Basic Information

Insect: Lordithon lunulatus
Gene Symbol: -
Assembly: GCA_963942505.1
Location: OZ012675.1:4659270-4670130[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.8 6.1e+02 2.6 0.3 1 23 104 127 104 127 0.88

2 18 0.37 59 5.8 0.2 3 23 132 153 130 153 0.92

3 18 0.0016 0.26 13.3 2.6 3 23 317 338 310 338 0.89

4 18 0.15 23 7.1 1.0 1 23 341 364 341 365 0.93

5 18 4.6 7.3e+02 2.4 0.6 2 23 490 512 489 512 0.87

6 18 6.2 9.8e+02 2.0 0.5 1 9 550 558 550 572 0.75

7 18 0.18 28 6.8 0.5 1 19 618 636 618 636 0.97

8 18 0.013 2.1 10.4 0.6 1 23 653 676 653 676 0.95

9 18 0.5 80 5.4 3.3 1 23 682 707 682 707 0.91

10 18 0.00011 0.017 17.0 1.5 1 23 716 739 716 739 0.96

11 18 0.29 46 6.2 4.9 1 23 743 766 743 766 0.97

12 18 0.00039 0.062 15.2 1.9 1 23 772 794 772 794 0.98

13 18 5.1e-06 0.00082 21.1 1.0 2 23 800 821 799 821 0.97

14 18 1.3e-08 2e-06 29.3 3.6 1 23 826 848 826 848 0.98

15 18 0.00014 0.023 16.6 2.3 1 23 854 876 854 876 0.96

16 18 3.3e-05 0.0053 18.6 4.5 2 23 883 904 882 904 0.96

17 18 1.4e-06 0.00022 22.9 2.5 1 23 910 932 910 932 0.97

18 18 0.00029 0.047 15.6 0.3 5 23 942 961 941 961 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.8	6.1e+02	2.6	0.3	1	23	104	127	104	127	0.88
2	18	0.37	59	5.8	0.2	3	23	132	153	130	153	0.92
3	18	0.0016	0.26	13.3	2.6	3	23	317	338	310	338	0.89
4	18	0.15	23	7.1	1.0	1	23	341	364	341	365	0.93
5	18	4.6	7.3e+02	2.4	0.6	2	23	490	512	489	512	0.87
6	18	6.2	9.8e+02	2.0	0.5	1	9	550	558	550	572	0.75
7	18	0.18	28	6.8	0.5	1	19	618	636	618	636	0.97
8	18	0.013	2.1	10.4	0.6	1	23	653	676	653	676	0.95
9	18	0.5	80	5.4	3.3	1	23	682	707	682	707	0.91
10	18	0.00011	0.017	17.0	1.5	1	23	716	739	716	739	0.96
11	18	0.29	46	6.2	4.9	1	23	743	766	743	766	0.97
12	18	0.00039	0.062	15.2	1.9	1	23	772	794	772	794	0.98
13	18	5.1e-06	0.00082	21.1	1.0	2	23	800	821	799	821	0.97
14	18	1.3e-08	2e-06	29.3	3.6	1	23	826	848	826	848	0.98
15	18	0.00014	0.023	16.6	2.3	1	23	854	876	854	876	0.96
16	18	3.3e-05	0.0053	18.6	4.5	2	23	883	904	882	904	0.96
17	18	1.4e-06	0.00022	22.9	2.5	1	23	910	932	910	932	0.97
18	18	0.00029	0.047	15.6	0.3	5	23	942	961	941	961	0.96

Sequence Information

Coding Sequence: ATGGAAGATTCGGTCATGGATGAAGCCATGGACAAAGATATAGAAGAAGACATGGAGTTATCAGACTCAGACATACCATTAGGAACTATACAAAAAATGAGAACATCGATTAGCTCGAAAATCCAGCCCAATAAACGTCCGGCACGTGACAAACCATCCCCGCAACCCCCAAAACTGGCATTCACTGTACCCAAACAAGAACACCCCAGTTTAACAGAAATGACCCTAATCCACCCATCGCAAGGCCTTCTAAAGGACGCCATCTTAGTAGGAAATAAACTAAACATAAGCACCACCATCGGCCCAAACTATGCGTGCAATATTTGCAACGACAACTTCTTCTCGGGGCTAAAACTCAAACTGCACTACCTTCTAGTGCATAACGTGGATCATTGCAAAATCTGTGATCTCCTCGTAGAGTCATCAGATGATTTAGCTCAACACGAAACGAGAGTGCATGAAGGTAAAGGCTGTGAGCTTTGCCAGGAGCAATTCGATGAGGACAGATTGGTGCATTACAAGGGAAAACACGATGCGGTGATTTGCCAGTATTGTAGCGTAATAGTGCAGCCGAGTGGGTTGTACAAAAAGCATCTGACTGAAAAACATATGGCGAAGGAGGGGTTTGTAGACCTGCAAACGCCTGATGCGATATTGGAGTTGCAGGGGAAAGGTGGCACCTATTTTTGTAACTTGTGCGAGAAGAGGCGCAGCAAGGAGATTTTCGGGCATTTCATCTACCACCACAAactgaatttatattatttagcgAAGATTTTCCCTGGATTGTCTGTTGATATGAATTTCGGGAATATTAATGAAGCTCTAGAGCTTAAAGGGCAAATGGAGCCGGATGAAAGTCATAGATGGTGCAGTGTATGTTTTGGAACGCACTCAAAGTACGCCTCAAAATCCCTCCACAAAGTCTACTGCGAGTCCTACGTGTATTGCATCCACTGCAAAAAAACCTTCGCATCAACATCCGACCTAGAAAAGCACATAGATCGTAAACACCCAACATTCCCATGCGAGTTGAACTGTGAGACATCATTCGCAACTCTATTGACACTCGAAATGCACCACGCCGACCACCACAAGCTCACCAAATGCACCTACTGTGATACATTCGTAGAAAACGAGGAGACACACACGACAGAATTCCATAAAGTTGAATTCCTTAATTGGGGCCCACGGTtgctgaaagaagaagactcAAAAACCCTATGCAGCCTATGCAATATGGAACTGAAAAACAACCAAAACACCCCCAATAAAATCGTATCGCACTACCGATGCGTCCACAAAATGACCCTGCACCGCATCATTCAATCAATCGGTGTCCTACCGAGTGAAACCAAACAGGGCGACATTAAACCAAGCGACGATGACTACTCAACAGATTTCCACTCGAAATATGTAAAGTGCTGTTTCGAATACAGACAAATTAAAGACCTAAACAGCCCAATTAAGTGCGACTACTGCCAGGCTGACACGAACTCACACTTGCGTTTACTTGCGCACATGTTTGACGACCACCACTTTTCGATGCCCGACTCGCTGTTGGACTGCGACATGTGCAACCGCGCGGACAAACGCTATAAACTATTGAACCACCTGGAGCACTACACCGAGAGTGATTTGAGGACGTACGAGTGCGATAAGTGTCACTATTCGATGTCTTTGGAGGACGCGAGGGAGCATATTTTGGATAAGCACGCCGACGAACTGGAGGGCTATAATATTGTGGACTGCGGGGCGAAATGCAGATTTTGCGAGGAGTATTTTTGGAGGGATGCGGTGCTGGAGCGGCATGAAGTGGCTGCACACTTGGAGGAGTTTAGACAGGAGTTTTTCGAGTGTAACAGCTGCAACAACACGTTTAATTCAATTaaaAGTCTCATTTCTCATGACACACAAGAGAAAACAACTGAGTGCCAGTCATACTCCGAACTGGTATTCCAGTGTCGCATTTGCGTCACAGTATTTCCGAACATTGAAACCCTCCGCGAACACTTCAAGCAGTACCACCAGAAACTCAGTGTTTACGTGTGTGGTTTCGAGGACTGCAAGAAGACTTACAGCACCAAAAAGCTGGGGCGCGCACATTTCCGACAGTGCCACAGCAAACGACCGGTCGTGATTAATTTTGATTGCGAAATTTGCGGCCAGAATTTCACCACCAAGAAATCGTTCCTGCTGCACACCAAGATGTCGCACTCGAAGGGCTTCAAGTGCGTTATTTGCGGCGATAAGTTTCAATCATCGGAGCACAGaaaacaCCATTACACCACAGTTCACGCGGGTGAACTAATGTACGAATGTTCAGAATGCCAACGAACCTTCCTCAGCAAATCCGCGCTACATCTGCACATGAATCTACACACTGATTTCACAGTGGAATGCAAATACTGCGGCAAGAAATTCTACagaCGTGACTCTTTCAAAGAGCACCTTTTGATCCACATCGGTCCCAAACACCAGTGCACCTACTGCCCGAAAGTATTCACCCAAAAATCGAATCTACGCAGACACATCCGACTGCACACCGGCGAAAAGCCCTACCAGTGCCCGCACTGCCCTAAAACGTTTAGTGATAAAGGCGCTTGCAACTCACATGTTAGCGTTCACACACGTTCGCACGAATGTTACTGCGATGTGTGCGGCAAGAAGTTCAGCAAGCCGCAGAAGCTGAAGTATCATATGAAGAAACACACGGGAGTTGGTTTATTCAAATGCGAAATCTGTGATCACTCGTTTGTGAGTCAGTACGACCTGCGCAAACACATGACGTTGCACACCAATGCGAGCACCCAAATCGTCTGCGAATGTGGCAAAGGTTTCAGTTCGGAAAAGTACTTGCGGTCGCACATTAGAATCGTGCACGAGACGAAAAAAACGAAACACGATATTAAACGTTTGAAAGGTCTCTCGAATGGCTTCCAAGTAAGagattttatgtaa
Protein Sequence: MEDSVMDEAMDKDIEEDMELSDSDIPLGTIQKMRTSISSKIQPNKRPARDKPSPQPPKLAFTVPKQEHPSLTEMTLIHPSQGLLKDAILVGNKLNISTTIGPNYACNICNDNFFSGLKLKLHYLLVHNVDHCKICDLLVESSDDLAQHETRVHEGKGCELCQEQFDEDRLVHYKGKHDAVICQYCSVIVQPSGLYKKHLTEKHMAKEGFVDLQTPDAILELQGKGGTYFCNLCEKRRSKEIFGHFIYHHKLNLYYLAKIFPGLSVDMNFGNINEALELKGQMEPDESHRWCSVCFGTHSKYASKSLHKVYCESYVYCIHCKKTFASTSDLEKHIDRKHPTFPCELNCETSFATLLTLEMHHADHHKLTKCTYCDTFVENEETHTTEFHKVEFLNWGPRLLKEEDSKTLCSLCNMELKNNQNTPNKIVSHYRCVHKMTLHRIIQSIGVLPSETKQGDIKPSDDDYSTDFHSKYVKCCFEYRQIKDLNSPIKCDYCQADTNSHLRLLAHMFDDHHFSMPDSLLDCDMCNRADKRYKLLNHLEHYTESDLRTYECDKCHYSMSLEDAREHILDKHADELEGYNIVDCGAKCRFCEEYFWRDAVLERHEVAAHLEEFRQEFFECNSCNNTFNSIKSLISHDTQEKTTECQSYSELVFQCRICVTVFPNIETLREHFKQYHQKLSVYVCGFEDCKKTYSTKKLGRAHFRQCHSKRPVVINFDCEICGQNFTTKKSFLLHTKMSHSKGFKCVICGDKFQSSEHRKHHYTTVHAGELMYECSECQRTFLSKSALHLHMNLHTDFTVECKYCGKKFYRRDSFKEHLLIHIGPKHQCTYCPKVFTQKSNLRRHIRLHTGEKPYQCPHCPKTFSDKGACNSHVSVHTRSHECYCDVCGKKFSKPQKLKYHMKKHTGVGLFKCEICDHSFVSQYDLRKHMTLHTNASTQIVCECGKGFSSEKYLRSHIRIVHETKKTKHDIKRLKGLSNGFQVRDFM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -