Lcup008349.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- bab1
- Assembly
- GCA_001187945.1
- Location
- JRES01001586.1:166692-170391[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-12 8.9e-09 34.6 0.0 4 45 415 456 412 456 0.91 2 2 2.5 3.9e+03 -2.7 0.9 4 20 553 568 553 568 0.86
Sequence Information
- Coding Sequence
- ATGGGTGGCCCACCAGCCCCTACCTCATCAAATAACCCACCAGAGGGTCAAACATATTGTTTAAGATGGAATAATCACAAATCGAATTTGGTTGAGATACTCGATGCTCTCATTAAAGTGGAAAGTTATGTGGACTGTACCATTGTTGTGGATGATCAAGTACAATTTAAAGCTCATCGTGTTGTCTTGGCTGCCAATTCGCCGTATTTTCAGTCTATTTTACAAGATTTACCCATGGATCATTGTAGCATTATATTTCCGGGTGTTAAGGCATTTGAAATGCGCGCCTTATTGGAATATATGTATACGGGTGAGGTAAATGTTACCCAAAGTCAAATACCCAAAATAATGCGTATAGCTGAGGAATTGGAAGTCAAGGGTCTTTTTGATATGGCTGACTTGAAGGAGAAATTCAATAAACTCAGTGAGGAGCATGCTGAAAGATCGGCTAGTAATCCTTATGCAAGCACATCGGCTCCTTCGAATCCCTATTCCTCGGTTACCACCACTTCATCACCCACCGCTGGTCTAACACATAACAAACCTTGCGCCAAGGATTCTGATAACTACCGTCACAATTCCTCCTCCGTGATCTCTACCTCTACAAATATTTCTCCCTCAGCTGCCCCGTCCAGCAGTTCGTCACCGCCCTATAGTAGTTACAAATCTCCCTATACCAGTTTATATAACAAATCACCTGCGCCCTCTGCTAATCCCTCATCCGCCTCAGCCTCCGCCCAGCCTCAATCCACACAACAAACTGCCAGCAATTTAACACCCACCTCAGAACGTTCGTCTGCTCAATGGCCTTTGTCTCCTTCGGCTGCGGCTGCTGCTGCCATGTTGAGTTCTGTTTATGAATCGGCTCCCGATATGAATCCCTTAAAACGTAAAAAGTTATCCTCTATGTCCAGCATGTTAATGAATCGTGATACTCCCATATTGCGTAATGTTTTGGCTCAAGCCAATCCAGCCGATTCGTCACAACAATTGCCTTTATTGTTGCCTAATGCTGGCAATAAAGGGGACAAATCCTCAGGTTCAGCCGACAAAAATAATCATAGTTTCAATGGTTCCGATTATAGTGATAAGAAATACCATGATGAGCCTCATTCTCCCTTTACCGATCGTTCCTTTGAGGATGATGGTTTCGATCCTAAGGGCAGTAATTTCGGTGGCAATTTTGCTGCCAATGGCAATCAAAAACCCGAATGGAAACGTTATAAACAATATACCCGCAGTGATATTATGTCCGCCATCCAGTGTGTACGTGAAGGCATGAGTGCTTTGCAGGCTTCACGCAAATTTGGTGTACCCTCGCGCACTTTGTATGATAAGGTCAAGAAGTTGGGCATTACCACCGGACGGCCCATGAATCGTACCATGAAACGTAGCCCTAGTAGTGTAGAATCCTCTGCGGCTTTCCCTTATGCTCATGGTTATGGTCAAGCTTCTGCGGCAGCTGCCGCCATGCATGATGCTGCCATTAGAGAGGAACGTGAACTTAAAGAACATCATCGCAATAGTGAACATCATCATTTAGCCCCAACTATACCTCATCCTGCTGCAGCTCTCTTAGATCATGCTTTCTTACAGCAGGCTTTGGAAAATCGTGGAGGTGGTGATATAGCAGGTAGAGAAGCTTTACATGCTATGGCTTTGGCTGCTGCTGCTCATGCTGCTGCCAATCGTATGTCCACCAGTCCCGGACCCAATGGCAATGCAGTACGTTCACCCAGTCCCTCTAATTTCGCcctaaaatacaacaatatgcGTAATGCCGAACAAGAGCTAATGGAACGTCATGAATTGGAGCGTGAAAGAGAACGCGAACGTGAATTTGCTGAGAGAGAACGTGAACGTGATCAAGATTTAGAACGTGAACGTAACGATGAAGAAGAAGATGATCATGTAGAAGATTTATCGGTGGCACGTAAAGAGAATAGTTGTTCACCTTTAGAACAAAGAGAAAGACCTGAATCTCCTTACTCACCGGGAGTAACAAATTCTGCCGATAATGATAAAACAGTAATAATGACCACTAAATTACCCTCTAATGCCAGCAGCAGTGATGAAGCTTTCATCACAGAATCTAATCTCAAACGTGAGGTGGTAATAGATGATGTTAGAGCCGACTGA
- Protein Sequence
- MGGPPAPTSSNNPPEGQTYCLRWNNHKSNLVEILDALIKVESYVDCTIVVDDQVQFKAHRVVLAANSPYFQSILQDLPMDHCSIIFPGVKAFEMRALLEYMYTGEVNVTQSQIPKIMRIAEELEVKGLFDMADLKEKFNKLSEEHAERSASNPYASTSAPSNPYSSVTTTSSPTAGLTHNKPCAKDSDNYRHNSSSVISTSTNISPSAAPSSSSSPPYSSYKSPYTSLYNKSPAPSANPSSASASAQPQSTQQTASNLTPTSERSSAQWPLSPSAAAAAAMLSSVYESAPDMNPLKRKKLSSMSSMLMNRDTPILRNVLAQANPADSSQQLPLLLPNAGNKGDKSSGSADKNNHSFNGSDYSDKKYHDEPHSPFTDRSFEDDGFDPKGSNFGGNFAANGNQKPEWKRYKQYTRSDIMSAIQCVREGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTMKRSPSSVESSAAFPYAHGYGQASAAAAAMHDAAIREERELKEHHRNSEHHHLAPTIPHPAAALLDHAFLQQALENRGGGDIAGREALHAMALAAAAHAAANRMSTSPGPNGNAVRSPSPSNFALKYNNMRNAEQELMERHELEREREREREFAERERERDQDLERERNDEEEDDHVEDLSVARKENSCSPLEQRERPESPYSPGVTNSADNDKTVIMTTKLPSNASSSDEAFITESNLKREVVIDDVRAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00258994;
- 90% Identity
- iTF_00921502;
- 80% Identity
- iTF_00921502;