Basic Information

Insect: Lordithon lunulatus
Gene Symbol: -
Assembly: GCA_963942505.1
Location: OZ012675.1:43514830-43516620[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.4 2.2e+02 4.0 1.6 2 23 86 108 85 108 0.93

2 15 0.088 14 7.8 0.3 1 23 114 136 114 136 0.96

3 15 1.1 1.7e+02 4.4 3.1 1 23 142 165 142 165 0.93

4 15 0.049 7.8 8.6 0.4 3 23 174 195 172 195 0.94

5 15 0.02 3.1 9.8 1.8 1 23 200 223 200 223 0.95

6 15 1.2 1.9e+02 4.2 0.5 1 20 229 249 229 251 0.90

7 15 2.1e-06 0.00034 22.3 0.4 2 23 285 307 284 307 0.95

8 15 0.00036 0.057 15.3 0.1 1 23 313 335 313 335 0.98

9 15 0.00019 0.03 16.2 1.8 1 23 341 363 341 363 0.96

10 15 4.5e-06 0.00071 21.3 1.2 1 20 369 388 369 389 0.96

11 15 1.8e-05 0.0028 19.4 1.7 1 23 400 422 400 422 0.99

12 15 0.00064 0.1 14.5 2.9 1 23 428 450 428 450 0.97

13 15 0.0053 0.84 11.6 3.5 1 23 456 479 456 479 0.98

14 15 7e-05 0.011 17.6 3.4 1 23 493 515 493 515 0.98

15 15 7.1e-06 0.0011 20.7 3.9 1 23 521 544 521 544 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.4	2.2e+02	4.0	1.6	2	23	86	108	85	108	0.93
2	15	0.088	14	7.8	0.3	1	23	114	136	114	136	0.96
3	15	1.1	1.7e+02	4.4	3.1	1	23	142	165	142	165	0.93
4	15	0.049	7.8	8.6	0.4	3	23	174	195	172	195	0.94
5	15	0.02	3.1	9.8	1.8	1	23	200	223	200	223	0.95
6	15	1.2	1.9e+02	4.2	0.5	1	20	229	249	229	251	0.90
7	15	2.1e-06	0.00034	22.3	0.4	2	23	285	307	284	307	0.95
8	15	0.00036	0.057	15.3	0.1	1	23	313	335	313	335	0.98
9	15	0.00019	0.03	16.2	1.8	1	23	341	363	341	363	0.96
10	15	4.5e-06	0.00071	21.3	1.2	1	20	369	388	369	389	0.96
11	15	1.8e-05	0.0028	19.4	1.7	1	23	400	422	400	422	0.99
12	15	0.00064	0.1	14.5	2.9	1	23	428	450	428	450	0.97
13	15	0.0053	0.84	11.6	3.5	1	23	456	479	456	479	0.98
14	15	7e-05	0.011	17.6	3.4	1	23	493	515	493	515	0.98
15	15	7.1e-06	0.0011	20.7	3.9	1	23	521	544	521	544	0.97

Sequence Information

Coding Sequence: atgtttaCTAATAGTGATGAAAACAGTCTACTATCGTGTATAGTGTGTTTAGTGAGTGATAATTTGGTTAGTACGAACGATTTCGATTCTGATAACATACAATGGAAAGGCAAATTGACTTTTTGTATACCAGAATTGGATTGGAATATTGGTTGTTATTTATGCCAGTTGTGCACGAGCCAACTGAACATGCTGTGCAATTTCCGCACTCAATGTCTGCGCTCTCATTTGAAATGCAAAACGGCTAATTTTATTCATTGCAAGAATTGTATGATTACATTTGGTAGCCACAATGAGTTGATTGAGCATAATAAAGTGGTGCATTGTTTGGATAAACCGTACATATGTTTGCTGTGTTTGGAATGTTTCGAGTCTTCACTAGAGTTGGTAGTTCATGAGAAAGAGCACTATCAAATCACCCAGTTCCACTGTGAGAGttgtaatgttttttataacaatgaagCTACGTTTGAAacacataaattatataaacatacagATGTTAGTTTATGGGATAATTGTGAGCATTGTGCAATAAAATTTCCAactaatcaaatattaaatgcaCACATGCAGTTGCAACATGGTAgtgagatatttatttgtttccatTGCAATCAAAGCTATTTATCAAAGGATTTATTAATTGAGCACATTAATCAGAAACATGCAATCGAATCCAGTTTCATGTGTGATTCATGTGATGGCACTGTTTTTAGTACAAAACAAAAGTTGGATATGCATCGAATTCATTGCAATTGCAATGATGTTCATGATAATGATGATTCATCTGCAAGTGAGAAGCCTGAAAAAAAGCGTCGTGGtagaaaaccaaaaataaaagttatcagCAGTTGCGAGTTGTGTGgaataacattttcaacaaaatatcttttaaatagGCATGTTCGTAATGTGCATGCTGCTCAAAAAAACTACACATGTGATATTTGCGCGCAAAAATTTGCATCACCTGTTTATCTAGCAGCTCATAAAAAATACCACTCGGGCAATCGCCCGCATATATGCTCTTTTTGTGGTAAAGGCTACATTACAGCAAGCGATTTGTATCACCACGAAAAAATACATGCCAATAAAAGAGCCTATAAGTGTGAAAAGTGCCCAAAAGCCTTTAATACATCCAGTGACCTTCACAAACATCGAATTTGTGTGCATATCGATCGCTCACAGTGGAAATACGTGTGCACCTACTGCGACCGGCGGTTTCCTCTTAAAACCAATCTTGATACTCACACAAAAACACATACAggtgaaaaaaactatgcatgTCATTTATGTGAGCGCCGCTGCATCAACCGCTCCGTTCTACAGCGCCACATCGAGTCCCATTCGAATGTGCGCTCATTCAAATGCACCCATTGCGAACTCGACTACAAATACCAAAAATCACTAGATCTACACTTGAAAAAAGTGCATGGCATTGGCGACACGAAAATACCCGAGAGGGTGAAAAAGTACTTCTGCCATGTGTGCCCCAAATCGTATTTTGCAAACAATAAACTGCAAAAACACATACGGACACACACCGGCGAGCGACCGTTTGCGTGCCATATGTGCGACAAGCGGTTTATTGATAAATCCTACATGAAACAGCATTTGAAGACAACACATAATGTTCTAGATACAACTGTGTCTGTGTaa
Protein Sequence: MFTNSDENSLLSCIVCLVSDNLVSTNDFDSDNIQWKGKLTFCIPELDWNIGCYLCQLCTSQLNMLCNFRTQCLRSHLKCKTANFIHCKNCMITFGSHNELIEHNKVVHCLDKPYICLLCLECFESSLELVVHEKEHYQITQFHCESCNVFYNNEATFETHKLYKHTDVSLWDNCEHCAIKFPTNQILNAHMQLQHGSEIFICFHCNQSYLSKDLLIEHINQKHAIESSFMCDSCDGTVFSTKQKLDMHRIHCNCNDVHDNDDSSASEKPEKKRRGRKPKIKVISSCELCGITFSTKYLLNRHVRNVHAAQKNYTCDICAQKFASPVYLAAHKKYHSGNRPHICSFCGKGYITASDLYHHEKIHANKRAYKCEKCPKAFNTSSDLHKHRICVHIDRSQWKYVCTYCDRRFPLKTNLDTHTKTHTGEKNYACHLCERRCINRSVLQRHIESHSNVRSFKCTHCELDYKYQKSLDLHLKKVHGIGDTKIPERVKKYFCHVCPKSYFANNKLQKHIRTHTGERPFACHMCDKRFIDKSYMKQHLKTTHNVLDTTVSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -