Llun006303.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordithon lunulatus
Gene Symbol
-
Assembly
GCA_963942505.1
Location
OZ012667.1:14980602-14988209[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0053 0.84 11.6 3.9 1 23 295 317 295 317 0.97
2 11 2 3.2e+02 3.5 0.1 1 23 322 346 322 346 0.91
3 11 0.00038 0.061 15.2 0.8 1 23 429 452 429 452 0.93
4 11 2.7e-05 0.0042 18.9 4.9 1 23 457 479 457 479 0.98
5 11 0.021 3.4 9.7 3.8 1 23 485 507 485 507 0.90
6 11 1.2e-05 0.002 19.9 2.3 1 23 513 535 513 535 0.98
7 11 4.2e-06 0.00067 21.4 0.4 1 23 541 563 541 563 0.99
8 11 9e-06 0.0014 20.4 4.4 1 23 569 591 569 591 0.98
9 11 2.8 4.5e+02 3.1 6.9 2 23 598 619 597 619 0.95
10 11 0.00035 0.056 15.3 0.5 1 23 625 647 625 647 0.98
11 11 4.7e-08 7.4e-06 27.5 1.5 1 23 653 675 653 675 0.99

Sequence Information

Coding Sequence
ATGGACGCCACCGTTTTGCTATGCGATTCTACAATTTGTCGCCTCTGTGCCGAGGAGAACGAGAACGGGACGTTCCTATTCCCTGTAGACGAAAGCACGGAGAATTTAAGCAAGCTCGTCAACAAGTATCTGCCGCTGAAAgtaGAAGAGGATGGAAAATACCCCTGTACTTTATGCCCAGGCTGCACCATCCAAATTGAAGCAACAAAAATATTCTTCGATCTCATCATTGATGGACAAATTAAATTACGAGAGCTGCTAACAGCTCAACAAGGCGTGTTGCGAAGACAAGAGAAGCAAAAAGAACAATTAGAAAATGCCCTTAAAATTGTCAACCCTAATTCTTCCCTACAGACATACACTGTGCAGACTGATGAGGATggagagaaaatatttatacaaaTTTTATCAGAGGGCCCATTATTTCCTCCTGATCATGAAATGTCCTTACGCTCAGATGGTTTGGATAAGCCTAAGAGGAAACGGGGCAGGCCCCCCAAGGCCTCACAAGTGGCTGAAGCAACACAGGTGCAAAATGTGGAAGTTTTTAAAGAACAGGAAATTGTTGAGTATGATGCAGATGGGAGGAGgaaaagaaaaattaagaaaCCTCTACGTTATTCAGAACTTCTACAGGGAAAGGAACTAGATCGTGTTTTTAAGGAAGAAGGTGTTTTTGATGATGAAGAAGAACTGTCTGATACTGTTCATCTCACAAAACGTATGAAACCTGTAGAAGTAGTAGATACCAATGATTGTGATGAGATAATAGGGCACATGCAGGGAGAAAATGGGGAAGAACTGGGGCAGttggttattaataaaaacggaaacaaagtaagaacaaaacataaaattgaAACAGAACTGCCCAAACAACAGTTTCAATGTGAATATTGTGAGAGGATATTCTTTCATAAAAGTCGTTTGGATTTGCACATGTCTTTTCATAAGGATATTAAGTATGAATGTGGGAACTGTGCAATAAGAGTTGATACAAAAACTGCACTGGATGGCCACCAGAAGAGTACTGGACATGCTGGAGctaaattaattgaatgttTGGAGAATTATggACAAATTGAGATAATTAAAAAAGCAAAGGAAAATGTACCGAATAGTATTATACCAAATGCATTTACCCAGCAAACTGAAACCAACATAGATACATTAGCCTCCTGTGAAGAAATAGAACAGTTTATAAACCCAGATTTAGGAAAGGATAAAACCGTTACAAAAAAGCCTGACAAAGTAGCAACCAACACTAAAAACGGTGAAAGAAACTACTCATGTGAGTCATGTAGCAAAGTGTTTAATCACCCTAGTAGTCTGGTGTACCATAGAGAAGCCGAACATAACACCAGGAAATTTGTGTGCGTTAAGTGTAAGAAAACATTCAAGCACAAACAACTGCTGCTACGACACCAAAAGGTGCACACAAATGAGCGGCCGCACATTTGCAAGTGTTGCGGTTCTACGTTTAAAACCAAAGCGAATTTGCTGAACCACATGCCCACGCATACCGGCGAGAAAAAATATTACTGCACCCAATGTGGGCAGACGTTTGCGCATAAAACTTCGTTGACGCTTCATGTTAGATGGCACAATGGGCAAAAACCTTATGAATGTGATATTTGTATGAAGACTTTCTCGCAGAAGGGGAATCTAGCTGAACATAGAAGAATTCATACTGgagAAAAACCATACTCTTGCACATACTGCAGTCGCAGATTTACAACCTCATCTCAATATAAATTACACATTAAAAGGCATACTGGAGAACGTCCATGGAGGTGTGAATATTGTTCGAAAACATTCCTACATAAGGACACTTGGAAATGTCATACGAGACGGCATAGAAATGAACGGCCTTATCAATGCCAAATGTGCCTACGAGGATTTACTGAGCAATGGGCATTGAGAAAACACGAACGGCTGCATACCGGTGAAAAACCAtacgtttgtaatatttgtaGTAAATCGTTTGCTGATTCTTCAAATCTAACGAAACATAAAAAGACTCATTTAAGTAGGAGGCATAATAATCATTTGAAGATGGAAGACAATCTTAATGATTTAAGCAATATGGATATGGCTACTACAGATCAACCACCAGGTTCAAACCAAATAGTTTATTTAACGTATCAAGATGGAAGTTTAAATGAAGACCAATCACAGACATTAGTGCACATTGTTGATGCAAATGAGCAACCCAATAATAAAATAGCTAATGATATTTTTACTGATCCGGATATGCTGACAGGTGAAGAAATTGAAATGGATGTTCAATTGCAGcAAATAGTGGATAGTGACGGGAATGCTATCAGTTTTACTACAGCTGATGGACAACAAATGAAAGTTGTATCGACCACAGGAGATGATCATGCAATTCAGGGATTAATGCCTGATGGAACTTTGGTGCCTATTAATCTAACTATGCAAGATGGTAAACCTGTTGCTGCTGAAATGATcacaagaaataatataaatgctTTTAAGAAAAATGGGGGTACTCAAAGTCCACCGGCGGAATTACTGTCGCCAAATATTCAACTGCTGGTGGAAGGCGAGGAAGAAGAATCAATAGAAGATAGTAAACTGCAGTTCATAAACACAAACGCAAATCCCAAAATGCAGTTCTTGACTCAAGATGGGCAAAACATGTGTCTCATCACGACTTTTATGGATAACAATACCTTTAATTCAAATAGTCAGTATCTTAATAtgccataa
Protein Sequence
MDATVLLCDSTICRLCAEENENGTFLFPVDESTENLSKLVNKYLPLKVEEDGKYPCTLCPGCTIQIEATKIFFDLIIDGQIKLRELLTAQQGVLRRQEKQKEQLENALKIVNPNSSLQTYTVQTDEDGEKIFIQILSEGPLFPPDHEMSLRSDGLDKPKRKRGRPPKASQVAEATQVQNVEVFKEQEIVEYDADGRRKRKIKKPLRYSELLQGKELDRVFKEEGVFDDEEELSDTVHLTKRMKPVEVVDTNDCDEIIGHMQGENGEELGQLVINKNGNKVRTKHKIETELPKQQFQCEYCERIFFHKSRLDLHMSFHKDIKYECGNCAIRVDTKTALDGHQKSTGHAGAKLIECLENYGQIEIIKKAKENVPNSIIPNAFTQQTETNIDTLASCEEIEQFINPDLGKDKTVTKKPDKVATNTKNGERNYSCESCSKVFNHPSSLVYHREAEHNTRKFVCVKCKKTFKHKQLLLRHQKVHTNERPHICKCCGSTFKTKANLLNHMPTHTGEKKYYCTQCGQTFAHKTSLTLHVRWHNGQKPYECDICMKTFSQKGNLAEHRRIHTGEKPYSCTYCSRRFTTSSQYKLHIKRHTGERPWRCEYCSKTFLHKDTWKCHTRRHRNERPYQCQMCLRGFTEQWALRKHERLHTGEKPYVCNICSKSFADSSNLTKHKKTHLSRRHNNHLKMEDNLNDLSNMDMATTDQPPGSNQIVYLTYQDGSLNEDQSQTLVHIVDANEQPNNKIANDIFTDPDMLTGEEIEMDVQLQQIVDSDGNAISFTTADGQQMKVVSTTGDDHAIQGLMPDGTLVPINLTMQDGKPVAAEMITRNNINAFKKNGGTQSPPAELLSPNIQLLVEGEEEESIEDSKLQFINTNANPKMQFLTQDGQNMCLITTFMDNNTFNSNSQYLNMP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-