Llun046936.1
Basic Information
- Insect
- Lordithon lunulatus
- Gene Symbol
- -
- Assembly
- GCA_963942505.1
- Location
- OZ012675.1:32872332-32880724[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.8 6.1e+02 2.6 0.0 2 23 272 294 271 294 0.88 2 17 1.8e-05 0.0029 19.4 0.3 1 23 347 370 347 370 0.97 3 17 0.03 4.8 9.3 0.3 1 23 408 430 408 430 0.98 4 17 0.0061 0.96 11.5 1.7 1 23 462 484 462 485 0.96 5 17 0.00058 0.092 14.7 4.6 1 23 488 511 488 511 0.96 6 17 0.031 4.8 9.2 2.6 2 23 518 540 517 540 0.95 7 17 0.0026 0.42 12.6 4.4 1 21 629 649 629 650 0.95 8 17 0.0057 0.9 11.5 1.4 2 23 662 684 661 684 0.91 9 17 2.3 3.6e+02 3.4 3.1 1 23 687 710 687 710 0.95 10 17 0.051 8.1 8.5 0.1 3 23 717 737 715 737 0.93 11 17 1.9 3.1e+02 3.6 0.2 1 23 741 764 741 764 0.94 12 17 0.52 83 5.4 0.4 2 23 771 793 770 793 0.94 13 17 0.068 11 8.1 0.7 2 23 802 824 801 824 0.95 14 17 0.037 5.9 9.0 0.1 2 23 830 852 829 852 0.92 15 17 5.9 9.4e+02 2.1 2.6 3 23 962 983 961 983 0.95 16 17 0.6 96 5.2 0.3 2 23 990 1012 989 1012 0.94 17 17 0.47 75 5.5 0.9 1 23 1025 1047 1025 1047 0.95
Sequence Information
- Coding Sequence
- ATGGAGCGGAAGGTCTGCAGGACGTGCGGCAAGTTCAGCGAGGACTTTGTGCACGTTTTCCGCACGGAGGGACTCAAGGGCAAGATCGAGACGTGTTTGCCCATTGTGGTGTCACCTCATTGCCTCCTGCCAGATACAATATGCTCCGAGTGCGATGCGAGCATCAACAACTTCTATGCCTTCATAAAAAACTGTCTGCAGAGCATCATCATCCTTGAAGCGCAGTTTGATGTGACGGAGTCATGTCTGAAGACGAAGAGGAAACGCGACGTGTCGACGTCGGCGCAAATGGCCATCACGCCGCCCCCAGTAGAGCGAGAAACGTTCGAGGACTATAAAGAGAAGATACTGAGTTTTGCCACGCAGCTGGCGGAGGCGGAGAAGACGCTGCGCAATGGGGACAGTTTCGAGCGGTGGCGGCCGCTGCCGCTGCAGCGAATTGTGGATTATGAGGATTCAAGTGATGACGCCGAGAGTAATTTTATTAACGAAATCTCTGAGAGGAAGTCGCGGAAAAGGAAGGCGCAGTTGATTATAAGTAGCCGGCCTAAGATATTTAAACCTGATACTAATAGGAGGAAACGGAGGCCTCCAGTACGGCGAGGGTTTGAGCTACAAAAGcagcaacagcaacaacaacaagagGCGCCAGGTTGGAATTTTAATACACTTGAGAGGATTTACGATGAAATGGTTGTTGTTAATAAGAGTGTTGTTGAGGATGTTGCTGTTGAAGAGGAGGATGAGGAGACAAAGGAAGATGTTGTGGCGGAAAATATTATTGACCTTCCGATCAACAAAGCTGCCCCTCAAGTATGTTTATTATGCGACATGCAGCTAACAGGACCAGGGCAGCTGGCAACACATGTGTTTGAAACGCATGGGATTGATATGGCGCAGGTGATGTCTAATGATCCTGTTCCGGAGAAACGCAAAAAGTTGCCCAATTTGGTCAAAATTACTGATTTGAAGCAGAAACGTGATTCTCAAGaaAAGTATGTTGAAAATGGTGAGGAGCCCCCGACGCTAGAACCGAACTACGTGTGCCCCTTGTGTCCTGCAATGTTTACCAATAAAACTGATCTCTTCGTGCATTTGCGGCAGAAACACCCGAACAAATCGCATTTGATATGCGGGCTGTGCTTATTCATGGCGACTTCTTATTTGAATCTCACTGATCACCTAGAGATTTGCAGCGAGAAACACACGATAACCCACCCGTATGTATGTAAAGTCTGTAAGTATAGTGAGGACAATCAAAAATCACTAGAAAACCATGTGCTAGTCCACGACTTTATAATAAACTTCTGCAAGAAGGAGTCGAAAATATTTGATCCGGCTGACTATGTTGAACTGAACGAGTCGTGCGATCCCCCCAAAACATACACATGCAATGAATGCGGAAATGTCTACGATGGTTTCAAAGAGTTTTCCGCTCATCGCCGTTCTCACCACTCGATATTTCATTGCGATCTTTGTAATAAATTCTATGGCCGTAACTCGCATCTCTGGAAACATGTGAATCGTCTTCATAAAGGCCACCCGTCCATTACGTGTCAGTTTTGTTATAAAACTAGCGCATCCAAATACCATTTGGCGCAGCATTTCAATAAAATCCACACTGTTAAATCATCCAAGCCGAAAAACGGGGATGTTTCAGAGGAGGATTTTATGACGAAAAAATTCGATCCATTCGACTTCCAGAGCGTACGACAGAGTTTTATGAGGCAAGAACTAGCTGGCAACAAAAAAGAACCTCCAGCCCCAACAGATGATGATTGTGCCAGCATCGAGGGATCACCCCCAAAAGAAATTGATACGAGTAGCAACTTGTACACCAACATAATCACCAATTACACCCCTCCACCACCTAGTAATGGTGAATTCAAGTGCCCCAAATGCTCGAAAGGTTTCCACAAAAAGACGCTATTAAAAAAACACAAGAAAAACTGTCGGCCACGCCTCCAAAAAGACTTGCTGACGCGCTGCAAATCATGCTCGCGCATCTTCAAAGACCGCCAGAGCCTCGCCAAGCATCTCGTCAACTACCACAGCGAGTACTCGTGTGAGTTGTGCCATGAGAAAGTCCAGAGCAAATGCGAGATTGTCTCGCACATCCGATTCAGCCATCCCGCGTGCCATTTGTTCTGCGGAGAGTGCGAGAATGTGCTGCGGAACCAAGACGACCTGCGCGCGCATACCGCCGACCATAGCGGGACATTTGTCTGCCAGTTCTGCGGTGATTTGCTGCCCAGTaaaatcaaactgaaaatgCATATATTGTCACTGCATAGAAAGATTTTAAGTCTCTCCTGTGGGATCTGTTTGAAGCTGTTTGAAACGCAGCATATTTTACGGGATCATGTCCGACTGGTGCACCGGGATGTGTTGACGCCGCGTACATCATGTACGGTTTGTGGGAAGAATTATGGGTCCAAATGGAAGACGTATGATCATATTAATAAGTCGCATGGGAGGATTTTCAAAACTTGTAAGACTTGTTTGGAGGTGTTTGACACTGATGGGGAGCTGGAGAGGCATTACGAGGCTGCACATGGAAATGGGCCCAAGGAAAAGGTGTTTGTTAAGAAAgagGTTATTACCAAGAAGGAGGTGTACGAGAGCGAACCGGAGAACGACTACAAAAACTCCTCATCCGCAGAGGAGAGTTCATATGAAACCGAGGAGCCTTCAAAGATGTCACTGCTCGAACAACGCTTAACCGAGCCCGAACCGGAGCAGCCCGTAGTCACCCTAAACGCCACCAAAAAGAAGCGATTCCTGAAAAAGTCGGTAAAATCTGAATGTGAGTACACCCCCGACCAAAACGGCGCCAACAGCTCGAAACGAACAGTCTACGTGAACTCAAACGACCCCTCGCTGTGCGAAATCTGTTTCAAAACGTGGCCCGCGAAAAAACACCTCTGGCAGCACTACATCCGTTGCCACAAAGCTGCAGCCGCAACCGTTTGCGGTATCTGTTTGAAAACCAACGAAAGCTATGAGTTGCTACAGAAACACCTGCAGAGCAACCATCCCAATTTGCTGCATGGCTGCGGGTTCGGGTCCAACTTTATTTGTAGGATCTGCGGGCGCTACCACAACGCCAGTTCGAAGTTGCGGCTGCACATGGTGATACACGAGAATTTCGATTGGGATCTGCTCGGCGGGATGACCAGCGTGAAATCGGAGGCTGTGCAGGATGTAGCTATTAATTACGAGAGTATGATTGAACAGGTTGAGTGCAGCTCGGAGAACGAATCGAGCAGTTCGAGTGAGAGCGATGATGAGACTGAGGCCTCTGAGGTGCCGATTAAGGAAGAGGAGGAGTTTTCTGAGGAGTCGAGCACGTCGCAGAGTGTTGTTGTTAAAAGCGAGAATTGCACATCGGATGAGGAGGAGGATGATGAGGATGAGGACGATGATGAGGATGATGATGTTTCGTTGTCTAATAATTCCGAGAACACTTCAGAGAATGTGATTAAAGGGATGAATGTTTACAGGCATCCTGATGTTGTGGATTCTGCTGTTAAGAGTATTTGCTATGAGGTGGGCGAGTGTGACGGGGAGTATAGTAGTCAGGACTATGGGGAGGTGCAGTCACACTCGTTGAATCCTCATGAACTACAAAGCGCCGTTGATAGTATACTGTGA
- Protein Sequence
- MERKVCRTCGKFSEDFVHVFRTEGLKGKIETCLPIVVSPHCLLPDTICSECDASINNFYAFIKNCLQSIIILEAQFDVTESCLKTKRKRDVSTSAQMAITPPPVERETFEDYKEKILSFATQLAEAEKTLRNGDSFERWRPLPLQRIVDYEDSSDDAESNFINEISERKSRKRKAQLIISSRPKIFKPDTNRRKRRPPVRRGFELQKQQQQQQQEAPGWNFNTLERIYDEMVVVNKSVVEDVAVEEEDEETKEDVVAENIIDLPINKAAPQVCLLCDMQLTGPGQLATHVFETHGIDMAQVMSNDPVPEKRKKLPNLVKITDLKQKRDSQEKYVENGEEPPTLEPNYVCPLCPAMFTNKTDLFVHLRQKHPNKSHLICGLCLFMATSYLNLTDHLEICSEKHTITHPYVCKVCKYSEDNQKSLENHVLVHDFIINFCKKESKIFDPADYVELNESCDPPKTYTCNECGNVYDGFKEFSAHRRSHHSIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQFCYKTSASKYHLAQHFNKIHTVKSSKPKNGDVSEEDFMTKKFDPFDFQSVRQSFMRQELAGNKKEPPAPTDDDCASIEGSPPKEIDTSSNLYTNIITNYTPPPPSNGEFKCPKCSKGFHKKTLLKKHKKNCRPRLQKDLLTRCKSCSRIFKDRQSLAKHLVNYHSEYSCELCHEKVQSKCEIVSHIRFSHPACHLFCGECENVLRNQDDLRAHTADHSGTFVCQFCGDLLPSKIKLKMHILSLHRKILSLSCGICLKLFETQHILRDHVRLVHRDVLTPRTSCTVCGKNYGSKWKTYDHINKSHGRIFKTCKTCLEVFDTDGELERHYEAAHGNGPKEKVFVKKEVITKKEVYESEPENDYKNSSSAEESSYETEEPSKMSLLEQRLTEPEPEQPVVTLNATKKKRFLKKSVKSECEYTPDQNGANSSKRTVYVNSNDPSLCEICFKTWPAKKHLWQHYIRCHKAAAATVCGICLKTNESYELLQKHLQSNHPNLLHGCGFGSNFICRICGRYHNASSKLRLHMVIHENFDWDLLGGMTSVKSEAVQDVAINYESMIEQVECSSENESSSSSESDDETEASEVPIKEEEEFSEESSTSQSVVVKSENCTSDEEEDDEDEDDDEDDDVSLSNNSENTSENVIKGMNVYRHPDVVDSAVKSICYEVGECDGEYSSQDYGEVQSHSLNPHELQSAVDSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00920950;
- 90% Identity
- iTF_00920950;
- 80% Identity
- -