Llun005540.1
Basic Information
- Insect
- Lordithon lunulatus
- Gene Symbol
- PRDM4
- Assembly
- GCA_963942505.1
- Location
- OZ012667.1:2360324-2366583[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.6 4.1e+02 3.2 0.1 2 23 209 230 208 230 0.91 2 13 0.00046 0.073 15.0 1.6 2 23 238 260 238 260 0.95 3 13 0.0031 0.5 12.4 0.1 1 23 352 374 352 374 0.96 4 13 6.3e-05 0.01 17.7 2.7 1 21 378 398 378 399 0.95 5 13 0.0013 0.21 13.5 4.2 2 23 403 425 402 425 0.93 6 13 0.0018 0.29 13.1 1.4 1 19 430 449 430 451 0.95 7 13 2.8e-06 0.00044 22.0 2.0 2 23 458 479 457 479 0.96 8 13 0.00027 0.043 15.7 3.4 3 23 492 512 490 512 0.96 9 13 0.0014 0.22 13.5 0.9 1 23 517 539 517 539 0.98 10 13 1.7e-05 0.0027 19.5 1.0 2 23 546 567 545 567 0.97 11 13 0.0001 0.016 17.1 1.5 1 23 573 596 573 596 0.97 12 13 0.00033 0.052 15.4 0.3 2 23 599 620 599 620 0.94 13 13 0.0057 0.91 11.5 3.0 1 23 625 648 625 648 0.98
Sequence Information
- Coding Sequence
- ATGGAACCAGTAGAAGAGGACATGGACGATCCCCCAACCACTTGTGGTATTTGTGGCGAGCCCCACAACTGTGCAGACTGTgatataatagaaacaaatttaGTTGTGGATGATGCCCCAGTACCTTCAAGGGCCCGCCTATCACTGCCCCCAAACCTGGTAATAGAAGCTATGTGTGAGGGCACATACTCAATTGTAGCCTCACAGGTTATACATAAAGGCACCCGATTTGGGCCATTTGAAGCTAAAAAGGTGTTCAGTTTGAATCCAGCCACTGGGTTTCCTTTGAAGGTTTTTCAGGAGGGGGACTATTTTAAGGAGATGTACCTAGATAGCTCTAATGAGGCGGAGTGCAATTGGATGCACTTTGTGCAGCCAGCAAACAACATGAAGGAACAGAATCTGGTTTGTTATCAGGATAATgtggatattttttatgttactaTTCGGAAAATTGAAGTCGGCGAACATTTTAAAGTTTGGTATGCACCCTACTATTGTCAGCTGATGAATAAGCAGATGCTGGAATGTGATGAGGATGATTTTGAGGTGATGGATGATGAGAATTTAGATATGAATGAACTAATTAAAGCCCAGCAAGGTATTAGAGAGCGTGAAATATGGATTTGCAAATTTTGTGGCAGACAAGACACTGACATGGTAAATTTTGCCACCCACATCAGTGCTCATTACAACATGCAGCTGCGTAGAAAATGTGATTTATGTAAAGAAACTTTCAAATCAGGAAAGAGCTTAAAAAAACACATGACCCTAGTCCACTCAAATGAAATGTATAATATGTCGGTGGAAAATGCCAAAACCTGTACAACGaataaagaaataaacagaCCACAAAACATAGTAGGAGGACCGTTATTGAACGCGGGCCAGTTGGATAATTGTAACGTGCTTTTGGATCACATGATGCTGCCAAATTTCGATATCGACCAGTCGAATTTGATGCTGGAGAATGAACTGAACTTGGGCGTGGACAGTCTGCTCAGTGAGactgaaaattttgattttagcaTCCCGGCCAGCGGAGAGGAGAAGTTTGTGTGTGATATTTGTGTCAAGCCATTTGAAAAGTTGAGGAGTTTGATTTTACATCTGGCTTTGCACACGGGGAAATATACGTGCAAAATGTGCAAAAAGatATTTTCCCGCAATGAAAACTTGGTCTCCCACCGGTGCAACTCGCAGCTGACCTGCTCACATTGCGACCATAAATTCGTTTTGAAAAAGTATTTAAACCGGCACATGGCGCTATACCACAACAACATAAACTATCCCTGTGAAAAGGGCTGCAAAAAGGTGTTCACGTCGCAGAAGTCACTGGAAATGCACAATTGCCCGGAGCCAGTGAAGCTGAATTGCAGTATTTGCCAGAAGGAGTTTTACAACACCCGGAATTTAAATAGACACATGCGATCGCACTACGCTAAGGATAGAGAGATCATACTATCTCATTTGTGTGAAATATGCTCGAAACAGTTTAAGAACAAAAAGATGCTGTTGCAACATTTAAGCACGCACAAAGAGCCTCAGTTCACTTGTCAGGTTTGCATGAAGCAGTTTGCACGGAGGGCTACGTTTTTGGATCATATGGAAACGCATAAGGTAGCTTCGAAAATAGTTTGCACTGTCTGCAATCAAAAGTTCAcgctcaaaaaatatttaaccattCACATGAGGATGCACGACACCGACCTGAAATTCAAATGCGGCGAGTGCCCGCAACGGTTCCGCCAGAAGGCCAACATGATGACCCATTTCAATCGCATGCATCGGCGTAAATGTCCGGACTGTGATGAGGTTTTTATGACCGCGGAGAAACTCAAGCAGCACAGCGTGAAGCACTACGAAAAGTGCTACGAGTGTCCCCTCTGTAAGCACGTGATGAAAATGAAAAGCTCGCTGTCGCGGCATCTCAAGCGCAAGCATCCCGGCATCGCGCTGGATCAGTTGAATATTAGGTGCATCGAGCGCAATATTGTGAGCGAAAATAATAATGTGACGGAATGTGTTGCCAGTCCGAATTTGGAGGCGTGCGATGCGGATATTGTGGATTTGTTGGACTTGAAGGATGGAAAGGATGATGTGAGCTGTTTGCAGGACATTGACAGCAATTTGGAGTATATGGTCAACAGTTACGATGCGAATCATTTGATTgagaataattttaataatgctGATGATAGAAGTATTGTCAAGAACTTGGTGGAGAGTGAGCTGGACTTCAATAGTTTGGAGATGGAGTTTGAGAAGAATTTTAATACTCCAAATGAGGCGAGTTTGGTAAATCCAGAGGTTTGTTTGGCAAATCAAGAAGTTTGTATAGCAAATCAAGAAGTTTGTTTGGCAAATCAAGAGGTTTGTTTGTCAATGCCGGATTTGGGTGATGTAGATCAGAATATTACATTAGgTTCAAGCGCCTATATCCTTGAAAACGGAACTATTGTTGATTCAGTTGAGCAAggtaaagttttatattatgttttaggTAAGGACCAAAACAAGGCTAATTAA
- Protein Sequence
- MEPVEEDMDDPPTTCGICGEPHNCADCDIIETNLVVDDAPVPSRARLSLPPNLVIEAMCEGTYSIVASQVIHKGTRFGPFEAKKVFSLNPATGFPLKVFQEGDYFKEMYLDSSNEAECNWMHFVQPANNMKEQNLVCYQDNVDIFYVTIRKIEVGEHFKVWYAPYYCQLMNKQMLECDEDDFEVMDDENLDMNELIKAQQGIREREIWICKFCGRQDTDMVNFATHISAHYNMQLRRKCDLCKETFKSGKSLKKHMTLVHSNEMYNMSVENAKTCTTNKEINRPQNIVGGPLLNAGQLDNCNVLLDHMMLPNFDIDQSNLMLENELNLGVDSLLSETENFDFSIPASGEEKFVCDICVKPFEKLRSLILHLALHTGKYTCKMCKKIFSRNENLVSHRCNSQLTCSHCDHKFVLKKYLNRHMALYHNNINYPCEKGCKKVFTSQKSLEMHNCPEPVKLNCSICQKEFYNTRNLNRHMRSHYAKDREIILSHLCEICSKQFKNKKMLLQHLSTHKEPQFTCQVCMKQFARRATFLDHMETHKVASKIVCTVCNQKFTLKKYLTIHMRMHDTDLKFKCGECPQRFRQKANMMTHFNRMHRRKCPDCDEVFMTAEKLKQHSVKHYEKCYECPLCKHVMKMKSSLSRHLKRKHPGIALDQLNIRCIERNIVSENNNVTECVASPNLEACDADIVDLLDLKDGKDDVSCLQDIDSNLEYMVNSYDANHLIENNFNNADDRSIVKNLVESELDFNSLEMEFEKNFNTPNEASLVNPEVCLANQEVCIANQEVCLANQEVCLSMPDLGDVDQNITLGSSAYILENGTIVDSVEQGKVLYYVLGKDQNKAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -