Basic Information

Insect: Lordithon lunulatus
Gene Symbol: L
Assembly: GCA_963942505.1
Location: OZ012674.1:19893575-19897092[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.7e-06 0.00026 22.7 0.3 1 23 47 69 47 69 0.99

2 11 0.084 13 7.9 6.0 1 23 75 97 75 97 0.97

3 11 3e-06 0.00048 21.9 3.9 1 23 103 125 103 125 0.99

4 11 0.00055 0.087 14.7 1.2 1 23 131 153 131 153 0.97

5 11 0.00023 0.036 15.9 0.4 1 23 179 202 179 202 0.97

6 11 0.014 2.3 10.3 0.2 3 23 233 254 231 254 0.92

7 11 0.0031 0.5 12.4 0.0 1 23 282 305 282 305 0.93

8 11 7.3e-05 0.012 17.5 0.2 2 23 424 445 424 445 0.95

9 11 0.063 10 8.3 2.1 3 23 455 476 454 476 0.90

10 11 0.012 1.9 10.5 0.5 1 23 481 504 481 504 0.90

11 11 0.00017 0.028 16.3 1.9 1 23 571 594 571 595 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.7e-06	0.00026	22.7	0.3	1	23	47	69	47	69	0.99
2	11	0.084	13	7.9	6.0	1	23	75	97	75	97	0.97
3	11	3e-06	0.00048	21.9	3.9	1	23	103	125	103	125	0.99
4	11	0.00055	0.087	14.7	1.2	1	23	131	153	131	153	0.97
5	11	0.00023	0.036	15.9	0.4	1	23	179	202	179	202	0.97
6	11	0.014	2.3	10.3	0.2	3	23	233	254	231	254	0.92
7	11	0.0031	0.5	12.4	0.0	1	23	282	305	282	305	0.93
8	11	7.3e-05	0.012	17.5	0.2	2	23	424	445	424	445	0.95
9	11	0.063	10	8.3	2.1	3	23	455	476	454	476	0.90
10	11	0.012	1.9	10.5	0.5	1	23	481	504	481	504	0.90
11	11	0.00017	0.028	16.3	1.9	1	23	571	594	571	595	0.97

Sequence Information

Coding Sequence: ATGTTTGTTAAAGGGCAAGGAAGCTCGCCGTCGAGTAGCTCCGAGCAAGCGTCTCCGGCAAGTTCTTGTCAAAGTTCCGTCAGTGATGGTGCAGATAACGAAGATGTGTTTACCTTGGGAGCAACAGCAACTACGCCTTATGAATGTAACATTTGTAAACGAGCGTTTGCTAGGTCTTCACTGCTAGGCAAGCACGTTCAGACGCACACGGAGCAGTTGCAATTTAGTTGCCCGTATTGTAGACGTCTCTTTAAACACAAGCGGTCGAGGGACAGGCATACTAAACTTCACACAGGTGATAAAAAGTACAAGTGTCTTCATTGCGATTCGGCGTTTGCTAGAAGCgatcatttaaaaattcacatgAAGACGCATGATAACAAGAAACCACACCAGTGCGAGCTTTGTAATAGGGGGTACAATACCGCTGCCGCCCTGGCGTCCCACCAGCAGCATCACTCCAAGCAGGAGCAACGGCGCTGTGGTAGCAGTGCCAGCAGGAGCAGCGCCGTTAGCACCCCTAGTCCTTGTAATTATCGATGCTTGCAATGTCCAGAAATATTTGAAAAGGCAGAACATTTACAAAGTCATTTATTGGTGCAGCACAAGCATGCGTCCGCACCAGCCTCCCAACCGAATCTCGTATTAGTGGACCCAACATTCAACTTAGCCACAATTGACCTACCAAAGATAGCCTGCATGTACTGTGGTAAAGATTTTTATAGTATGAACCAAATGTATCAACATATAAGTGAGGATCACGGTGCGATTTTCGGCGATTTACCGTCGCCGAGCACTGAAAATATGTCACCTAGACACGGTCGTCAGAATAACTCACCAACCTATGCCTGTGATAAGTGTACAATGCGATTTGATTCGCCAATTTTGTTGCAAGAACATTTGGAGGCGGCGCATTGGGGTCATCCAGGGATGTATTTTAATGCGGTACCGAATGCAACTGTGCCGCTGGACAGGCCCAACGCCAATGCGTCGCAATCAAAGCCGACGGATCTCAGTCGCAAACGGCGTCCAGATTGCAACTCAGATCGTAAGATTGAAAAACGAAAAGCAGACAGCTCGTTGCTTCTGAAAACGCCTCCTTTGCCACCTGGCCCCTACGAAGACAAACCCTGTATTTGTTCCTATTGCTATGCGCAAATGCctaatttcaaaatgttcctGCTTCACATGGAGTCGCACGTGGCAATGAATGCGGCAGTCCCCGTGCAGCCTCTTCCACCACTAGTGACTGGTAATAACCCAATCGGTAGTTGTCCTCTTTGTGGTGAATCTGTTCGGTCTCCTACAGAATTAACACGCCATATACACGGGCATGCTATCTCCCATGTCGCCGGGCGTTGCTGTCATCCCTGCAAGAAGCCATTCGACCAAGTCGATCTCCTGCAAAAGCACCTAATTGACATGCATTCCCGCACCATTTTCAAATGCACCCTCTGCAACGAGCTGTTCGATACGCAGATCGCGCTCCAAATGCATTTTTCCGCTAAACACACGCCGGAGTGCAAACATTACAGATGCAACCTGTGCCCGGATCAAATTTTCCACGACCGGCTTACCGCGGAAATCCACGTAAATATGAAGCACGCCGTTCAAGTACCACTCACGGCGACAACCGCCGCCCGGAACTACATGCCCAGGTTCGCGGAGGCCGAACCGCCACCGCCGCAGCCACGGCCTGACTTTCCTCTCTACCAGTGTCCCTTGTGCCAAAAAACCTTTAAAGATGAGTATCTACAATACATTCACATAATGAAGGAACATCATGAGACACGTGAGgtaatttaa
Protein Sequence: MFVKGQGSSPSSSSEQASPASSCQSSVSDGADNEDVFTLGATATTPYECNICKRAFARSSLLGKHVQTHTEQLQFSCPYCRRLFKHKRSRDRHTKLHTGDKKYKCLHCDSAFARSDHLKIHMKTHDNKKPHQCELCNRGYNTAAALASHQQHHSKQEQRRCGSSASRSSAVSTPSPCNYRCLQCPEIFEKAEHLQSHLLVQHKHASAPASQPNLVLVDPTFNLATIDLPKIACMYCGKDFYSMNQMYQHISEDHGAIFGDLPSPSTENMSPRHGRQNNSPTYACDKCTMRFDSPILLQEHLEAAHWGHPGMYFNAVPNATVPLDRPNANASQSKPTDLSRKRRPDCNSDRKIEKRKADSSLLLKTPPLPPGPYEDKPCICSYCYAQMPNFKMFLLHMESHVAMNAAVPVQPLPPLVTGNNPIGSCPLCGESVRSPTELTRHIHGHAISHVAGRCCHPCKKPFDQVDLLQKHLIDMHSRTIFKCTLCNELFDTQIALQMHFSAKHTPECKHYRCNLCPDQIFHDRLTAEIHVNMKHAVQVPLTATTAARNYMPRFAEAEPPPPQPRPDFPLYQCPLCQKTFKDEYLQYIHIMKEHHETREVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -