Lcup004307.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- bab2
- Assembly
- GCA_001187945.1
- Location
- JRES01001279.1:13534-70311[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-17 6e-14 51.2 0.0 1 43 666 709 666 711 0.95
Sequence Information
- Coding Sequence
- atggatTTAACAAAAGATATAATTGATTTTACACAGAAAGTAGACTACAGCGATAATATAAAAAGTTCTGAAACTAAAATACTAAGCGGTGAAGATTTTGGTATTTTCAGTAATATGGAAAAGATCAGTAAAATGGCACAAGAAGCCAATGCTTTAAGTAGCAACGAACACAACGCCGAAAAGTTCGAAGCGAAAATGCCGACGGCACAATTACAAAAACCCACAACACCCCAACTTATAGAGAATACCGCCCATGTGTCATCCATAAAGCCTGCCATGGGTAGAGATATATCACCGCCACCTAGACCTTTAACCTCTAGCGAGGTAGTGGGTTTTATAACAACATTAGATGATCCCGAAATGCAATTGGATCCAGCAGTAGTACTCAATAAATCTAGATCTTTACCAGCTTCGCCCAATCACTTAAAAACTACACATATTTccgatttatttacatttaagcCGGAAAAGCAAAGGGAAATGCCCTTAAAACAGACTGGATTTTTGTCTGACAAAAAGTTGAGTAATCTAATTAAACCCAATGCAGAGGCATTGACCCGCAATAATCAACAGTTTTGTTTGCGCTGGAATAACTACCAGACTAATCTTACCAATGTTTTTGATGAACTGTTGCAAAATGAATCATTTGTCGATGTGACTTTAGCCTGTGAGGGCCAATCAATTAAGGCACACAAAATGATTTTATCGGCTTGCTCACCCTATTTCCAGGCCTTGTTTTATGATAATCCTTGCCAGCATCCTATTGTTATAATGCGTGATGTACGATGGCAGGAGTTAAAGGCTTTAATGGAATTTATGTATAAGGGAGAGATCAATGTTAGCCAGGAACAGATTAATCCTCTATTGAAAGTGgctgaaatgttaaaaatacgaGGTTTAGCAGAGGTTAGTCCTAATGGTAATGGCATGGCGGCTCAACAGTTAATACCCGAACAGCGTATGACAGTGTTTGATGATGAAGAGGACGAAGAAGAGGTGGCAGCTAAAAATGATGACACTGAGGAGGATAAAGTGGAGTGTTCTAAAGCCAAACGGGCTAGAATACAAATTTCGGCTAAAACTACTTCGGCTTTAGATTTGAAGTTAGCGGAACAGAGAGTACGCAAGCGTTCTAGGGATGGTTTACTGATCGATGAGGAACGCTTAAGGCCACGTTCCTTGTCACGTTCACCCTCACCCTCACCACAAAACCGAGAAAAATTTGCCGAATCAACAACACCTCCACCCATAGTAATGACTGCTTCTACCATAGTGCGAAATCCTTTTGCTTCTCCAAATCCCAGCAATCAACCGGCGGCTACTAATGCTAGTGCAACTTCAACATCGTCTTCCTCCTCAAGTTCTGGTTCGGGTTCAGCTACATCGGGATCCTCTGTGTCCTCCACACCAGCAGCAGCAAGCTACCGTGCCAGAGAGAGAAGTCTATCGCCTTCCCTTATGACAGCTCATCCTGGAACCAGCAGTCTATCATTAGCTTCACCTAACAGTAGTTCCACCACACCACAAATATCTATACATCCGCATCCAGCTGCTACAGCGGCGGCAGCAGCCGCCTTAGCAAATCCACATCACCCCCACCATCATGCGGCAGCAGCGGCTCAGCAGTTTGCCGCCCAACAGCAGCTTCATGCTGCCCATTCGCATGCCGCCATGGCCAGTGCTTTAGGAGCTTCCTTGGCAGCAGCAGCTGCTGGTGCGGGTTCAGCTTCCGCAGGACCCACCAGCAGCGCCGGCTCATCTTCACATCATGATGATATGGAAATTAAACCTGAAATTGCCGAAATGATACGTGAAGAAGAAAGGGCAAAAATGATTGAAAGCGGACATCCTTGGATGGGTGGTGCCTCAACCTCATCGGTAACTGACAGCTATCAATATCAATTGCAGTCCATGTGGCAGAAATGTTGGAATACTAATCAGCAAAATCTGGTGCAACAATTGAGATTTCGTGAGCGCGGACCATTAAAATCATGGCGTCCCGAAGCTATGGCAGAAGCCATTTTCAGTGTATTAAAGGAGGGTTTATCTTTGTCACAGGCCGCTAGAAAATTTGATATTCCATATCCGACATTTGTTTTGTATGCAAATCGTGTGCATAATATGTTGGGTCCTTCGTTAGATGGTGGTTCGGATCCCAGACCTAAGGCTAGAGGGAGACCGCAGCGTATATTGTTGGGCATGTGGCCAGAAGATTTAATACGTTCGGTTATAAAGGCGGTGGTGTTTAGGGATTATCGTGAAATAAAGGATGAAATGGGCGGTTTGCCGTTTGCCAATGGACAACCACATGTGGCCATATTTGGCTCTTCGCCTGGAGGTTCGGCTGGTGTTTCTAATGGTTTCCATAATGCTGCCAAATTGGCTGCACAAAGCTCTGGCATGGCTCAAGAGTCCACCAGTCCCCTTTCTACCATGACTGAAAACTTAAGGCGTCAAATAAtgtcacaacaacaacagtctCCCATATCACAATCGATGAACATGTATAAGTCGCCTTCGTATGTACAACGTTCCGAAATCGAAGAACAAATATCTGGTGTAAGTTCTAAACAACATGCTGATCGTCGTGGTTCAGAAAATTTACCAGATCTTAGTGCTTTGGGTCTTATGGGTTTACCTGGACTAAATGTTATACCCACTGGAGGTTCACGCAACACTCAAATGCACTCCAATACAGCAGCAGCATTTTCAAGAGAACGCGAACGTGAAAGAGATCGTGAACGAGAAAGAGAACGCGATAGGACTCGTGATAGAGAACGTGAAAGAGAACGAGAACGGGAGCGTGAAAGAGAACGGCAATATAGCAATCAATCACGCGGCTCAGCAGCGGGAGACTCACAAAAATCCACAGGCTCTGCTTCTCCCTATTCCcaaatgaaaatgaaagaaCATCCCAACTATGCCTACAACAAAAGATTTCTAGATAGTTTACCACCCGGCATAGATTTCGAGGCCATAGCTAATGGTTTACTACAGAAATCCACCAACAAAAGTCCGcgttttgaagattttttccAAGGTCAAGATATGAATGATCTAATGACAGGTCCCGAGTCAGCAAGTGCCGGTGCACATTTTCCACCGCAACGAGAAACAAATCTTATGAAAATCAAATTGGAACATCAACCCACAGAGTTGCAACATGAGGATTGA
- Protein Sequence
- MDLTKDIIDFTQKVDYSDNIKSSETKILSGEDFGIFSNMEKISKMAQEANALSSNEHNAEKFEAKMPTAQLQKPTTPQLIENTAHVSSIKPAMGRDISPPPRPLTSSEVVGFITTLDDPEMQLDPAVVLNKSRSLPASPNHLKTTHISDLFTFKPEKQREMPLKQTGFLSDKKLSNLIKPNAEALTRNNQQFCLRWNNYQTNLTNVFDELLQNESFVDVTLACEGQSIKAHKMILSACSPYFQALFYDNPCQHPIVIMRDVRWQELKALMEFMYKGEINVSQEQINPLLKVAEMLKIRGLAEVSPNGNGMAAQQLIPEQRMTVFDDEEDEEEVAAKNDDTEEDKVECSKAKRARIQISAKTTSALDLKLAEQRVRKRSRDGLLIDEERLRPRSLSRSPSPSPQNREKFAESTTPPPIVMTASTIVRNPFASPNPSNQPAATNASATSTSSSSSSSGSGSATSGSSVSSTPAAASYRARERSLSPSLMTAHPGTSSLSLASPNSSSTTPQISIHPHPAATAAAAAALANPHHPHHHAAAAAQQFAAQQQLHAAHSHAAMASALGASLAAAAAGAGSASAGPTSSAGSSSHHDDMEIKPEIAEMIREEERAKMIESGHPWMGGASTSSVTDSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSLDGGSDPRPKARGRPQRILLGMWPEDLIRSVIKAVVFRDYREIKDEMGGLPFANGQPHVAIFGSSPGGSAGVSNGFHNAAKLAAQSSGMAQESTSPLSTMTENLRRQIMSQQQQSPISQSMNMYKSPSYVQRSEIEEQISGVSSKQHADRRGSENLPDLSALGLMGLPGLNVIPTGGSRNTQMHSNTAAAFSRERERERDRERERERDRTRDRERERERERERERERQYSNQSRGSAAGDSQKSTGSASPYSQMKMKEHPNYAYNKRFLDSLPPGIDFEAIANGLLQKSTNKSPRFEDFFQGQDMNDLMTGPESASAGAHFPPQRETNLMKIKLEHQPTELQHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00921493; iTF_00331447; iTF_00331589;
- 90% Identity
- iTF_00921493;
- 80% Identity
- iTF_00921493;