Llun000536.1
Basic Information
- Insect
- Lordithon lunulatus
- Gene Symbol
- -
- Assembly
- GCA_963942505.1
- Location
- OZ012666.1:1420477-1422900[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5 7.9e+02 2.3 0.1 2 10 322 330 321 338 0.89 2 13 0.11 17 7.5 0.2 2 23 369 390 369 390 0.96 3 13 0.00011 0.017 16.9 0.7 2 23 433 455 433 455 0.97 4 13 0.0017 0.27 13.2 2.0 1 23 499 522 499 522 0.94 5 13 0.012 1.8 10.6 0.2 1 23 528 550 528 550 0.95 6 13 0.0013 0.21 13.5 0.3 2 23 557 578 556 578 0.96 7 13 2.5e-05 0.004 18.9 6.2 1 23 586 609 586 609 0.98 8 13 2.6e-05 0.0041 18.9 3.6 1 23 614 636 614 636 0.98 9 13 0.00035 0.055 15.4 1.7 1 23 642 664 642 664 0.98 10 13 1.4e-05 0.0023 19.7 0.6 1 23 689 711 689 711 0.98 11 13 6.5e-05 0.01 17.6 0.2 1 23 717 739 717 739 0.97 12 13 0.00025 0.04 15.8 1.5 1 23 745 768 745 768 0.93 13 13 6.4e-05 0.01 17.7 4.9 1 23 774 797 774 797 0.97
Sequence Information
- Coding Sequence
- ATGGTTTTAACAGAAACTCGTTTGAATGCATTGGTTAATACACAGCTCGAAGAAGCTGCACGAACAAAAACGCCTTTCAAGAAACAGGTGTTTTCGAAAGAAAATTTTCGGAATTTTATGAAGATTAATGCTGTTCCGGAATCTGAGTACTATTTGAATTCGGTTACACCAAAAGCTGTTACCACTCGTCGCATTACGACGCCTATTAAAGAGACAACTACTATTAATGATGACCCAAAGACAGAAGTTAAAACAGTAAGAACGTATGGAGCTTCTACCAAGAAGATATGTGTACCAAAGCTAACGAATATTGATAATGTTGAACCTAAAACAGAGATATTAAGAGAACGTTTGAATTTATCTAAAGTAATACCGCcaaaaaatattgctagtacTAGTACTGCCACTGAAATGTCTATGAATGAAAGAAcgccaataattttcaataatgatAAACGATACAAAAATCCGGATAGTTTGTGGACTAAAACGATTAAACCTAAACAGGGTGATGATGTAAAACAAGGAAGCTCAAATGGTGTGTTTAATGCTAGAAATTCAACCTTTAAACTCATACCTGATCAGGTTGAAAATCAAGCTGGATTACGATACGTCTTAATAAAATCATCTGAGAGTACGAATCATAAGGACgtgattttgaaattattgaagAAAAGTACAACagataataatagtaatgtaaCCTCCAAAAAGAAACCAgtgaaattattgtttaaagAGAAGCCTAAGAATACGATTACGATTAGTAATGAAGCAGTAAAGAGTAGTGATGGCATCAAAACAATACCCACgcaagatatatttaaaaataaaccacCACCCAGTGATATTATCCTTGATAGTCCTTCGACATCAACAGTATcgattatacaaacaaataatgttatagATCTAACATCTACGATCTCATCTAAAAAAACTATTGATAATACAGTATGCCAAAAATGTACACGATGCGGATTGAGTTTTTTAAGCCGAGCATCTCAACTAAACTACATGCAGGTACACAAAAGACGTGACGCATTTAAAGTCGTTGATCAAGCAATCGACTTTAGCCTAGCAGCCGGTACACTTGAAGAAAGAACATGCACCGAATGTGGTGTATCCCTCAAATCGAAACAACTAATGCCGAGACACCTACTAATTCATAAATACACCTCAAAATTTAAAGACGGAAAATGTTGCGAGGGCTGCGGAAGCATTTGCAGAAACATACAAACACTACATCGCCATAAAAAACAGTGCACAATTGGTGCAAAACTACTTGAAGTTCGAACATGTAATATATGCGACAAAGTCCTTTATAACCAACAGTGGCTTTTAAAACATAGACGTAAAGCGCATATGCTACAATCCGATCCGAAAGTGTTTTACAGTGATATTGAAAAATGTTACGTGTGCGACAAATGCGTTTTTAAACATGACTCAAAACCATTTTTCATCCGGCATTACGAACAACAACATTTGATGGCGTTTAAATGTATGTACTGTCAACTATCTTTCGAAACCAGGCTGGAGTTAACCAGACACAAGTTCTCAGTGCATGCAGACAGAAAGAAATATGAATGCGGGATTTGTAAGAAACGGTTTTTTACGCTAGAAGCAAGTCGGGCGCATTTGGCTATACATACTGATAGAGTGAAGCTTATTTGCGAAATTTGTGGTGGGTTGTTTGGACATAGGAACAGCTTGCGAATACACATGTTAACACATGCCGATCGTACGGTGAGGCCGTTTAAATGCGAGCACTGTGGTAAAACATATCAACGCGCAACATATTTGTCTAAGCATATAAGATCGTGCCATTCAGATGTACGATATAATTGTGATGAGTGCGAAAAGACATTCAAACATTCGGCTAGTTTAAGCATGCATAAACGTAGACATCGTGGTGATATGAGATTTACGTGCCTTGTTTGTCAGAAGAGGTTTATAACAAAGTTTGGACTGGATACACATACGAATACGCACCGGTATGCAGGTGGTAGTTATTTGGATGGTTATAAAATTCATCGCGCTGGTGGTTCTGAGGATCGCAAGACTTTCGAGTGTAAAACTTGCGGAAAAACGCTTTCTTCTAAGGTAGGATTGAAGACGCACGAGAGGATCCATACGGGTTTGAAGCTGTTTGTTTGTTCACTTTGTGGCAAGGCGTTCGCTATGAAAGGTACTCTTACGATGCACGAGAAGAATCATAGCGGTGAGAAAAACCATAAGTGTGATTATTGCGGGCAGATGTTTCGGGCGAAATACGGGCTACAGATGCACATAGTGTATCGGCATACGAAGGAGCGGAAGTATGTATGTGGAGTTTGCGACAAGAAGTTTTATGTTAATCATGACTTGAAGAAACATATGTCCAAATGTCATACTGGTTTAGAGGAGCAATTTGCTACGGCTTAA
- Protein Sequence
- MVLTETRLNALVNTQLEEAARTKTPFKKQVFSKENFRNFMKINAVPESEYYLNSVTPKAVTTRRITTPIKETTTINDDPKTEVKTVRTYGASTKKICVPKLTNIDNVEPKTEILRERLNLSKVIPPKNIASTSTATEMSMNERTPIIFNNDKRYKNPDSLWTKTIKPKQGDDVKQGSSNGVFNARNSTFKLIPDQVENQAGLRYVLIKSSESTNHKDVILKLLKKSTTDNNSNVTSKKKPVKLLFKEKPKNTITISNEAVKSSDGIKTIPTQDIFKNKPPPSDIILDSPSTSTVSIIQTNNVIDLTSTISSKKTIDNTVCQKCTRCGLSFLSRASQLNYMQVHKRRDAFKVVDQAIDFSLAAGTLEERTCTECGVSLKSKQLMPRHLLIHKYTSKFKDGKCCEGCGSICRNIQTLHRHKKQCTIGAKLLEVRTCNICDKVLYNQQWLLKHRRKAHMLQSDPKVFYSDIEKCYVCDKCVFKHDSKPFFIRHYEQQHLMAFKCMYCQLSFETRLELTRHKFSVHADRKKYECGICKKRFFTLEASRAHLAIHTDRVKLICEICGGLFGHRNSLRIHMLTHADRTVRPFKCEHCGKTYQRATYLSKHIRSCHSDVRYNCDECEKTFKHSASLSMHKRRHRGDMRFTCLVCQKRFITKFGLDTHTNTHRYAGGSYLDGYKIHRAGGSEDRKTFECKTCGKTLSSKVGLKTHERIHTGLKLFVCSLCGKAFAMKGTLTMHEKNHSGEKNHKCDYCGQMFRAKYGLQMHIVYRHTKERKYVCGVCDKKFYVNHDLKKHMSKCHTGLEEQFATA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -