Lcup004391.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lucilia cuprina
Gene Symbol
lov
Assembly
GCA_001187945.1
Location
JRES01000628.1:54424-78179[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3e-18 4.7e-15 54.7 0.0 1 44 835 878 835 879 0.96

Sequence Information

Coding Sequence
ATGTTAAAGGAATCAGAGGAAATCATTAAAAGGCGCAAACTGTCGTTAACGACAGATACTGCTGCTGcatatttggaaataaatcATAACTCAAACACTATCAACAACACCACCATTATACCACCTGGTACACCACCAACACCTTTAGCTAACAGCATCATGGCTTTGGAAACAGAATCGGCAGAAGCTTTAGCTTTAACCACCACCACCTCGGCCACAGCACCCATTTCTCTTAGCACACCAAATATGATCAATAATAGCAATTCGATGACTACAACTACAGCTTTTAATTCGCTCACCGCTGCCGCCGCCAACAGTATGGTCAATACATTATTGGCCAATAATGTTACCACTAGACCAGCTGCCTCTATACCTGATCACTATAGCCTAAGATGGAATAATCATCAGAATCATTTAATGCGTGCTTTTGATGCTTTACTGCAGAGCAAAACTTTAGTGGATGTTACGCTCGTTTGTGCTGAGACCAGCATAAGGGCCCATAAAATGGTTTTATCAGCCTGTTCACCCTTTTTCCAACGGGTTTTTGCCGATACTCCCTGCAAACATCCTGTAATAGTGCTCAAAGATTTTCGTGGCTGGGTTGTGCAAGCCATCATCGATTTTATGTATCGTGGTGAGATAAGTGTGCCTCAGGAGAAGCTTCATACCTTAATAGATGCTGGAGAGTCTTTGCAAGTACGTGGTTTGGTAGAAAGCTCAATACCCGAACATACTCCCACACCAGCTGCCTCACCAGATGATTTTGGCATGCTGGAAACCTCTTTATTATCTTCAGAATTAGAAAGATGTTCTAGTTTTGATGAAGAGTCCCCGTCGATGGTGACTTCAGGTTCCAAAATCATATTACCCTCACGTTTATTTGGTTCCTCATACAGACGTGAGAAGGAGCAACGCAAACGTGAAAGAGAACGTGATTTGGATTATGAATTGGAAAGTGATCAAGAAATGTTAAATGATTCTTTAAGTCACAACGATTTATGTACTTCCCCCATGCCACGGCGTAAACAGGCCAGACCCAGAAGAAGATCAGGAGAATTGACCCATGATATGATTAGCAAGCCCGCAACACCCACACCACAAGATCATAGCAACGAACAACCACAAGATTTATGCAACAAAGATTCtagtatttcagaaaataaatcaTTGACACCACAACCACCCACAGAGGCGCTCAGTGAAGATCCCTTAAAAACTGTGATTAAATCCGAATTAGCTGAACCGTTGGAAGATGATGAAGATCAAGTGGGTGGTCGTGACAGTGGCAATGATAGTCATGAACAACCTGAGGATCTAATTGTCAATGATAAGTCTTTGGATAATAATTCCAATTTTGATAATAACAATTCTCTGCCAGAGGTTTTAAACTCCACCGAAGAAATGGAGGAGGAAGATAGAGTAAACGAGGTTGAGCCTGAAGTAGAGGAGGATGAGGAGGAGGAAGAAGAGGATATTGAACAGTTAATACATCACACGAATGAGCTAAATAGAAGACGCAAATCTGCCTTGTCCATGAACTCTGATGGCCCAGAGGATTTGTGCACCACCAAAAAAGACAACGATACCAGTGGTCATCATTCGGCCTCCGATAATGAAGCAGAttgcagcaataacaacaatagcacaaaattaaataataataacaatcgTATAGTTTTATCCTTAAAGGATATAAGACAATTGAATAAACCCTCATCCTCTTCGACACCCAACTCCTCCCAAAATAGCATGAATCCTTTTTCTTCGGCCAGCCTTAGAGATTTAAGATTAGATCGCGAACGTGCTATGGAAACACAATGTAAAATGGAAGTTTTAGAGGCTCAAATGCAGGCCGCCGCAGAAGCTGCTGCCGCTGCGGCTGCCAGAGGAGAGAATCCCTTCCAGCACATGGAACATCAAATGGATTTGTCTTTAGCcgctgctgctgcagcagccGCTGTCTCACAACAACACTCGAGAGAAAGAGATCAGGCTTTGCAACGTGAACATCGAGAAATGCAGCAACATAATGCTTATGCCAATAGTATACTAGGACAAATGGGTATGCCAGGCATGCCTCCTTTTGGACCCAATCCAGGAGCTCCCTCTGGCCCGGGAGGACCTTCGGCCCATGAACGTTTAGAAGAATCTATGAATCGTTTAAGCAAAGAATTTACACCTACTTCACCCATGAGCCTACCACCACACTACAATCCTCAAGATGGGCCACCACATCCACCCTCACCTTTGCCCTTTCCCGGTATGTCTTCATTGGCGCTAACTCCGCCGCACAGTGAGTACTTAATGTTTGGGTTGGACTCACCCTTGGGCTTATTTCCACCTGGCATAGATCCCGGTAAACTTTATAATCCCTTAATGGAAATGTCTGATCCACGAGGTATGCCAGGTGATGCGCCGCCCTTTCTCAAAAAGAAAAGTAAGTACTtgccTAGACCTAAAGGTCAACATTCTGCACCACGAGGCGGTCCTCCACGTTCTTGGACAAATGCCGAATTAACCGAGGCCTTACAACATGTTTGGAATAAGAAAATGACCACTTCTCAGGCTTCACGCATCTTTGGTATACCCTACAACTCTTTGCTTATGTATGTGCGTGGCAAGTATGGCAAATCTTTGAAATTGGAACAATTACGCAAAGATTGCATAAGTGGTCCACCTTTGGAAATGCTACAAATGGGCATAAGCTCTGGTTCGGGCAAAAACTCGGGGGAGACTAAGGAGCAGAGAGAAGCCCGCAAAGAGGCTCAACGTAATGCTGCACAACATCCACCCGGTGATATGGAAATGGGAGGTCCTTTAACAGGTCCTGGACCACGACCCTCTAGCTCAGAACCAGATTTATTGGGTGGACCCAATGCCCTCTTTAATCCCTTTAATCCTCAAGGATTTTATCCCGATTTTCCGGGTGGTTTTCCCGGTTTACCCTTAAGCATGCTAAACTTATTGCCTCCCTCTGAAAGACAAcatgctgctgctgcagcagccGCCATGCATCATTCCATGGGTTTGGATGAGGACTGTAAATCTGACCGCTCGAAACAATCCTCCAATATGGATGATGAATACTCACTGAGTCGTGAAGAACGTCGTCATTCGGATTTAATGAATAACTCCTCATCTACACCCTCCTCTGCCTCGCAACAAAATGGTTCGTCACATGATAACAATGGTTATAAGGATCTACCACTACCACCATCTACAGCTGCTGTTCTTCATtctcatcatcataatcatttgTCGTCGGCAGATACAGATGATTCACAAAATCGTGAGGATAAAGAACATTTTAGATCTTCTCATTCGTTTAAGGAATTTAATCAAAATCTTTATATGACCCGCAAGAAATTGAGACGTTAtagaaagaaacatttaaaagttcAAGATCTACAAGGAACAGCCGCTGGAGGCTCTTCATCGGCCTCAAGTTTTGGTAAAAATTCCAtgaatatggaaaattttatggcTTTACAACCACCTTTGAATGTAACACCAGGAGCTGTTATAAGGACTTAA
Protein Sequence
MLKESEEIIKRRKLSLTTDTAAAYLEINHNSNTINNTTIIPPGTPPTPLANSIMALETESAEALALTTTTSATAPISLSTPNMINNSNSMTTTTAFNSLTAAAANSMVNTLLANNVTTRPAASIPDHYSLRWNNHQNHLMRAFDALLQSKTLVDVTLVCAETSIRAHKMVLSACSPFFQRVFADTPCKHPVIVLKDFRGWVVQAIIDFMYRGEISVPQEKLHTLIDAGESLQVRGLVESSIPEHTPTPAASPDDFGMLETSLLSSELERCSSFDEESPSMVTSGSKIILPSRLFGSSYRREKEQRKRERERDLDYELESDQEMLNDSLSHNDLCTSPMPRRKQARPRRRSGELTHDMISKPATPTPQDHSNEQPQDLCNKDSSISENKSLTPQPPTEALSEDPLKTVIKSELAEPLEDDEDQVGGRDSGNDSHEQPEDLIVNDKSLDNNSNFDNNNSLPEVLNSTEEMEEEDRVNEVEPEVEEDEEEEEEDIEQLIHHTNELNRRRKSALSMNSDGPEDLCTTKKDNDTSGHHSASDNEADCSNNNNSTKLNNNNNRIVLSLKDIRQLNKPSSSSTPNSSQNSMNPFSSASLRDLRLDRERAMETQCKMEVLEAQMQAAAEAAAAAAARGENPFQHMEHQMDLSLAAAAAAAAVSQQHSRERDQALQREHREMQQHNAYANSILGQMGMPGMPPFGPNPGAPSGPGGPSAHERLEESMNRLSKEFTPTSPMSLPPHYNPQDGPPHPPSPLPFPGMSSLALTPPHSEYLMFGLDSPLGLFPPGIDPGKLYNPLMEMSDPRGMPGDAPPFLKKKSKYLPRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPLEMLQMGISSGSGKNSGETKEQREARKEAQRNAAQHPPGDMEMGGPLTGPGPRPSSSEPDLLGGPNALFNPFNPQGFYPDFPGGFPGLPLSMLNLLPPSERQHAAAAAAAMHHSMGLDEDCKSDRSKQSSNMDDEYSLSREERRHSDLMNNSSSTPSSASQQNGSSHDNNGYKDLPLPPSTAAVLHSHHHNHLSSADTDDSQNREDKEHFRSSHSFKEFNQNLYMTRKKLRRYRKKHLKVQDLQGTAAGGSSSASSFGKNSMNMENFMALQPPLNVTPGAVIRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00922026;
90% Identity
iTF_00921506; iTF_00922026; iTF_00922211;
80% Identity
iTF_00921506;