCGTGTGTGCGATCAGTGCGGAAAAACTATACACGGTATACAGGCTctgaaaaaacatttaatggaACATGCGGGCATTGCAAAACCTAAATTTCCCTGTGACGAATGTGGTGTCGAGTTGAATTCTCGTAATGGCCTTAAACGTCATAAGGCTGCCTTTCATCATGATGGTTCAACGATTTATGTTTGTGGCGTTTGTGGTAAAGTTGCGTCCAGCGAAAGTGctttattaaatcataaaaaatatgttcatgaAGAGGAGCGTAAACATAAGTGTACTTATTGCGATAAAGCCTTTAAACGACCAAAAAATCTACAAGAACATATAGCCACTCATACCGGTCAGGATCTGTATCAATGTCCTCATTGTCCGCAAACATTTAAAGTTAGCGCTAATATGCATCATCATCGTAAGAAAGTACATCCAGTGGAATGGGAAGAGGGTAGAAAGAATCGTTTACAAGTACCTAAAGTTGATATAAATCATGTTAAGAATCAAGTTTTTCTTAACTCACAACAATATCCACAACTATCTATGGTTATTTGTATGAAATGCTGGCATCACATCAATGATTTTCATAGTTTCCAACAGACAGTACTCAATGCTCAAACAAAACTAGAGCaggaatttaaacaaattgttaccAGCATTAAATTGGAAGAAGATTTGTTAAATGGTTCAGAGCAACCATTAACTATTAATACCCAAAATACTGAGGAACAGGCTTTATATCATAATGTCTTTAATAACGTTTGTGTGGATGTGGAGgagaaaaatgaaatatttctacCAGACTTAGATGTGGACGACATTAAGGATGATAATCCTTTTTCAACAGATGATGAAAAGCCTTTATTAGATAGTATACCCTTAAGCACAAGAAGAAAGCGCGGAAGAAAACCTAAAAAAGAAGAGGATATCGATAAGGATAACTCCAGTGTAAAACGCACAAGAAAAcctagaaataaaaacaatacagaAAGTAAAACCCAGTCGAAAACCACCTTAAAGCgcaaagcaaaaataaaagatacAAATGATAAAATTGCTGCAGTTAAAACGGAAAATGAAAcagaaaattctcaaaaaaatgcAGAAAACAATGAACAGGATACTAATATTTCCTCAAATgaggatgacgatgatgattatGATATTGAACACGATGagaatgataatgatgatagcGATAATAATCATCATCAAGATGATCCAGATGCCTTTGTTTCATCTAATGATAAACAGAAGCCGggcaaacaaaaaactaaagaaatcgATGCATTTATTGCCGAATGGAAACAGGAATTGGAATGTGACATATGTAATCTTGCTTTTACAAATTTAACTTTTctaagaaaacattttagcaTAGAACATCCCAAGCAGAAATGTTATGTTTCCTGTTGTCAACGTAAATTAAAACATCGTTTTGATATAGTCGAACACATACGCTATCACATAGATCCGAACACTTTTAAATGCAAGCTATGCGATAAGGTTTCTACCAATAGCCGTAATCTTAACAAACATATGCATGAGAAACATACAGCCGAAGGTCAAGAGCGTCCTTTTGAATGTACAATTTGCCAAAAACGTTTTGCTAAGAAATGCACTCTGAAAACGCATATGGAAACACACGATACAGGCAAAGATTATAAGTGTAGCGAATGTGGAAAAGGTTTCTCTACCGAACAACGCCGCAAAATACATGAACGTATGGTTCACAATGTTGATCGTGTATGCGACCAATGTGGCAAAACTATACATGGTGTTTATGCTCTAAAACAACATATACTCGAACATGCTGGCATTAAAAAACGTAAATGGCCCTGTGATCAATGTAATGCTGAACTAAATTCTCGTTCTAGTTTAAAACGTCACAAAACGGTGGCACATCATGATGGTTCTACGGTGTATGTGTGTAGTGAATGTGGTAAAATTGCTCCTACCGAGACGGCGTTACGTAGTCACAAAAAATATGTCCATCAAGCAGAGCGTAAATTTAAATGTACCATTTGTGACAAAGGCTTTAAAGTTGCCATTGTATTGCGCGAACATATGGCTACTCATACGGGAGAAGATTTATATCAGTGA
Protein Sequence
MSIKLYCCLCCSPSNEYKSLQNELGECNEIYEMTVKYFDPMLLTEYNNTKCLNDNKILCQDCWLHIKDFHEFQQNVIKTRTLLEETEIKQLPLQIKLEEEQVCSGTNNENKDVAQGDEELTHFEDILIKNDSEDDEDALGDNDVGIFDHEEDYDDDEDEDDQKPLIELKKSKKSVNLTDKHQTEDKAQNGPDDEKPKARRGRKPKDFNKEQEGENIDYLEKPPRKKRKMNDTEKPKKNSRINSGLEKGRESDEFIAEWKPLLECDICNETFPVFDLLKGHFKDKHNARCYIKCCERKFYRRCVLVDHIRLHINPETHKCDICGKPSSSKYNLKLHKKVVHEETEQFECEICHRSFNQKPNLERHLLTHATGSKDFICKECGKGYVLEVQLKSHIKTVHSDNRVCDQCGKTLHGIGALKKHLMEHAGIERPKYPCDECGAQLRSRGNLRRHKAAYHNDGSTIYVCSICGKVAASEYGLLTHKKHVHQEERKHKCTYCDKAFKRPKFLREHIATHTGEDLYQCPHCPQTFKVSSNMHHHRKKAHPVEFEEGRKNRLQLRKVDITQLITDEEFLKYPQENKVLCHDCWVPIKEFHEFQQNVIKTRTLLEKSDIKQLPLTIKTESEIGLDEEKVNFEYDDDRYFDKSDDDKEDDYEIGFDDISVKNDLEENSVSTDDEDDEKPLISWKTRKVVDNKTNENDASNKRIDSESSIQKPKGKRGRKPKNVAKTKGKGEQNDNETENTDQDGNDNNIKTKKAKLNNNDVDDDKQEKSNSKFNLEKARESDAFIREWKPILECDLCEESSTSFDKLRTHFREKHKTRFYIKCCERKFYRRYVLVNHIQLHLNPETHKCDICGKVSANKNNLKLHKRLMHEEIEQLECEVCHKLFNLKTSLDRHLLTHVTGDKDFVCQECGKGYVLEVQLKSHIKTVHNVDRVCDQCGKTIHGIQALKKHLMEHAGIAKPKFPCDECGVELNSRNGLKRHKAAFHHDGSTIYVCGVCGKVASSESALLNHKKYVHEEERKHKCTYCDKAFKRPKNLQEHIATHTGQDLYQCPHCPQTFKVSANMHHHRKKVHPVEWEEGRKNRLQVPKVDINHVKNQVFLNSQQYPQLSMVICMKCWHHINDFHSFQQTVLNAQTKLEQEFKQIVTSIKLEEDLLNGSEQPLTINTQNTEEQALYHNVFNNVCVDVEEKNEIFLPDLDVDDIKDDNPFSTDDEKPLLDSIPLSTRRKRGRKPKKEEDIDKDNSSVKRTRKPRNKNNTESKTQSKTTLKRKAKIKDTNDKIAAVKTENETENSQKNAENNEQDTNISSNEDDDDDYDIEHDENDNDDSDNNHHQDDPDAFVSSNDKQKPGKQKTKEIDAFIAEWKQELECDICNLAFTNLTFLRKHFSIEHPKQKCYVSCCQRKLKHRFDIVEHIRYHIDPNTFKCKLCDKVSTNSRNLNKHMHEKHTAEGQERPFECTICQKRFAKKCTLKTHMETHDTGKDYKCSECGKGFSTEQRRKIHERMVHNVDRVCDQCGKTIHGVYALKQHILEHAGIKKRKWPCDQCNAELNSRSSLKRHKTVAHHDGSTVYVCSECGKIAPTETALRSHKKYVHQAERKFKCTICDKGFKVAIVLREHMATHTGEDLYQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-