Llun016014.1
Basic Information
- Insect
- Lordithon lunulatus
- Gene Symbol
- Sall1
- Assembly
- GCA_963942505.1
- Location
- OZ012669.1:7337285-7340086[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.9 1.3e+03 1.7 0.1 3 23 8 28 7 28 0.90 2 15 0.31 49 6.1 2.1 1 23 452 475 452 475 0.86 3 15 0.96 1.5e+02 4.5 0.0 2 23 553 575 552 575 0.93 4 15 0.0007 0.11 14.4 0.0 1 23 583 605 583 605 0.98 5 15 5.1e-05 0.008 18.0 2.0 2 23 608 629 607 629 0.97 6 15 0.1 16 7.6 1.1 1 23 635 657 635 657 0.96 7 15 9.1e-05 0.014 17.2 4.8 2 23 664 685 663 686 0.95 8 15 0.097 15 7.7 1.3 6 23 700 717 698 717 0.95 9 15 8.6e-06 0.0014 20.4 1.4 3 23 724 745 723 745 0.97 10 15 0.06 9.5 8.3 0.1 2 23 761 781 760 781 0.96 11 15 5.7e-05 0.009 17.8 1.5 1 20 787 806 787 809 0.92 12 15 0.00045 0.072 15.0 0.2 1 23 817 839 817 839 0.99 13 15 0.00036 0.058 15.3 3.5 1 23 845 867 845 867 0.98 14 15 1.2e-05 0.0019 19.9 3.2 1 23 873 895 873 895 0.98 15 15 0.00055 0.087 14.7 7.3 1 23 901 923 901 924 0.96
Sequence Information
- Coding Sequence
- ATGGAGGCTAACAGCCAAATATGTCCAGTATGTACGCTATATCTACGACCAGGGATGACTCTCAAATCCCACTTGGCGAGTCACCCCAAACAAAAAGTGATAGAAGCCCTGTGTCGGCTCTCCACCGCAGAGGTCGACCCCGAGCCCGAACCCGAACCCGAGAAGCAGCTCGCATCAACCTCGACAAACATCATACAGCCCAACCCCACTCAACAATGGAGTCCAGCTGGATTGCAGCCGGCTGCAATACCAGGAAACCATTCATTCATATACCAACAGTGGAGCTCCTCAGCTCCCCCATCCAATATGGTGAACGTAGGCCAACTGGGGCAGCAGTATGTAACCATCCCAACCGTACTCCCACCACAAATGATGTGTCCTCCGTACGTATACCAACAACAACAAGTAATAATGTCCTCAGGCGCGCAGCTACCCCCAATGCCGCCCCTCACACGAATGTTACCCATTGAACCGTCCGTTATAGAGCCTCACGCGCAGATCATAGAAGAAATCGACGACGAACTAGATAAAATACAACAACCAGATCTGGTGCTGATTGAAAACAGTCTAGACGGCCTTAATGTGAACATACAGTCGCAACAAGCAGAGGACGATGAAATAAAAGAGGACGAGATTGAAATTAATGAGGAACCACTGATAAAAAGCCCGAAACCACTCGATTTGATTACCACTTTCGAGGAAGGCGAGCGCGAGCTGGGGTCGCCCGGTTCGAACGCAAGTTCGGATTTCATCCGAGTCCGACGCGATTTGAATAAATCGTGCCAAACACAGTCGGATGATGAGGACAATTATGATAGTGGGAAGAGTGAGGTTGAGGATGgtaattatgttacattaacAGCTAATCAAAACGAGGGTAATGTTTGTAGTGCGCCTCAAGCGGTTGAATCTCAAAATTTAATGGATATGGACGGTATGAATTTGATTTTGAACGCTGATTTCATGCAGAATCAAATTATTTCGCAGGTCGAGGATTTTGATTACAATTGCAAATATGAACGGCCTGCTGTTATTATGAATATCGGGGAATATAATGATGGGCGGGATGAGAGTGTTTCGGTGGATAGTACTAATATAAGGGCGGACGAGCATATGCCGCCACGGGGGGAGTTGTCAGGGCAGGAAAGCAATGCGAGTGATATTGCATGGAATCGTATACAGTACGCGGGTAGTTCAGCGACGTCATACGATTTATTAGCTAGAGAAAGTTGGGATGGTTCAGATGCATCGGATAATGATAATGAGATGCCGCCGTTGCAAAGTCGCGTACCACAAGAGTATGATATTAATGATACTCCTACTGTAAGCGGATTTTCAGAGCCTCCAATACAGTACAAATGTTCGACTTGTGGGGAGAATTTTAATTGCCCGAAGGAGCGTAAGGAACATCAAGCGGAACAGCACGCGAAACCAAATATTGTTGGATCGCGTCTCGTGGGAgcgaaaaaagtcaaaaagctGGTTATAAAACCTAAGAAGATTGACGTGAAAACTGAAAACAATTTCGATAATGTTTTCACTAATAAATTAAAGCTTGAATCGGCTGAGGCGGAGAACAATTTATTGATGGAGGCTCCCCCTGTTATTATTGATGTTCAAAAAATAGAggaacaattaataattaataatccaaCTGTTTGTACTGTATGTGAAATGGTTTTGGCTGATGGCAAAATGCTTGCTGCACATCAATTGGAAGTACATAATATCAGTACGGAACAAAAGTACAAATGTGCTATGTGTGGGGAGGCATTTCCTAATGAACCAAAATTCACCGAACATCTAGCGGTGCACCCATTGGAGTGCAGATTATGTGGCAAGTATTTCTATAAACGACAAAACTTGCAACTTCACATGAAACGCCACTTGGGTATTAAACCGTTTAAATGTATCGTTTGCGAAAAGTCGTTTTTAACAAAACAGAAGCTAGAGGAACATAAGAATATACATACAGGTGATACCCCAATTCAGTGCAATATGTGCGAGGAGTCATTTAGAAGGCACTCCAATTTAGTGCAACACAAAAACAGgcatcattttaatattaagaaaaaaattaaagactACATTTGTTTCTGCGGCGAGGTTTTCCACTCCAAAAAGAAACTGGCGTGGCATCGGGAGATCCACGAAAACAAGCCGAAAGCGTGCAAACAATGCAATGAAAAATTTGTGCACGCAGCAAGCTTAACCCGGCACATGCGGAGGGCGCATAATGAACGTTTTGTGCCCGAACCAGACCGTTTTAATGAAAACGTGGAATGTCCGATTTGCAAGGGTGTTTACTTGAAGTCCTCCCTAGAGATTCATATTAAAAACCATAGCGGAGAAAAACCGTACTCTTGTTCGATATGCAACAAGGATTTCACAACGAAATGGAATCTAAAGTTGCACAAGTGGACACATGCCTCACGCACCTCTAAACCCTTCAAATGCGACCAATGTAACGGCGCGTTCATACGGGAAACAGACTACGTGGCGCATATGAACTCGCATAAGTCCATCAAACCCTACACCTGCAACTATTGCGGTGCACAATTTATAAGGAAGTACAATTGCCAAAGGCACGTGCGTGAGcacgaaaaaaataaaaccttCAGTTGCCAGGTGTGTGGCAAGCTCTTCCACCGCTCCTACTACCTCAAGGATCACATGCGAATACACAGCGGGGTGCGCCCGTACTCCTGCCACATTTGCGGCAAAACATCCACAACAAAAAGTAACCACAACAAACATGTGCGGATACACCACGCTCGCGAGCCTGTAAGTACAGAGAATTAA
- Protein Sequence
- MEANSQICPVCTLYLRPGMTLKSHLASHPKQKVIEALCRLSTAEVDPEPEPEPEKQLASTSTNIIQPNPTQQWSPAGLQPAAIPGNHSFIYQQWSSSAPPSNMVNVGQLGQQYVTIPTVLPPQMMCPPYVYQQQQVIMSSGAQLPPMPPLTRMLPIEPSVIEPHAQIIEEIDDELDKIQQPDLVLIENSLDGLNVNIQSQQAEDDEIKEDEIEINEEPLIKSPKPLDLITTFEEGERELGSPGSNASSDFIRVRRDLNKSCQTQSDDEDNYDSGKSEVEDGNYVTLTANQNEGNVCSAPQAVESQNLMDMDGMNLILNADFMQNQIISQVEDFDYNCKYERPAVIMNIGEYNDGRDESVSVDSTNIRADEHMPPRGELSGQESNASDIAWNRIQYAGSSATSYDLLARESWDGSDASDNDNEMPPLQSRVPQEYDINDTPTVSGFSEPPIQYKCSTCGENFNCPKERKEHQAEQHAKPNIVGSRLVGAKKVKKLVIKPKKIDVKTENNFDNVFTNKLKLESAEAENNLLMEAPPVIIDVQKIEEQLIINNPTVCTVCEMVLADGKMLAAHQLEVHNISTEQKYKCAMCGEAFPNEPKFTEHLAVHPLECRLCGKYFYKRQNLQLHMKRHLGIKPFKCIVCEKSFLTKQKLEEHKNIHTGDTPIQCNMCEESFRRHSNLVQHKNRHHFNIKKKIKDYICFCGEVFHSKKKLAWHREIHENKPKACKQCNEKFVHAASLTRHMRRAHNERFVPEPDRFNENVECPICKGVYLKSSLEIHIKNHSGEKPYSCSICNKDFTTKWNLKLHKWTHASRTSKPFKCDQCNGAFIRETDYVAHMNSHKSIKPYTCNYCGAQFIRKYNCQRHVREHEKNKTFSCQVCGKLFHRSYYLKDHMRIHSGVRPYSCHICGKTSTTKSNHNKHVRIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -