Lcup005811.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lucilia cuprina
Gene Symbol
-
Assembly
GCA_001187945.1
Location
JRES01000455.1:35458-58215[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 0.016 1.1 9.6 0.7 1 23 237 259 237 259 0.98
2 35 0.00019 0.013 15.6 1.3 2 23 270 291 269 291 0.97
3 35 0.00015 0.0098 16.0 0.3 1 23 297 319 297 319 0.94
4 35 0.00064 0.043 14.0 1.1 1 23 325 347 325 347 0.94
5 35 0.00064 0.043 14.0 4.4 1 23 354 376 354 376 0.97
6 35 4.1e-05 0.0027 17.7 1.9 1 23 382 404 382 404 0.97
7 35 0.00064 0.043 14.0 3.3 1 23 410 432 410 432 0.98
8 35 0.011 0.76 10.0 0.1 1 23 438 460 438 460 0.96
9 35 0.0021 0.14 12.3 1.0 1 23 707 729 707 729 0.95
10 35 0.00027 0.018 15.2 1.8 1 23 739 761 739 761 0.99
11 35 2.6e-05 0.0017 18.4 0.3 1 23 767 789 767 789 0.95
12 35 6.6e-05 0.0044 17.1 0.1 1 23 795 817 795 817 0.96
13 35 0.00035 0.023 14.8 1.4 1 23 824 846 824 846 0.96
14 35 2.5e-05 0.0017 18.4 2.6 1 23 852 874 852 874 0.97
15 35 1.2e-05 0.00083 19.4 4.7 1 23 880 902 880 902 0.99
16 35 0.025 1.7 9.0 0.4 1 23 908 930 908 930 0.98
17 35 0.0074 0.49 10.6 2.7 1 23 1007 1029 1007 1029 0.98
18 35 2.8e-07 1.9e-05 24.6 1.6 1 23 1036 1058 1036 1058 0.99
19 35 0.00033 0.022 14.9 0.1 1 23 1064 1086 1064 1086 0.93
20 35 3.6e-07 2.4e-05 24.2 0.8 1 23 1092 1114 1092 1114 0.98
21 35 0.0024 0.16 12.2 3.6 1 23 1121 1143 1121 1143 0.96
22 35 0.0013 0.088 13.0 2.5 1 23 1224 1246 1224 1246 0.98
23 35 5e-06 0.00033 20.6 0.5 1 23 1256 1278 1256 1278 0.98
24 35 2.2e-05 0.0014 18.6 1.6 1 23 1284 1306 1284 1306 0.92
25 35 3.4e-06 0.00023 21.1 0.1 1 23 1312 1334 1312 1334 0.97
26 35 0.00016 0.011 15.8 1.1 1 23 1341 1363 1341 1363 0.96
27 35 1.9 1.3e+02 3.0 1.1 1 11 1369 1379 1369 1385 0.83
28 35 7.9e-05 0.0052 16.8 1.3 1 23 1611 1633 1611 1633 0.98
29 35 2.5e-07 1.7e-05 24.7 0.7 1 23 1649 1671 1649 1671 0.99
30 35 2.2e-05 0.0015 18.6 1.3 1 23 1677 1699 1677 1699 0.95
31 35 0.018 1.2 9.4 2.0 1 23 1705 1727 1705 1727 0.95
32 35 0.00012 0.0078 16.3 0.9 1 23 1733 1755 1733 1755 0.96
33 35 0.0022 0.15 12.3 5.1 1 23 1761 1783 1761 1783 0.98
34 35 4.2e-07 2.8e-05 24.0 0.7 1 23 1789 1811 1789 1811 0.98
35 35 0.0034 0.23 11.7 2.3 1 23 1817 1839 1817 1839 0.98

Sequence Information

Coding Sequence
atgtattttaacaaaaacagagaacatttcttattttattatgaattaATAATGGAAAATGTATGTCGTACCTGCATGCTAAATATAGCAGACCAGTTAGATAAGGAGCaagatattaatgaaattgaaatgataTCAATTTTTATTGAGAGCAAAATGGAAAAACTCAGCCtgaaagaattaataaaaacagcagtaccacaaataaaaatagaagaaaatgaTCAATTGCCAAAAAGTATATGCCAAAAATGCTTGGACAAAATCAGAGAAATCTATAATTTTCAACAGAAATGTGTCAACATAgaagaaaaattctataaaatgttaGAGGAGGGCGATTTAAGTGATTCACCCAATAACATTGACTATCTAGAGGAGCAGCTTATTAAAACTGAAATGATAAATAGCTATTTGAGCGAGGACAATTCTATGGATTACAATAATGAACAGGACAGATTTAACGAAGATGAAATAAGTCGTGTGGATACTGGCAATAATTCTATTGATATATTATGGCAAGGCAGCGGCGAAAGCGATTGCTTGGAAAATCAACTACAAAGTAAatcaaaagatgaaaaaaaggCGAACAggagcaaaagaaaaaagaaagaaaatacaacaaaaaatgaaaaacccAGAGAAAAGTTAAAGTCAACATCCAGAAGACGAAAAGATAAATCAAATGAAtctgaaattaaagaaatgtatCCCTGCGGTAAGTGTCAGAGGAAATTAATATCTAAATTATCATTTATTAAACACCAAGAAATGCACTTGAGAAAGGACAGAGAAGAACAGGAATTAAAATGTAGTATTTGCAACTTGGAGTTTTCTGAAAAAACTGCTTTTAAAAATCACCAACAAACACATACagccGAAAAAACTTTCTTATGCTCACAATGTGGCAAAGGATTTGCTTCAGCTGGAAGTTTAAAACAGCATTCTCTTCGTCATTTAGACAAGAAACTCTATCCCTGTACAGATTGTCCAAAATCTTTTCCAACTAAAAATGATCTCCTTTGCCATTATGAAATTCATAAAGCCAAACCACGAATTCATGTGTGTGATGTGTGTGGACGTGGTTTTCACAAACAATTCTTATTAAAGCAACATCAAAGATATCATAACGATGAAAGACCATTTGCCTGTGAATTTTGTGAAAAACGATTTGTTACAAGTGAAAAACAACAGCGACACATGAGAACACACACAGGTGAAAAACCATATCGCTGTAAATACTGTGACCGAGCATTTGCTCAAAGTAATGATTGCATCAAACATTTGCGACAACATTTGGGGGATAATGTTTATATGTGTGAATTGTGTCCATTAAGATTTCCTTTGGCCAGAGATTTGCGAGCACATTTTGCTAGCCATAAAGACGACGATGATGAAACGCGAGCTCGAAATCTTAAAGCTCGTAAACAGCAAGAAatggcaaacaaaaataaagtaaaaatgaaaACGCCACAAATGGTGTCCATATTTACAGTTCCGGAGGAAgccaaagaaaaacttaatttaatggAGCTGATTAAAACTACAGTACCACAATTGAAAATCGATGAAAATGATCAGTTGCCGAAGAATGTGTGTGTCGAATGCTcggaaaaaatcaaagaaatgtataattttCAGCAGACATGTCTAAGTAATGAacataaattctataaaatgttaGAAGGAGACGATGATGCCATTAATCCATTCAATGATACAGAGGACCATGAAGATGTCTTTAAGACTGAATTTGATGATTCGTTCATTGAGGAGAATTCTTTACAGACTGACGAAGAAATGATTATGGAAGAGGAAATAAATAGAGCAGCCGAAGCAAAAGAAGAATTCATCGAAAGCTACAGTGATTGTAGTATTGACTTAGTTTgggatgatgataataatagtGATGCAGATTGGAATGAAAAGAAAGTGACAagtaaattgaaaaaaagtaaaaaacacaaaaatgaaCTGGTTGATGATGAAATATTCAACGTTTTTTGTGCGGATGAGAAAAACGAAGATGATAATAAttatgaagatgatgatgaagaattTAAAAGCAGTACAAcgaaaagaacaacaataacaaaagaaatgaaaactaaaGGAAATTATCCGTGCAAACGAtgcaagaaaatattaaaatcaaaagattcATTATTAAGACACGAAGGAAGACACGAAAAAAGAGACAAAGAAGGacgcaaatatgtatgtaacatTTGCAATAAAGCATTTCATTATGGTTCTGTATTGAGGGAACATCAAAGAAAACATGTTGGCGAACGTCCTTATCTGTGTTCCGAGTGTGGCAAAGGCTTTACATCGGCTGGAAGTTTAAAGCAACATTCACTACGTCATTTAGAGGAAAAACAATTTCCTTGTCCCGACTGCCCCAGATCGTTTCCTACCAAAACTGATATGCTGTCTCATTATGATATTCACAAGGCTAAACCAAGAAATCACATTTGTGATGTTTGTGGTCGTGGATTTTACAAACCATACTTGTTAAAACAGCACAAAATGTATCACAACAATGAGAGACCATTTGCCTGTGAATATTGCGATAAAAgTTTTGTTACGCACGAAAAAGTCAAACGTCATACCCGCATTCATACTGGTGAAAAGCCCTACAAGTGTAACTATTGTGTGCGAACATATTGTCAGTCAAGTGAATTAATGAAACATTTACGTTCACATTTGGGTGAAAATGTTTATCAGTGCGAATTGTGTCCGGTTAGATTAAAAACCGTTAAACTTTTACGCAGCCACTTTGCAACACACAAAAACGATGATGAAGAAACAAAAGCCCGCAATTTAGCCGAACTTAATGCATTGGAAATGAAAGGCATtaaaactaaaaaaacaaaacattcaaAAACACAACAGATCGATGATGATCGCTTAAAAGATGCTGAAAATATAACAATGGACAATGCTAAACGACATAAAGTAGCAGCAAGAAAACAGAAATGCATAAAAGAAAATCCACTTGATggccaacaaaaattttatccttgcaataaatgcaaaagaaaactgaaaacagaattgtcatttaaaaaacatCAAGAAATGCACGACAGCaaagaacatacatacaaatgttccATATGCAAACAAGaatTTGAAGATAAATCCTCGTTAAAAGATCATATGCGTACACATAGtgGCGAGAAAGTATTTTTATGTCCAGAATGTGGCAAAGGTTATACCACAGCAGGTGGTTTAAAAGAACATTCATATCGCCATTTAAgcgaaaaaaactttcaatgtCCTGACTGTCCACGCTCGTTTACCACCAAATCGGATTTAGTCTCCCATCATATCATACACAAAGCTAAACCAAAAAATCATATTTGCGACATTTGTGGTCGTGGTTTTCACAAGCCATTCCTcttgaaaaaacacaaaatgtatCATAACAATGATCGACCATTTGCTTGTGAATTTTGTGAAAAACGaaaaactaaagtaaCTGATAAATCTGCAATTCTCAAAAGAGAAGAAGTTGATGATGAGGTATTTGAAACACTTGAATTTGACGACGATGAGGATGTTAAAGATGATGgggacgatgatgatgatgatgaggactACGAGGAGGAGTTTAGAGCAAAAATCTCAACTACAAATAAACAACACATAACTGTTGAACAAGTTTATCCCTGTGACAGATGCAAACGGAAACTAAAATCGAAATTTTCGCTTAAAAAGCATTTAGAAATGCACGCTAAACGCGATAACGAAGAACCAAAATTTGTATGCAATATATGTGATAGAgGATTCACACAAGGTTATATGCTAAAAGATCATCTGCGTACTCATAGtgGTGAAAGACCATTTTTATGTTCAGAGTGTGGTAAATCCTTTACCTCGTCCGGTAGTCTTAAACAACATTCATTTCGACATCTCAATGAAAAACTCTTTCCCTGTCCAGACTGTCCGAAGTCCTTTCCAACTAAAACTGATTTGGCTTCACACTATGATGTTCATAAAGCCAGACCTAGAACTCATATTTGCGATATATGTGGTCGTGGATTTCCAAAAccctttttattgaaaaaacacaaaatgtatCATACAAACGATCGGCCTTTTTCTTGTGAATATTGTGATAAACGAACCTGCATGAATGGAGAAGTTGAAGATGAAAAAGAAACTAAAGACAATAAAcgcaaaacaatttcaattttcaatGAACCTCAAAGtaatgaatgtaaaaatataacaattatggAATTACTTATGCTTACCACACCACAACTAACCATTGAGACAGATGATATGTTGCCCAAAACTGTATGCGAAAATTGCTTGGAAAGACTTGTTAATGCTCATGCGTTTCAACAAATGTGTATAAAAGTAGAGGAGAAGTTTCGTCAAATGATTAAAGATGATAAACCAGCTGTTAATTCACAAATTATCACGGATCCCCtaattgataatattttaaagattgaaATAGATGAAGCATTAGAACAAGAGACTGCTCTTGagtcaaaaaacttaaaagaggATGTAgaagatataaaatttgaaaaggaAGAAAATCATTGGGAAGACTATAGTGATAGTGAAGAATTTTGTGATGTTGACAGTGACAAGGATAGTGAATGGGAGTCTTCGAATGTAACAAAAAGTAAAAAAGGTGCAAGGGCTAATAGCAAAAAggttaaagaagaaaaagatgTGTCTTCTAGCGAAGTTAAAGATTTAAATGATATTGAAGATAAAAAAGATAACATCACATCAGAGAAAATTAAAGAATCTAAGAAAAACTCCAAGGAAACAAGTAATTCTAAGGATAACGaaagtaaaagttttgtatGTGATGAGTGTGGCAACCGTTTATCAACgcgaaaaagtttaaaacggCACAAACGTATACACCTTAGACCCGCAGATTCAGGTGGAGAGACAAAAATCCGAACTAAATATGAATGCGAAGTTTGTAAAAAGGTCTTTCAGCAATCGAGTTCTTTAAAGGATCATATGAGAATACATACTGGAGAACAGCCTTATCTATGTTCAGAGTgtggaaaagcttttaaaagtttaagcaATATGAAGCAACATTTCCTACGTCACGGTACTGATCGTCCTTATGTCTGCCAACATTGTCCGAAAAGGTTTCCATGCCTAAGTGATTTGGCATCGCATAAAGTAgtgcataataaaataaaatcacataTTTGTGATATATGTGGTGCGGGTTTTACGAAACCATATCTtttgaaaaaacacaaaatgtatCATACAGGTGAAAGAAATCATAAATGTGATTACTGTGATATGagATTCGTTTTAGCTGATCAGTGTCGTAGGCATATGCGCACCCACACAGGAGAAAAaccatacaaatgtaaatattgtgAAAGAGCATTTGCACAAagtaatgatttaataaaacatatgcGTGGGCATATAGGAGACAATGTCTATAAATGTGATTTATGTCCACAAGGTTTTCGTTTACAATGTGATTTGCGCGCCCATTTCTATACTCATAAAGATGACGATGAAGAAACACGAGCTCGCAATTTGGAAGCTCTTAAGGAGGAGGAACGAAGATTACAAGCAAAATTCGGACTTGTAGGtagtacataa
Protein Sequence
MYFNKNREHFLFYYELIMENVCRTCMLNIADQLDKEQDINEIEMISIFIESKMEKLSLKELIKTAVPQIKIEENDQLPKSICQKCLDKIREIYNFQQKCVNIEEKFYKMLEEGDLSDSPNNIDYLEEQLIKTEMINSYLSEDNSMDYNNEQDRFNEDEISRVDTGNNSIDILWQGSGESDCLENQLQSKSKDEKKANRSKRKKKENTTKNEKPREKLKSTSRRRKDKSNESEIKEMYPCGKCQRKLISKLSFIKHQEMHLRKDREEQELKCSICNLEFSEKTAFKNHQQTHTAEKTFLCSQCGKGFASAGSLKQHSLRHLDKKLYPCTDCPKSFPTKNDLLCHYEIHKAKPRIHVCDVCGRGFHKQFLLKQHQRYHNDERPFACEFCEKRFVTSEKQQRHMRTHTGEKPYRCKYCDRAFAQSNDCIKHLRQHLGDNVYMCELCPLRFPLARDLRAHFASHKDDDDETRARNLKARKQQEMANKNKVKMKTPQMVSIFTVPEEAKEKLNLMELIKTTVPQLKIDENDQLPKNVCVECSEKIKEMYNFQQTCLSNEHKFYKMLEGDDDAINPFNDTEDHEDVFKTEFDDSFIEENSLQTDEEMIMEEEINRAAEAKEEFIESYSDCSIDLVWDDDNNSDADWNEKKVTSKLKKSKKHKNELVDDEIFNVFCADEKNEDDNNYEDDDEEFKSSTTKRTTITKEMKTKGNYPCKRCKKILKSKDSLLRHEGRHEKRDKEGRKYVCNICNKAFHYGSVLREHQRKHVGERPYLCSECGKGFTSAGSLKQHSLRHLEEKQFPCPDCPRSFPTKTDMLSHYDIHKAKPRNHICDVCGRGFYKPYLLKQHKMYHNNERPFACEYCDKSFVTHEKVKRHTRIHTGEKPYKCNYCVRTYCQSSELMKHLRSHLGENVYQCELCPVRLKTVKLLRSHFATHKNDDEETKARNLAELNALEMKGIKTKKTKHSKTQQIDDDRLKDAENITMDNAKRHKVAARKQKCIKENPLDGQQKFYPCNKCKRKLKTELSFKKHQEMHDSKEHTYKCSICKQEFEDKSSLKDHMRTHSGEKVFLCPECGKGYTTAGGLKEHSYRHLSEKNFQCPDCPRSFTTKSDLVSHHIIHKAKPKNHICDICGRGFHKPFLLKKHKMYHNNDRPFACEFCEKRKTKVTDKSAILKREEVDDEVFETLEFDDDEDVKDDGDDDDDDEDYEEEFRAKISTTNKQHITVEQVYPCDRCKRKLKSKFSLKKHLEMHAKRDNEEPKFVCNICDRGFTQGYMLKDHLRTHSGERPFLCSECGKSFTSSGSLKQHSFRHLNEKLFPCPDCPKSFPTKTDLASHYDVHKARPRTHICDICGRGFPKPFLLKKHKMYHTNDRPFSCEYCDKRTCMNGEVEDEKETKDNKRKTISIFNEPQSNECKNITIMELLMLTTPQLTIETDDMLPKTVCENCLERLVNAHAFQQMCIKVEEKFRQMIKDDKPAVNSQIITDPLIDNILKIEIDEALEQETALESKNLKEDVEDIKFEKEENHWEDYSDSEEFCDVDSDKDSEWESSNVTKSKKGARANSKKVKEEKDVSSSEVKDLNDIEDKKDNITSEKIKESKKNSKETSNSKDNESKSFVCDECGNRLSTRKSLKRHKRIHLRPADSGGETKIRTKYECEVCKKVFQQSSSLKDHMRIHTGEQPYLCSECGKAFKSLSNMKQHFLRHGTDRPYVCQHCPKRFPCLSDLASHKVVHNKIKSHICDICGAGFTKPYLLKKHKMYHTGERNHKCDYCDMRFVLADQCRRHMRTHTGEKPYKCKYCERAFAQSNDLIKHMRGHIGDNVYKCDLCPQGFRLQCDLRAHFYTHKDDDEETRARNLEALKEEERRLQAKFGLVGST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-